Cinclus cinclus (white-throated dipper): 134048813
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Entry
134048813 CDS
T10813
Symbol
PBRM1
Name
(RefSeq) protein polybromo-1 isoform X1
KO
K11757
protein polybromo-1
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
134048813 (PBRM1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccic03021
]
134048813 (PBRM1)
03036 Chromosome and associated proteins [BR:
ccic03036
]
134048813 (PBRM1)
Transcription machinery [BR:
ccic03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
134048813 (PBRM1)
Chromosome and associated proteins [BR:
ccic03036
]
Eukaryotic type
Chromatin remodeling factors
PBAF complex
134048813 (PBRM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bromodomain
BAH
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
134048813
NCBI-ProteinID:
XP_062356793
LinkDB
All DBs
Position
12:complement(15181295..15232849)
Genome browser
AA seq
1711 aa
AA seq
DB search
MRRLAFRGAGSTLVNLKKLDSMGSKRRRATSPSSSVSGGDFDDAHHSTNIPGPSRKRRRL
SNLPTVDPIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQ
QKLKMEEYDDVNVLTADFQLLFNNAKAYYKPDSPEYKAACKLWELYLRTKNEFVQKGDAE
EDDDDEEGHDNQANSELSSPGYLKEILEQLLEAIAVATNPSGRLISELFQKLPSKVQYPD
YYAIIKEPIDLKTIAQRIQNGTYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANAIKKI
FNMKKAEIEHSELAKSSLRIRTASNLAASKLTGPSSQGKGSVGDERNSSNKYYRNKRSAQ
GDRLSAITMALQYGSESDEDAALAAAARYEEGESEAESITSFMDTSNPLYQLYDTVRSCR
NNQGQLISEPFFHLPSKKKYPDYYQQIKTPISLQQIRTKLKNHEYETLDQLEADLNLMFE
NAKRYNVPNSAIYKRVLKMQQVMQAKKKELARRDDIEDGDSMISSATSDTGSSKRKSKKN
IRKQRMKILYNAVLEAREPGTGRRLCDLFMVKPSKKDYPDYYKIILEPMDLKMIEHNIRN
DKYTAEEAMIEDMKLMFRNARHYNEEGSQVYNDAHMLEKILKEKRKELGPLAEDDDVASP
KLKLSRKSGISPKKSKYMTPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYY
VTIKKPVDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNEPESLIYKDALVLHKVLL
ETRREIEGDEDSHVPNVTLLIQELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVDPNFPNK
PPLTFDIIRKNVENNRYRRLDLFQENMFEVLERARRMNRTDSEIYEDAVELQQFFIKIRD
ELCKNGEILLSPALSYTTKHLHNDVEKEKKEKLPKEIEEDKLKREEEKREAEKSEDSSGS
AGLSSLHRTYSQDCSFKNSMYHVGDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYGCW
FYRPNETFHLATRKFLEKEVFKSDYYNKVPVSKILGKCVVMFVKEYFKLCPENFRDEDVY
VCESRYSAKTKSFKKIKLWTMPVSSVRFVPRDVPLPVVRVASVFANTDKIDEEKHSETLE
DSKVGESILHLEKDKEDVPVEMSNGEPGCHYFEQLCYNDMWLKVGDCVFIKSHGLVRPRV
GRIEKMWVRDGAAYFFGPIFIHPEETEHEPTKMFYKKEVFLSNLEETCPMTCILGKCVVL
SFKDFLSCRPTEISENDVFLCESRYNESDKQMKKFKGLKRFSLSAKVVDDEIYYFRKPIV
PQKEPSPLLEKKIQQLEAKFAELEGGDEDMEEMGEEEGDMTETPSMPQLQAPLASDLDIM
PYTPPQSTPKSVKGNTKKEGSKRKINMSGYILFSSEMRAVIKAQHPDYSFGELSRLVGTE
WRNLEATKKAEYEERAAKVAEQQERERAAQQQNSSPRAGTPVGALMGVVPPPTPMGMLNQ
QLTPVAGMISGYPPVLPPLQGPVDGIVSMGSMQPLHPGVPPPHQLPPGMPGIPGIPPPGV
IGQNVSPMVGTPAPGASPFGQQIGILGPPGQQAPPPYPGQSPASQPVMQQPSTPMFVSPP
