Cinclus cinclus (white-throated dipper): 134048537
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Entry
134048537 CDS
T10813
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
134048537 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccic03019
]
134048537 (CNOT1)
Messenger RNA biogenesis [BR:
ccic03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
134048537 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
134048537 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
134048537
NCBI-ProteinID:
XP_062356350
LinkDB
All DBs
Position
11:complement(7458345..7512839)
Genome browser
AA seq
2375 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFAQLSKVIK
LSKVQEVIFGLALLNSFSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGIAKTMMESSLADFMQEVGYGFCASVEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGSQAHTWNVEVLIDVLKELNPTLDFKVVTYE
LDHPGFQIRDSKGLHIVVFGIQRGLGMEVFPVNAIYRPWKHAEGQLSFIQHSLINPDIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDSLAGMASL
SLGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTQNQTTGFSGIGGLSSQLPGGL
TTGSLTGIGTGALGLPAVNNDPFVQRKLSTSGLNQPTFQQSKMKPSDLSQVWPEANQHFS
KEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYRF
FPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDRF
KNRLKDYPQYCQHLASISHFIQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQAQ
AQAQVPAKAPLAGQVSTIVTTSTTTTVAKTITITRPTGVSFKKDVPPSINTTNIDTLLVA
TDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSI
EPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGM
ITMAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSVVFRPPNPWTMA
IMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGSLLKDKDRLKNLDEQLSAPKK
DVKQPEELPPITTTTASTTPATSTACTATVPPQPQYSYHDINVYSLGGLAPHITLNPTIP
LFQAHPQLKQCVRQAIERAVQDLVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRVAA
HHMMRNLTAGMAMITCREPLLMSIATNLKNSFATALRAASPQQRDMMEQAAAQLAQDNCE
LACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLKV
GGVDPKQLAVYEEFARNVPGFLPTNDLTQPTGFLAQPMKQAWATDDVAQIYDKCMTELEQ
HLQSIPHTLAMNPQVQALRSLLEAVVVARNSRDAIAALGLLQKAVEGLLDATSGADADLL
LRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQQ
YDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSRGN
APEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWVN
LYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRALAEQQHNP
AANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHDVR
QSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLEL
ISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVLLV
LLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINIA
PRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNIQLINALVLY
VGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHT
HYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNHE
FVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7128 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcacattgtgaataggcacggt
ccggaggcagacagacatttactacgctgtctattctcgcacgtggatttcagtggcgat
ggtaaaagtagtggcaaagattttcatcagactcaatttctgatccaggagtgtgcgtcg
ctgattacaaaaccaaactttatctcgacgctgtcgtacgccattgacaatcccttgcac
tatcagaagagtctaaagccttcaccccatttatttgcccaattgagtaaagtcatcaaa
ttaagtaaagttcaagaggtgatttttggtctggctttactgaactctttcagctcagat
ctgcgaggttttgctgcccagtttatcaaacagaaactcccggatcttttgcgctcttac
attgacgcagacgtcagtggaaatcaagaaggtggcttccaagatattgcaatagaggtc
ctgcaccttctcctctcccatctcctctttgggcagaagggagcctttggggtaggacag
