Cinclus cinclus (white-throated dipper): 134049557
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Entry
134049557 CDS
T10813
Symbol
RAD50
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic03440
Homologous recombination
ccic03450
Non-homologous end-joining
ccic04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
134049557 (RAD50)
03450 Non-homologous end-joining
134049557 (RAD50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
134049557 (RAD50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccic03032
]
134049557 (RAD50)
03400 DNA repair and recombination proteins [BR:
ccic03400
]
134049557 (RAD50)
DNA replication proteins [BR:
ccic03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
134049557 (RAD50)
DNA repair and recombination proteins [BR:
ccic03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
134049557 (RAD50)
BRCA1-C complex
134049557 (RAD50)
NHEJ (non-homologous end-joining)
MRX complex
134049557 (RAD50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
SbcC_Walker_B
SMC_N
AAA_15
DUF2703
AAA_29
AAA_13
Motif
Other DBs
NCBI-GeneID:
134049557
NCBI-ProteinID:
XP_062358068
LinkDB
All DBs
Position
14:complement(10474484..10493766)
Genome browser
AA seq
1312 aa
AA seq
DB search
MSRIEKMSILGVRSFGVEDKDKQIITFFNPLTILVGPNGAGKTTIIECLKYISTGDFPPG
TKGKTFVHDPKVANETDVRAQIRLQFRDVNGELIAVQRSMVCTQKGKTPEFKTLESVITR
TKHGEKVSLSSKCAEIDREMISALGVSKSVLNNVIFCHQEESNWPLSEGKALKQKFDEIF
SATRYIKALEALRQVRLQQSLKIKECQTELKYLKQNKEKAQEIQDHLSNREAQLAASKEN
VMSIENQLEPLKSSLAVVEQNLTKVMRLDNDVKALESRKRQMEKDNQDLRQKMEKVFQGT
DEQLRDRYQNHQRIVKEKEKRLLDCKRDLDRATKECQRFNSEKSELLIERGRLQLQADRH
QEHTVTRDSLIQSLAAQLELDGFEQAPFTERHIASFRKLVKDRQERDTEAANRMMREFAQ
KEAMKQKQIDEIRDKKTGLESTIDLKSDIQKKKQAELKNVKCELQQLEGFSDRISELDEE
IGKMEHELEKAERSSNVETLEQEVQTLQNEKINLDKALRRLDQEMEQLNLHTTTITQMEM
LKKDKAEKEDQIRKVKSRHSEELTSLLGYFPNKKQLEDWLHGKNKKINQTRDTLANLNKQ
LASVEYDKTYASNELKKKEAQLSCHEAKLFDVCGSQDFDSDLSKLQDEIEKSSKQRAVLA
GATAVYSQFITQLTEESQSCCPVCQRVFQTEAELQDVISDLQSKLRLAPDKLKSTESELK
RKEKKRDEMMSLKPLRQTIVELQDKEIPDLRNKIQNANRDLTGLKGEIEEQESLLQTALS
EEDGAKAHLQDITLMERYQTDIRDVERKIAQQEAKLLGVDLSRTVLQVSQEKQEKKHLWD
TVTGKIELNQKLKQDQQSQIQQLKSAVNELKAEKLQIVSSMQRRRQLEEQTVELTTDVQS
LCREIKEAKEQVLPLDAMLDKLQQEKEELVNKRTARNKEAQEKMSAINEKVKDINKYMKE
IENYIQQGKEDYKKQKESELDEVNSHLAACEKQKEKISKEMEMTRQDIDTQKIQERWLED
NLTLRKRNDELKEVEDNIKQLMKEMGEIKVPQMKNEQKHLEEKIESLKRNHHIALGRQRG
FEEEIVRFRKELREPQFKDAEEKYRDMMIVMRTTELVSKDLDLYYKALDKAIMTFHSIKM
EEINKIIRDLWRSIYRGQDIEYIEIRSDVDENVSATDKRRNYNYRVVMVKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRLHQR
NFQLLVITHDEDFVELLGRSEYVETFYRIKKNIDQCSEIMKCSVSSLGSCVH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaggattgaaaaaatgagtatcctcggagtgaggagttttggggtagaagataaa
gacaaacaaattatcactttctttaatccattaactattttggtgggaccaaacggtgca
ggaaaaacgactatcattgaatgtcttaaatatatatccactggtgattttcctcctggc
accaagggaaaaacatttgttcatgatccgaaggttgccaatgaaactgatgttagagct
cagattcggttacagtttcgagatgtcaacggggagctcatagctgtccagcgctccatg
gtctgtacccagaaaggcaagactccagaatttaaaacactggaatctgtcattactaga
acaaagcatggtgagaaggtcagtctgagttccaagtgtgctgaaatagatcgggagatg
atcagcgcccttggtgtttccaaatctgtccttaacaatgtcattttctgtcaccaagaa
gaatccaactggccattaagtgaagggaaggccctgaaacaaaaatttgatgagatcttt
tcagcaacaaggtatatcaaagcactcgaagctctgcgtcaggtacgactgcagcaaagc
ttgaaaataaaagagtgtcagacagaactgaaatatctaaaacagaataaagagaaagca
caggaaatccaggatcatctaagcaacagagaagctcaactggctgcttctaaggagaat