PKTQRLLHSEAYLKYIEGLSAESNSISKWDQTLAARRRDVHLSKEQESRLPSHWLKSKGA
HTTMADALWRLRDLMLRDTLNIRQAYNLENV
NT seq
5136 nt
NT seq
+upstream
nt +downstream
nt
atgaggagattggcttttcgaggtgctggctctactctggtaaatctgaagaagttggat
tccatgggttccaagaggcgaagagctacctctccttccagcagcgtcagcggtggagac
ttcgatgatgcccatcactccaccaacattccaggcccaagcaggaagaggaggagactt
tccaatctcccaactgtagatcctattgctgtctgccatgagctctacaacaccatcaga
gactacaaagatgagcagggcaggcttctttgtgagctcttcatcagggcacccaagaga
agaaatcagccagattattatgaagtggtttctcagccaattgatttaatgaaaatccaa
caaaagctgaagatggaggaatatgatgatgtgaatgtgctgactgctgatttccagctt
ctctttaacaatgcaaaggcttactataagccagattctcctgaatataaagcagcctgc
aaattatgggagctgtatttgcgcacaaaaaatgaatttgttcagaaaggtgatgctgag
gaggatgatgatgatgaggaaggacatgacaatcaagcaaattctgaattatcatctcca
ggttacctgaaggaaattctggagcagcttcttgaagctatagctgttgccacaaacccc
tcaggacgcctcataagtgaactgtttcagaaacttccttccaaagtgcaatatccagat
tattatgcaataataaaggaacccatagatcttaaaactattgcccaaaggatacagaat
ggaacttacaaaagcattcatgccatggccaaggatatagatcttctggcaaagaatgcc
aaaacctacaatgagcctggatcccaagtattcaaggatgcaaatgcgattaaaaagata
tttaatatgaaaaaggctgagattgaacacagtgagttggccaagtcaagtctccgaatc
aggactgcatcaaatttggctgcttccaagctgacaggtccttcctcacagggtaaaggc
agtgttggggatgagagaaattcttctaacaaatattatcgtaacaaaagatcagcccaa
ggggatcgtttatcagcaataaccatggcattgcaatatggatcagaaagcgatgaggat
gcagctttggctgctgctgctcgttatgaagagggggagtctgaagctgagagcattacc
tccttcatggacacttctaatcctctttaccagctttatgatacagttagaagttgccga
aataaccagggccagctcatctctgagccctttttccacttgccctctaagaaaaagtat
cctgattattatcagcaaattaaaacacccatttcattgcagcagatcagaaccaagctg
aagaatcatgagtatgaaactttagatcagttggaggctgatctgaatttgatgtttgaa
aatgccaagcgctacaatgtccccaattctgccatctataaaagagtgctgaaaatgcag
caggttatgcaggcgaagaagaaggagcttgctaggagagatgacattgaggatggggac
agcatgatttcttctgctacatctgatactggaagctcaaaaaggaaaagtaaaaagaac
atacgaaagcagcggatgaagatcttgtacaacgctgttctggaagctcgagagcccggc
acgggcaggcggctctgtgatctgttcatggttaagccatccaaaaaggactacccagac
tactacaaaatcatcctggagccaatggacttgaagatgatagagcacaacatccgcaat
gacaagtacacggcggaggaggccatgattgaggacatgaagctcatgttccggaacgcc
aggcattacaacgaggaaggctcccaggtgtacaatgatgcccatatgctggaaaagatc
cttaaagaaaaaaggaaagagctgggacccttggctgaagatgatgatgttgcatcccct
aaactaaagctaagtaggaaaagtggcatttctcccaagaagtccaagtacatgactcca
atgcagcagaagctgaacgaggtgtatgaggccgtgaagaactacacggacaagcgcggg
cggcggctgagcgccatcttcctgcggctgccctcccgctccgagctccccgactactac
gtcaccatcaaaaagcccgtggacatggagaagatcaggagccacatgatggcaaataaa
taccaggacatcgactccatggtggaggactttgtcatgatgttcaacaacgcctgtacc
tacaacgagccggagtctttgatttataaagacgccctggtcctccacaaagttttgctt
gaaactcggagggaaatagaaggagatgaggattctcatgtacccaatgtcactttgctg
attcaggagcttatccataacctctttgtatctgttatgagccaccaggatgatgagggc
agatgctacagcgactccttagctgagattccagctgttgatcccaacttcccaaataaa
cctcctctgacttttgatattatccgaaaaaatgttgaaaataatcgctataggagatta