gagcagattgacgctttcctcaaaacattacgtagagattttccccaggagcgttgccct
gtggtgcttgcaccacttctataccctgaaaaacgggacattctaatggacaggatcctg
cctgattctggagggatagccaaaaccatgatggagagttctctggcagatttcatgcaa
gaagttggctatggcttttgtgcaagtgtcgaagaatgtcgcaacataatcatgcagttt
ggtgttcgcgaagtcacggctgcccaggttgccagggttttggggatgatggctcgaact
cactcaggattgacagatggtattccattacaatctatttcggctcctggcagtgggatt
tggagtgatggcaaagataagagtgatggaagccaagcccatacctggaatgtggaggtc
ttgattgatgttcttaaagagctgaaccctacactggacttcaaagtagtaacgtatgaa
ttggaccatccaggatttcagattcgtgatagcaagggcctgcatattgtagtttttggc
atccagagagggctgggcatggaggtttttccagttaatgccatatacagaccttggaag
catgcagagggccagctctccttcatccaacactccctcataaaccccgacatcttctgt
tttgctgactacccttgccatactgttgccacagacatcctgaaagcaccaccagaggat
gacaatcgagaaattgctacatggaagagcctggatttgattgagtctctgttacgattg
gcagaagtggggcagtatgaacaggttaagcagctcttcagttttcctatcaagcattgc
ccagatatgctggtattggccttattgcagatcaacacgtcctggcataccctgcgccat
gaactcatctccactctcatgccaattttccttggcaaccatcccaactcagccatcatt
ttgcactatgcatggcatggacagggtcagtctccttcaattcgtcagcttatcatgcat
gccatggcagaatggtacatgagaggggagcagtatgatcaggcaaaattgtcacgtatt
cttgatgtggcacaagatttgaaggccttgtcaatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgcacttgcctctcgacgggaatacctcaaacttgacaaatgg
ctcacagataaaattcgggagcatggggaacctttcatccaggcctgtatgactttctta
aagagaagatgtccatctatcctgggtggccttgctccagagaaggatcagcccaaaagt
gctcagcttcctccagaaaccttggcaactatgttggcgtgtctgcaagcttgtgctggg
agtgtttctcaggagctgtcagagacgatcctcaccatggtagcaaactgcagtaatgtc
atgaacaaggctcggcagcccccacctggagtcatgcccaaagggcgcccgcccagcgcg
agcagcttggatgccatctctcctgtgcagatcgactcgcttgcaggaatggcctctctt
agtttaggtggctcagctgctcctcacacccagagcatgcaaggcttccctccaaacttg
ggctctgcattcagtactcctcaatcaccagcaaaagcattcccacctctttccacccaa
aaccagacaaccggtttcagtggcatcggaggactctcttcacagcttccaggtggtctc
actacgggtagcctgactggcataggaactggagccctgggccttcctgcagtgaacaat
gacccattcgtgcaaaggaagttgagcacatctggactgaaccagcctacattccagcag
agtaagatgaaaccttctgacttatctcaggtgtggccagaggctaatcagcactttagc
aaggaaattgatgatgaggcaaacagctacttccagcgtatttacaaccatccaccacac
ccaaccatgtctgtggatgaggtcttggaaatgctgcagaggtttaaggactccaatatt
aaacgggaacgcgaagtgtttaactgtatgctgaggaacttgtttgaagaatatcgtttc
tttccccagtacccagataaagagctgcacataacagcctgtctcttcgggggcatcata
gagaaaggactggttacttatatggcactgggcctggccctgcgctatgttcttgaagcc
ttacgaaagccttttggatccaaaatgtactattttggtattgctgcactagatagattt
aaaaatagattgaaggactatccccagtattgtcagcacttggcttctattagtcacttt
atacagttcccacatcatttacaggagtacatagaatatggacagcaatccagagatcct
cctgtgaagatgcagggttcaatcaccacccctggaagtattgcacttgcccaggcccag
gcccaggcccaggttccagcaaaagcccctcttgctggtcaagtcagcactatagtgacc
acctcaaccaccaccaccgtggcaaaaaccattacaattacccgaccaactggagtcagc
ttcaagaaagatgtgccgccttccattaatactaccaacattgatacgctgttagtagca
acagatcaaacagagaggattgtggaacctccagagaatgtccaggaaaaaattgctttc
atcttcaataatctgtctcagtcaaatatgacacagaaggttgaagaattgaaggaaaca
gtgaaagaagagttcatgccttgggtatcacagtatcttgtgatgaaaagagtcagtatt
gagcctaactttcacagcttatattcaaacttccttgacacacttaagaatccagagttt
aataaaatggttctgaatgaaacctacagaaatatcaaggtgctattgacatcagataaa
gctgcagccaacttctcagaccgttccttgttaaagaaccttggtcactggctgggaatg
ataacaatggctaaaaataagcccatcttgcacacggatttggatgtgaagtcactgcta
ctggaagcatacgttaagggacagcaggaattgctttatgtagtgccatttgttgccaaa
gtcttagaatccagtgtcaggagtgtggtcttcaggcctccaaacccatggacaatggcc
attatgaatgttttagctgagctgcatcaggagcatgatctgaaattgaatctgaagttt
gagattgaggtgctctgtaagaatcttgcactagacatcaatgagctgaaacctggaagt
