Cinclus cinclus (white-throated dipper): 134049661
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Entry
134049661 CDS
T10813
Symbol
PCDH1
Name
(RefSeq) protocadherin-1 isoform X1
KO
K16498
protocadherin delta 1
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
134049661 (PCDH1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ccic01009
]
134049661 (PCDH1)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ccic04515
]
134049661 (PCDH1)
Protein phosphatases and associated proteins [BR:
ccic01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
134049661 (PCDH1)
Cell adhesion molecules [BR:
ccic04515
]
Cadherins
Protocadherins
134049661 (PCDH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
K319L-like_PKD
Cadherin_4
TMEM154
Mid2
Syndecan
Motif
Other DBs
NCBI-GeneID:
134049661
NCBI-ProteinID:
XP_062358223
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All DBs
Position
14:complement(4681142..4733915)
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AA seq
1273 aa
AA seq
DB search
MEPDFSEQAGAASRWCSHATERSMCAAKGAAQQVGVAQRGDALPSSLRRSGKDFPASWRE
IRAATARRAAPMQRRMNPLASCLGLWLLCQLPALASGTRAIYKVQEEQPPNSLIGSLASD
YGLPDMGHLYKLEVGAPYLRVDGKTGDIYTTETSIDRENLRECQHLLPGDPCYLEFEVSI
TNLNANSSPRLLEGQIEVLDINDNTPNFASPVLTLSIPENTNIGTLFPIPLAMDRDSGPN
GVASYELMAGPEAQELFGLQVAEDQDEKQPQLIVMGNLDREQWDSYDLTIKVQDGGNPPR
ASSALLRITILDMNDNEPKFEKALYEAELSENSPVGHSVLQVKANDSDQGSNAEIDYSFH
QASDIVRRLLRLDRTTGLITVQGPIDREDIGTLKFSVMAKDKGANPKSARTQVVVTIKDM
NDNAPSIEIRGIGLVTHQDGMANISEDVPVETAVALVQVSDRDEGENAVVTCVVAGDVPF
QLRQASETGSDSKKKYFLQTTTPLDYESVKEYTIEIVAVDSGNPPLSSTNSLKVQVMDVN
DNAPVFSQSFTEVAFPENNEPDELVMEVSATDADSGSNAKLVYSLVTDPSSKGSFTIDPD
SGEIRVKAVLDREQRERYEFLVVAEDKGSPSKQGTASVAINVMDRNDNDPKFMLSGYNFS
VMENMPPLSPVGMVTVIDADKGENARIQLSVEQDNGDFVIQNGTGTILSSISFDREQQST
YTFRLKAVDGGDPPRSAYVGVTINVLDENDNAPFITSPSNATYKHILPHTSPGQQVSKVK
AEDIDSGINAELIYSITGGNPFELFQISPQSGDITLEKEILRKHHGLHRLVVRVNDKGKP
SRHGTALVHFYVNETLANRTLLDTLVGHSLDTPLDIDIAGDPEYERSKQRSNILFGVIAG
IVAVTLVIVLVVLVRYCRQREAKSGYQAGKKETKDLYAPKQASKSGKSKGKVKKSKSPKP
PKPTEDEEETGLQKSLKFNLMNDSVSDSPRIHLPLNYPPGSPDLGRHYRSNSPLPSIQLQ
PQSPSASKKHQVVQDLPATNTFVGTGDNNSTGSEQYSDYSYRTNPQKYTNKQLPHRRVTF
SAASQAQDLQDPSQHSYYDSGLEESETPSSKSSSGPRIGPLALPEDHYERTTPDGSIGEM
EHPENDLRPLPDVAMTGTCTRECTEFGHSDTCWMPGQSSPSRRPKNALKLSTFVPYQDRG
SQEQVGNGSPRLSEERSTKMANLRLLPTYSAFSNSSHEPCKDSPMEEIPLTQTSDFQPAT
TPSAQTTKREIYL
NT seq
3822 nt
NT seq
+upstream
nt +downstream
nt
atggagccggacttctccgagcaggcaggcgcagcctctagatggtgcagtcatgcaacc
gagcggagcatgtgtgcagcgaagggcgctgcgcaacaggttggcgtagctcagcgggga
gacgcgctcccatcctcgctgcggcggagcgggaaggactttccagcatcctggcgagaa
atccgagccgcaaccgcccggagggcggctcccatgcagcgcaggatgaacccgctggcg
tcgtgcctgggcctgtggctcctctgccagctccctgccctggcctcggggacacgtgcg
atctacaaagtgcaggaggaacaaccccccaacagcctcatagggagcctggcctctgac
tacggcttacccgacatggggcacctctacaagctggaagtgggggccccatacctccgt
gtggatggcaagactggggacatctacaccacagagacctccatcgaccgggaaaacctg
cgggagtgccagcacctcctgcccggagacccctgctacctggagttcgaggtgtccatc
acgaacctgaacgccaacagcagcccgcgcctgctcgaggggcagatcgaggtgctcgat
atcaatgacaacacccccaacttcgcatcacccgtcctcaccctctccatccctgaaaac
accaacatcgggacactctttcccatccccctggccatggacagggactcgggccccaac
ggtgttgcctcctatgagctgatggctggtccagaggcgcaggagctctttgggctgcag