gatttgttccaggagaacatgtttgaggtactggagagggcacggagaatgaacaggact
gattcagagatctatgaggatgcagtggaacttcagcagttcttcattaaaattcgagat
gaactgtgtaaaaatggagagattctgctgtcacctgctctcagctacaccaccaagcat
cttcacaatgatgtagagaaggaaaagaaggaaaagctgcccaaagaaatagaggaagat
aagctcaaaagggaggaggagaagagagaagctgaaaagagtgaagattcctctggatca
gctgggctgtcaagtttgcataggacctacagccaggactgcagcttcaagaacagcatg
taccatgtgggggattatgtgtacgtggagcctgcagaggccaacttgcagcctcacatc
gtctgcattgagaggctgtgggaagattcagctggagaaaaatggctctatggctgctgg
ttttatcgaccaaatgaaacttttcatcttgcaacacgaaaattcctggagaaagaagtt
tttaaaagtgattattacaataaagttcctgttagcaaaattttaggcaaatgtgtggtc
atgtttgtcaaggaatattttaaattgtgccctgaaaacttcagagatgaggatgtctat
gtgtgcgagtcgcgctattctgcaaagacaaagtcttttaaaaagattaaactgtggact
atgcctgtgagctctgtcagatttgtcccacgagatgtgcccctgcctgtggtcagagtt
gcttctgtgtttgccaatacagacaaaatagatgaggaaaagcacagtgaaacactggag
gacagtaaggtgggagaaagtatccttcatcttgaaaaggacaaagaagatgttccagta
gaaatgtccaatggggaacctggttgccattactttgaacagctctgctacaatgacatg
tggctgaaggttggggactgtgtcttcataaaatcacacgggctggtgcggcctcgtgta
ggaagaattgagaagatgtgggtacgagatggagctgcgtatttctttggtccaatcttt
atacaccctgaagaaactgagcatgagccaacgaaaatgttctacaagaaggaggtgttt
ttgagtaacttggaggagacctgtcccatgacttgcattttgggaaagtgtgtcgttctg
tcattcaaagacttcctctcctgcagaccaacagaaatctctgaaaatgatgtttttctt
tgtgagagccgctacaacgaaagcgacaaacaaatgaagaaattcaagggattgaagagg
ttttcactgtctgcgaaagttgtagatgatgaaatatactattttagaaaacccatagtt
cctcagaaagagccatctcctctactggaaaagaagattcagcagctggaagcaaaattt
gctgagttggaaggaggtgatgaggacatggaagagatgggagaagaggaaggtgatatg
actgaaacaccttctatgcctcagcttcaggcccccttggccagtgatttggatataatg
ccttatactccaccacagtccactcccaagtctgttaagggcaacaccaagaaggaggga
tcaaaaaggaagatcaacatgagtgggtacatcttgtttagcagcgagatgagagctgtg
attaaagctcagcatcctgactactcctttggagagctcagcagacttgtaggaactgaa
tggagaaacttggaagcaacaaagaaagcagaatatgaagagcgggcagctaaagttgct
gagcagcaggagagagagcgagcagcacagcagcagaattcctccccccgggcaggcact
cctgtcggggctcttatgggggtggtgccgccaccaacaccaatgggaatgctcaatcag
cagttgacacccgttgcaggcatgataagtggctatccaccggtgctgccacctttgcag
ggcccagttgatggcattgttagcatgggcagcatgcagccacttcacccaggggtgcca
ccaccccaccagctcccgccaggtatgccaggcatcccaggcatcccaccacccggtgtt
ataggccaaaatgtgtcccccatggtaggcactccagcaccaggagcaagtccttttgga
cagcagatcgggatcctgggcccgccgggtcagcaggcacccccaccataccccgggcag
agccctgccagccagcccgtgatgcagcagcccagcacccccatgtttgtctcccctcca
ccaaagacacagaggctcctccattctgaagcctacctgaaatacattgaggggctcagt
gctgagtcaaatagtatcagcaagtgggaccagacccttgcagcgcggaggcgagacgtg
cacttgtccaaggagcaggagagccgcctgccctcacactggctcaagagcaaaggggct
cacaccaccatggctgacgcgctgtggcgcctgcgggacctgatgctgcgggacaccctg
aacatccgccaggcctacaacctggagaatgtgtag
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integrated database retrieval system