ctcctgaaagataaggatcgtttgaaaaatctggatgagcagctgtctgctccaaagaag
gatgtgaagcagccagaagagctaccgcccatcacaacaactactgcttctacaactcca
gctaccagcaccgcttgtacagccacggttcctccacagccccagtacagttatcatgac
atcaacgtctactctttaggagggttggctccacacattaccttaaatccaacaattcca
ctgttccaagcccacccgcagctgaagcagtgtgtgcggcaggcgatcgagcgcgcagtg
caagacctcgtccatccagtggtcgacagatccatcaagattgccatgacgacctgtgaa
cagatagtcaggaaggactttgccctggattcagaggagtcgcggatgcgtgtggctgct
caccacatgatgaggaacctgactgctgggatggccatgattacctgcagagaacctttg
ctgatgagcatagctaccaacttgaaaaacagctttgctacggcactgagggcagcctct
ccacagcagagggacatgatggagcaggcagctgcccagttagcacaggataactgtgag
cttgcctgctgctttatccagaagacagctgtggaaaaggcaggccctgagatggacaag
aggcttgcaactgaatttgagctcagaaagcatgctagacaagaggggcgtcgctactgc
gaccccgttgtgttaacgtaccaggctgagcggatgccagaacagatcaggttaaaggtt
ggaggtgtggacccaaaacagctggctgtttatgaagagtttgcacgaaacgtccctggc
ttcttgcccaccaatgacttaactcagcctacagggttcttggctcagcctatgaagcaa
gcttgggctacagatgatgtagcacaaatttatgacaaatgtatgacagaactggagcag
cacctgcagtccattccacacaccctggccatgaatcctcaagttcaagccttgcgtagc
ctcttggaggcggtggtagtggcccggaactcccgggatgctattgctgcccttggacta
ctgcagaaggctgtagaaggcttgctggatgccaccagtggggctgacgctgacctcctg
ctccgctatcgtgagtgtcacctgttggtgctgaaggctctgcaggatggccgtgcctat
ggatctccgtggtgtaacaaacaaatcactaggtgcctgatcgaatgcagagatgagtac
aagtacaatgtggaagctgtggagctgctaatccgcaatcaccttgttaacatgcagcag
tatgaccttcacttggctcagtccatggagaatggcttgaactacatggctgtggctttt
gccatgcagttggttaagatcttgttggtggatgagagaagcgttgcccatgtaacagaa
gcagatctgtttcacaccattgagacactcatgagaattaatgctcattccagaggaaat
gccccggaaggattacctcagctgatggaagtggttcgatcaaactatgaagcaatgatt
gaccgtgctcatggaggtcctaatttcatgatgcattcaggaatttcccaagcttctgag
tatgatgacccaccaggcctgagggagaaggcagaatacctgctgagggagtgggtgaac
ctctaccattcagctgcagcaggccgtgacagtaccaaagcattctctgcgtttgttgga
cagatgcatcagcaggggatcctaaaaacagatgacctgatcacccgttttttccgactg
tgcactgaaatgtgtgttgagatcagctatcgagccctggccgagcagcagcacaatcct
gcagccaaccccactatgatacgggccaagtgctaccacaacctggatgcctttgtgcga
ctcattgcactgctggtgaagcactctggggaggcaaccaacacagtcacaaagatcaac
ctcctgaataaggttcttggtattgtggtgggagttcttctgcaagaccatgatgttcga
cagagtgagtttcagcaacttccttaccatcgcattttcatcatgttgctgttggaatta
aatgctcctgaacatgtgctggagaccatcaacttccagacactcacagctttctgtaac
acatttcacatcctgaggcctacaaaagctccaggttttgtttatgcctggctggaactg
atctcccatcggatatttattgcaagaatgctggcacatacaccacagcagaagggttgg
cctatgtatgcccagttattgatcgatctgttcaagtacttggctcctttccttagaaat
gtggaactcaccaaacctatgcaaattctttacaagggcactctgcgtgtgttgctggtc
ttgttgcatgatttcccagaatttctctgtgactaccactatgggttctgtgatgtgatc
ccacctaactgtattcagctaaggaatctgatcctgagtgccttcccacggaacatgagg
cttccagaccctttcacccccaacctaaaggtggacatgttaagtgagattaatattgct
ccacgaatacttacaaatttcactggagtgatgccacctcagttcaagaaagacttggat
tcctatctcaaaacccgttctccagtcacctttttatctgacttgcgaagcaacctacaa
gtatcaaatgaacctggcaaccgctacaacatccagctgattaatgcactagtgctctac
gtaggtactcaagctattgcacacattcacaacaaaggtagcacaccctccatgagcacc
attactcactcagctcacatggacatcttccagaatttggcagtagacctggatactgaa
ggccggtacctcttcctgaacgccatcgccaaccagctgcgctaccccaacagtcacacc
cactacttcagctgcaccatgctctacctgtttgcagaggccaacacagaggccatccag
gagcagatcaccagggttctcttggaacgactgattgtaaataggcctcatccctggggt
ctccttattacattcattgagctgataaaaaatccagcctttaagttctggaaccatgag
tttgttcactgtgctccagaaattgagaagttgttccagtcggttgcacagtgctgcatg
gggcagaagcaggcccagcaagttatggaagggactggtgccagttag
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integrated database retrieval system
