Cinclus cinclus (white-throated dipper): 134048892
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Entry
134048892 CDS
T10813
Symbol
MBD4
Name
(RefSeq) methyl-CpG-binding domain protein 4
KO
K10801
methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
134048892 (MBD4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ccic03036
]
134048892 (MBD4)
03400 DNA repair and recombination proteins [BR:
ccic03400
]
134048892 (MBD4)
Chromosome and associated proteins [BR:
ccic03036
]
Eukaryotic type
Heterochromatin formation proteins
MBPs (metylated DNA binding proteins)
134048892 (MBD4)
DNA repair and recombination proteins [BR:
ccic03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
134048892 (MBD4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MBD
HhH-GPD
Motif
Other DBs
NCBI-GeneID:
134048892
NCBI-ProteinID:
XP_062356951
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All DBs
Position
12:484576..488271
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AA seq
520 aa
AA seq
DB search
MSGAREMAAGGPAGGSRGAAAAAAAWPGPSPGSGDHGPAGPSPVPRGWQRVSSRRRAGRT
AGRIDVYFVSPEGKKLRSKRELVEYLQKTGETTLKAADFDFTAPRGSTCSGLRGCGAGAV
RTHLEKVDCQSKVQELHAQNGAEVGIQNIQAGNGHLEDATPTVESTDLVMESTNPEESLK
TKRKGAGRKSVQTRRHGKGSERRNQGDSKSKRQRRLSDTLETECVQNKRVHRQTDTRGAD
SQGVCDAGADPVDAGKALSGMSRTWLRSVAGSQRELGHLLKEGLCSSDTPAATSEGKSYG
LETGKVPDPRDLGQQNVKSDTEVGAEPWDRTSCTAVTVLPEESVLRTRVERRKTSPYFST
KYSKEAPSPPRRKALRKWTPPRSPFNLIQETLFHDPWKLLIATIFLNKTSGKMAIPVLWE
FLKKYPSPEVARAADWKDMSELLKPLGLYELRAKTIIRFSGEYLSKAWRYPIELHGIGKY
GNDSYRIFCVNEWKEVQPQDHKLNVYHTWLWENHKKLSID
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgagcggcgcgcgggagatggcggcgggcggccccgcgggcggcagtcgaggcgcggcg
gcggcggcggcggcatggcccggccccagccccggctccggggaccacggcccagcgggg
cccagccccgtcccccgcgggtggcagcgggtgagcagccgcaggcgggcgggcaggacg
gccgggaggatcgacgtgtacttcgtgagtcctgaagggaagaagctgaggtcaaaacga
gaacttgtggagtatttacagaaaactggagagacaactttgaaagcagcagattttgat
ttcacagctcctcgagggagcacatgctcagggctgaggggatgtggtgcaggagctgtg
aggactcacctggaaaaggtggattgtcagagcaaagtgcaggagctccatgcacagaat
ggtgctgaggttggaattcagaacatccaggctgggaatggacatctggaagatgctaca
cctactgtggaaagcacagatttagtaatggaaagcacaaacccagaggagagtttgaaa
accaaaagaaagggggcaggtaggaaaagtgtccaaaccaggagacatgggaagggctca
gaaaggaggaaccaaggtgactccaaaagcaagaggcagagaagactctctgacacactg
gagactgagtgtgttcagaacaagagagtccacagacagacagacacacgtggagctgac
agccagggtgtgtgtgatgcaggtgctgaccctgtggatgcagggaaagctctgtcagga
atgtccaggacatggctgaggtcagtggctggctcacagagggagctgggtcacctgctg
aaggaggggctatgctccagtgacacacctgctgcaacgtctgaggggaaatcctatgga
ctggagacagggaaggtaccagatccgagggatctgggtcagcagaatgttaaatctgac
accgaggtgggtgctgagccatgggacaggacaagctgcacagcagtaacagtgttacca
gaagagtctgtcctgcgcacacgagtggagagaaggaaaacgagtccatatttttccacc
aaatacagcaaagaagcccccagcccacccagaagaaaggccctcagaaaatggactcct
ccacgttctcctttcaatcttatccaagaaacactcttccatgatccgtggaaacttctc
attgccaccatatttctcaacaaaacttcaggaaaaatggccattccagtgctctgggag
ttcctgaagaaatatccttctcctgaggtagccagggctgcagactggaaagatatgtca
gagctgctcaaacctcttggcctttacgaactcagggccaaaaccatcatcaggttctca
ggtgagtacctgagcaaggcatggcgttaccccatcgagctgcacggcatcggcaagtac
ggcaacgactcctacaggatcttctgtgtgaacgagtggaaggaggtgcagccacaggac
cacaagttgaatgtgtaccacacatggctgtgggagaaccacaagaagctgagcattgac
tga
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