gtggccgaagaccaggatgagaagcagcctcagctgatcgtcatgggcaacctagaccgg
gagcagtgggactcctacgatctgaccatcaaggtgcaggatggggggaatcccccgcgg
gcgagcagtgccctgctccgcatcaccatcctggacatgaacgacaatgagcccaagttc
gagaaggccctgtacgaggcagagctctctgaaaacagccctgtggggcactctgtcctc
caggtgaaagccaacgattcagaccagggctccaatgccgagatcgactactccttccac
caggcctcggacatagtgcggcgcctgctgcgcctggaccgcaccacagggctcatcacc
gtgcagggccccattgaccgtgaggacatcggtaccctcaagttctccgtcatggccaag
gataagggcgccaaccccaaaagtgcccgcacgcaggtggtggtcaccatcaaggacatg
aacgacaatgcgccctccatagagatccgtggtatagggctggtcacccaccaggatggc
atggccaatatctcggaggatgtgccagtagagacagcagtggctctggtgcaggtgtct
gaccgagatgagggtgaaaatgccgtggtgacctgcgtggtggccggtgatgtcccattc
cagctgcgccaggccagtgagacgggcagtgacagcaagaagaaatatttcctgcagacc
accacaccactggactacgagtcagtgaaggagtacacgattgagattgtggccgtggac
tcggggaacccgcccctctccagcaccaactccttgaaggtgcaggtgatggatgtcaat
gacaatgcccctgtctttagccagagcttcactgaggtggccttccctgagaacaacgag
cccgatgagctggtcatggaggtgagtgccactgatgctgacagtggctccaatgccaag
ctggtttattccctggtgacagacccctcctccaagggctccttcaccattgaccctgac
tccggagagatccgggtgaaggcggtgctggaccgagagcagcgggaacgctacgagttc
ttggtggtggcggaagataagggcagccccagcaagcagggcacggcgtctgtggccatc
aacgtcatggacaggaatgacaatgaccccaagttcatgctgagtggctacaacttctcg
gtgatggagaacatgccgcccctcagccccgtgggtatggtgacagtcatcgatgctgac
aaaggagaaaatgcccggatccagctgtcggtagagcaagacaacggcgattttgtcatc
caaaatggcaccggcaccatcctctccagcatctcttttgaccgggagcagcagagcacc
tacaccttccgactcaaggcggtggatggcggggatccccccaggtctgcctacgtgggg
gtgaccatcaacgtcttggatgagaatgacaatgcccccttcatcacttccccctccaac
gccacctacaagcacatcctgccccacaccagccccggccagcaggtgagcaaggtcaag
gcagaggacatcgactcgggcatcaacgcagagctcatctacagcatcacaggaggaaac
cccttcgagctcttccagatctccccacagagcggggacatcactctggagaaggagatc
ctgcgcaagcaccacggcctgcaccgcctggtcgtgcgcgtcaacgacaagggcaagccc
tcgcggcacggcacggctctggtgcacttttatgtcaatgagacgctggccaaccgcacg
ctgctggacacgctggtagggcacagcctggacaccccactggacatcgacatcgccggc
gaccctgagtacgagcgcagcaagcagcgcagcaacatcctcttcggagtcatcgctggc
atcgtggccgtcaccctggtcatcgtgctggtggtcctggtgcgctactgcaggcagcgc
gaggccaagagcggctaccaggcaggcaagaaggagaccaaggacctgtacgcgcccaag
caggccagcaagagtgggaagagcaagggcaaggtgaagaagagcaagtctcccaagccg
cccaaacccacagaagatgaggaggagacggggctgcagaaatcgctcaagttcaacctc
atgaacgactccgtcagcgacagcccccggatccacctgcccctgaactaccctccaggc
agcccggacctgggccgccactaccgctccaactcgccgcttccatccatccagctgcag
cctcagtcaccctccgcctccaagaagcaccaagtggtgcaggacctgccggccaccaac
acctttgttggcaccggggacaacaactcgacgggctccgagcagtactcggactacagc
taccgcaccaacccccagaaatacaccaacaagcagttacctcatcgccgagtgacgttc
tctgcagccagccaggctcaggacctgcaggacccctcccagcacagctactacgacagc
gggctggaggaatccgagacccccagcagcaaatcttcatcggggccccgcattgggccc
ctggccctgcccgaggaccactacgagcgcaccactcccgatggaagcatcggggagatg
gagcaccctgagaacgatctccggcctctgcccgatgtagccatgactgggacctgcacc
cgggagtgcacagagttcggccactccgacacctgctggatgcctggccagtcctccccc
agccgcaggcccaagaacgccctcaaactctccacttttgtgccttaccaagacagaggg
agtcaagagcaagtcgggaatggcagccccagactgtcggaagagcgcagcaccaaaatg
gccaacctccgcctgctccccacgtacagtgccttctccaatagtagccatgagccctgc
aaggactctcccatggaggaaattcctctcacccagacctcggacttccagccagccacc
accccctcggcgcagaccaccaagagggagatctacctgtga
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