KEGG   Cinclus cinclus (white-throated dipper): 134049021
Entry
134049021         CDS       T10813                                 
Symbol
SKIC8
Name
(RefSeq) superkiller complex protein 8
  KO
K12602  WD repeat-containing protein 61
Organism
ccic  Cinclus cinclus (white-throated dipper)
Pathway
ccic03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ccic00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    134049021 (SKIC8)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccic03019]
    134049021 (SKIC8)
Messenger RNA biogenesis [BR:ccic03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     134049021 (SKIC8)
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_WDR3_1st WD40_Prp19 Beta-prop_THOC3 WD40 Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd WD40_CDC20-Fz Beta-prop_WDR36-Utp21_2nd WDR55 WD40_Gbeta EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd ANAPC4_WD40 Beta-prop_WDR36-Utp21_1st Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st Beta-prop_TEP1_C Beta-prop_IFT122_1st Beta-prop_EML WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_SCAP Beta-prop_ACSF4 Beta-prop_WDR19_1st Beta-prop_Aladin Beta-prop_VPS8 Beta-prop_Vps41 Beta-prop_EIPR1 Beta-prop_WDR35_TULP_N Beta-prop_WDR41 WD40_RFWD3 Beta-prop_NWD2_C Beta-prop_DCAF4 Tricorn_2nd Beta-prop_HPS5 PROPPIN Beta-prop_Nup120_160 Beta-prop_SPT8 Beta-prop_IFT140_1st Cytochrom_D1 NBCH_WD40 Ge1_WD40 Beta-prop_WDR75_2nd WDR54 Beta-prop_NUP159_NUP214 VPS8_N WD40_like Beta-prop_DCAF12 Beta-prop_IFT122_2nd DUF2415 Vgb_lyase
Other DBs
NCBI-GeneID: 134049021
NCBI-ProteinID: XP_062357152
LinkDB
Position
13:complement(1278585..1285606)
AA seq 305 aa
MTTQYGILFKQEQAHDDAIWSVAWGKNKNDGSETVISGSLDDLVKVWKWSDEKLDLQWTL
EGHQLGVVSVDISHTGAIAASSSLDAHIRLWDLDTGKQIKSIDAGPVDAWSLAFSPDSQY
LATGSHVGKVNIFGVETGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG
KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHGSWVLNVAF
CPDDTHFVSSSSDKSVKVWDAGTRTCVHTFFDHQDQVWGVKYNGSGSKIVSVGDDQEIHI
YDCPV
NT seq 918 nt   +upstreamnt  +downstreamnt
atgaccacacagtacggcattctcttcaagcaagagcaagctcacgatgatgccatctgg
tcagttgcctggggaaaaaataaaaatgatggttctgaaacagtgatctctggttctttg
gatgacctggtgaaggtctggaagtggagtgatgagaagctggaccttcagtggactctg
gagggtcaccagctgggggtggtgtcagtggacatcagccacactggggccattgcagca
tccagctccctggatgcccacatccgcctctgggacctggacactggcaaacagatcaaa
tccatagatgctggtcctgttgatgcttggtccctggctttttcacctgattcccagtac
cttgcaacaggaagtcacgtggggaaagtaaatattttcggtgttgaaactggaaagaaa
gaatattctctagacaccagagggaagttcatccttagcattgcatatagtccagatgga
aaatacttggccagtggagcaatagatggcattatcaatatttttgatattgcaactgga
aaacttctgcatacgctagaaggccatgccatgcccatccgctcgctgaccttctcccct
gactcccagctcctggtcaccgcctccgacgatggctacatcaaaatctacgacgtgcaa
catgcaaacctggctggcacattaagtggtcacggatcctgggttttaaatgtagcattc
tgtcctgatgatacccattttgtttccagttcatctgataaaagtgtaaaagtttgggat
gctggaacgaggacctgtgtccatactttctttgaccatcaagatcaggtttggggagtg
aagtacaatggaagtgggtccaaaattgtgtctgttggtgatgaccaagaaattcatatt
tatgactgcccagtttaa

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