gtgatgtcaattgagaaccagcttgagcctctaaagagctctctggcagtagttgaacag
aatctcacaaaagtaatgaggttggacaatgatgtgaaggccctggagagcaggaagagg
cagatggaaaaagataatcaagatttgcgacaaaaaatggaaaaggtttttcaaggaaca
gatgaacaactaagggatagataccagaaccaccagagaatagtgaaggagaaggagaag
agattgttggactgtaagcgtgatttagatagagccactaaagagtgccagagatttaac
agtgagaaatcagagctgcttattgaacgaggtcgtcttcaactgcaggcagatcgtcac
caggagcacactgtgaccagggattccttaattcagtctctggcagctcagctggagtta
gatgggtttgagcaggcacctttcactgaaaggcacattgccagttttcgcaagttggtg
aaggacagacaggagagagatacagaagcagcaaatcgtatgatgagagaatttgcacag
aaagaagcaatgaaacaaaaacagatagatgaaataagagacaagaaaactggattagaa
agtaccattgacctgaaatcagacattcagaaaaagaaacaagcagaactgaagaatgta
aaatgtgaactgcagcagttggaggggttttcagacaggattagtgagttggatgaggag
attggcaagatggaacatgagctggagaaggctgagaggagcagcaacgtagaaacactg
gaacaggaagtacagactctgcaaaatgagaaaataaacctggacaaagctcttaggagg
ttggatcaagagatggagcagttgaatctgcacaccacaacaattacccaaatggagatg
ctgaaaaaagacaaagcagagaaagaagatcagattagaaaagtaaagtcaagacattct
gaggagctaacatcactgctgggatactttcccaataaaaaacaacttgaagactggctt
catggtaaaaataaaaagattaatcagacaagggatactcttgctaatcttaacaagcag
ctggcttcagtagaatatgataaaacttacgccagtaatgagctaaaaaaaaaagaagcc
cagttgtcctgtcatgaagcaaaactttttgatgtttgtggaagtcaagattttgacagt
gacctgagcaaacttcaagatgaaattgaaaaaagttccaaacaacgagctgtgcttgct
ggagccactgcagtttattcacagttcattacacagctgacagaggagagccagtcttgt
tgtccagtttgccaaagagtttttcagacagaggctgaactgcaagatgtcattagtgat
ctgcaatcaaaactgcgccttgccccagacaaactgaagtcaacagagtctgagcttaaa
agaaaagagaaaaaacgtgatgaaatgatgagtcttaaaccactgcggcaaactatagtt
gaactccaagataaggaaattccagacctgaggaacaagatccagaatgcaaatagagat
ttaacaggcctgaagggtgagatagaagaacaagaatcactcctccaaacagctttgtct
gaggaagacggtgccaaagcacatttacaggatataacactgatggaaaggtatcagact
gatattagggatgttgaacgaaaaattgctcagcaggaggctaagctgctaggtgtcgat
ttaagtagaactgtgcttcaagtaagccaagaaaaacaagagaaaaaacacttgtgggat
acagttactggtaaaattgagttaaatcaaaaactcaagcaggaccagcaaagccagatt
cagcagctgaagagtgcagttaatgagctcaaagcagagaagctgcagattgtcagcagc
atgcagcggcggcggcagctggaggagcagactgtggagttaaccactgatgttcagtcc
ttatgcagagagatcaaggaagcaaaagaacaggtacttcctttggatgcaatgttagac
aaattgcagcaggagaaggaggaactagtgaataaaaggactgcacgtaataaagaagca
caagagaagatgagtgccataaatgaaaaagttaaagatataaacaaatacatgaaagaa
attgaaaactatattcaacaaggaaaagaagactataaaaagcaaaaggagtctgaactt
gatgaagtaaattctcatttggctgcctgtgagaaacagaaggaaaagataagtaaagag
atggaaatgacccgacaagatattgacactcaaaagatacaggaaaggtggctggaggat
aatctcactttgaggaagcggaatgatgagctgaaagaagttgaagacaatataaaacaa
cttatgaaggagatgggagaaattaaagtcccccagatgaaaaatgaacaaaaacatttg
gaggagaaaatagaatctctgaaaaggaaccatcacattgcacttggccgccagcgtggg
tttgaggaggagattgttcgctttagaaaggagctcagagagccacagttcaaagatgca
gaagaaaaatacagggacatgatgattgtcatgagaacaacagagttagtgagcaaagat
ctggacctttattacaaggctcttgataaagcaataatgacatttcatagcataaaaatg
gaagaaattaacaaaataattagggacctgtggcgaagcatttacagaggacaagatatt
gaatatatagaaattcgctctgatgtagatgagaatgtctctgccactgacaaaagaaga
aattacaattacagggtagtaatggtgaagggagatacagcactggatatgcgaggaaga
tgtagtgctgggcaaaaggtgcttgcttctctcatcattcgccttgctctagcagaaaca
ttctgtctcaactgtggcattctggccctcgatgaacctacaaccaaccttgaccgagaa
aacattgagtccctggcacatgccctagtagagattataaagagccgcttacatcaacgc
aactttcagcttctggtgattactcatgatgaagattttgttgaacttctgggccgttct
gagtatgtggaaacattctacaggataaagaagaatattgaccagtgctctgagatcatg
aaatgcagtgtcagctccctgggctcctgtgttcattag
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integrated database retrieval system
