Cinclus cinclus (white-throated dipper): 134049681
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Entry
134049681 CDS
T10813
Symbol
PCDH12
Name
(RefSeq) protocadherin-12
KO
K16499
protocadherin delta 2
Organism
ccic Cinclus cinclus (white-throated dipper)
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ccic04515
]
134049681 (PCDH12)
Cell adhesion molecules [BR:
ccic04515
]
Cadherins
Protocadherins
134049681 (PCDH12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Motif
Other DBs
NCBI-GeneID:
134049681
NCBI-ProteinID:
XP_062358251
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All DBs
Position
14:2710520..2720205
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AA seq
1183 aa
AA seq
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MPRRCGGPEDAVGMRWPAGQPMAGRRGRGGSASSVLGLSRSALQLPALWWWYLFLSADAQ
EVATFTVQYRVLEEVPPGTVLGSLAEHFEGGESGEVAETFQLMETPGRFPLHVGSGDGVL
STAGRVDREQLCRHSDPCWVSFDVLAAQNPALIHVEVQVMDINDNAPRFPTAELELEISE
SASLRTRIPLDRALDADAGPNARCSYTLSPSEHFALEVVSGSDGMRHAELVVVKEVDREL
HSSFDLVLTATDHGEPPKSGSALIKVIVLDSNDNSPVFAESSLTVEVREDAQPGTLLVTV
TATDPDQGPNGEIEYSLSRHAPPEVLSTFSIDARTGSVLLRLPLDYEETHAYELDVQARD
LGANPIPAHCKVLVKVLDVNDNAPDVHVTWAARVPVLSEALPKDSFVALVTASDPDSGSN
GQVLCSLSQGYEHFRLKRTNSHSFALLTNASLDREQHAEYNLTLVVRDLGDLSLAVLKHL
TICISDVNDNAPTFEKVAYEAAVAENSEAPVFLLTVCATDPDLGFNGKVTYRILDPSVLG
LVSVDPVTGDVFALQAFDYEQVRSLEFLVTAEDGGHPKLASNISIRLAVLDQNDNAPIIT
TPAVVGGVATLSVLVNVDTGCCWVVPGNGSTQGAATNSTLMSCPGSPLLFSIVARDVDSG
INGALRYDLVGGGDAGLFILDPLLGQVSLNTSNASSLAGSQWELLVQVSDQGDTPLHTLA
RLCLLFRRHGAFSKMSAQDPGWPSLPVVLLICLAALLGGCLLLLALTLSLRKKDKKDGMA
YNCREAEDARRQQQLKKPHRQIQKADIHLVPLLWGRPREAEPPQPCQEEQPGTATPTSPQ
APLHLTPTLYRTLRNQRTQKGSEEQQGTFELPILQRRPCQPHRPKHLVKEAVTPPEAPLH
GKSLVKPPMGEPQVPPEPPVGAGGPGQPQPHQQILRSLVRLSLVALAEQSPTGEFAMESP
PVQQISQLLSLLHQGQFQPKTNYRGNKYTAKNGSSDLGVVTPGRAAGLDTGLDTGLDTDC
LSTKDSGHGESEVGDHDCDSAFELSVQQLVGEELETLLEPQAELALKRLTSADPEWVARL
SLPLTSSYKDNIFCPDSPCSPEDEEAARQEKPRTFETFGKGAGADPGGSGTRLASTFLSE
MSSLFEMILSQKVQVHGEVGTGLLRQLSARGHSLDLGDAAPGL
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atgccgaggcgctgcggtggccctgaggacgctgtggggatgcggtggccggcgggacag
cccatggcagggcggcggggccgcgggggctctgccagcagcgtgctggggctgagccgc
tcggcgctgcagctgccggcgctctggtggtggtacctgttcctgagcgccgatgctcag
gaggtggccacgttcacggtgcagtaccgggtgctggaggaggtgcccccggggaccgtc
ctagggagcctggccgagcacttcgagggcggtgagagcggcgaggtggccgagaccttc
cagctgatggagacccccgggaggttcccgctgcatgtgggcagcggggatggggtgctc
agcacggccgggcgggtggacagggagcagctgtgccgccacagtgatccctgctgggtg
tccttcgacgtgctggccgcccagaacccggccctgatccacgtggaggttcaggtgatg
gacatcaacgacaacgcaccgcgcttccccacggccgagctggagctggagatctcggag
agcgcgtccctgcggacgcggatcccgctggatcgagccctggatgccgacgccggcccc
aacgcccgctgctcctacaccctttcccccagcgagcactttgctctggaggtcgtctcc
ggctccgacgggatgaggcacgcggagctcgtggtggtgaaggaggtggacagggagctg
cactcctccttcgacctcgtgctaacggccactgatcacggggagccgccaaaatcaggc
agtgctttgatcaaagtcatcgtcctcgactccaacgacaacagccccgtgtttgcagag
agctccctgacagtggaggttcgggaggacgcccagcctgggaccctcctggtgacagtc
acggccactgaccccgaccagggtcccaatggggagatcgagtacagcctgagcaggcac
gcaccccccgaggtgctgagcaccttcagcattgatgcccgcacgggcagcgtcctcctg
aggctccctctggactacgaggagacccacgcctacgagctggacgtgcaggcgcgggac
ctgggcgccaaccccatcccggcgcactgcaaggtcctggtcaaggtcctggacgtcaac
gacaacgctcccgacgtccacgtcacctgggccgcgcgcgtgcctgtgctgtccgaggcc
ctccccaaggacagcttcgtggccctagtgacagccagtgaccccgactcgggaagcaac
gggcaggtgctctgctccctcagccagggctacgagcacttcaggcttaagaggaccaac
agccacagcttcgcgctgctgaccaacgcctcgctggaccgcgagcagcacgccgagtac
aacctgacgttggtggtgagggacttgggggacctgtccctggccgtactgaaacacctc
accatctgcatcagcgacgtcaatgacaacgcccccaccttcgagaaggtcgcctacgag
gctgccgtggctgagaacagtgaagcgcctgtcttcctgctcaccgtctgtgccactgac
cccgacctgggcttcaatggcaaggtcacctacaggatcctagacccctctgttttgggg
ctggtctcagttgaccccgtcaccggggatgtttttgccctccaagcttttgattatgag
caggtgaggagcctggagttcctggtgacagcggaggatggagggcatcccaagctggca
tccaacatttccatcaggctggctgtgctcgaccagaacgacaacgcacccataatcacc
acgccagcggtggtgggaggggtggccacgctctctgtgctggtcaatgtggacacaggg
tgctgctgggtggtccctgggaatgggagcacccagggggctgcgaccaattccactctc
atgtcatgccctggcagccccctcctcttcagcatcgtggccagggatgtggactccggc
atcaatggggctctccgctatgatctggtgggtgggggtgatgctgggctcttcatcctg
gaccccctcctgggccaggtgtccctcaacaccagcaatgccagcagcctggccggcagc
cagtgggagctgctggtccaggtgagtgaccagggggacacccccctgcacaccctggcc
cggctctgcttgctcttccggcgtcacggggccttctccaagatgtcagcacaggatcct
ggctggcccagtctccccgtggtgctgctgatctgcctggctgctctcctgggcgggtgc
ctactgctgctggcactcaccctgtccctgcgcaagaaggacaagaaggatggcatggcc
tacaactgccgggaggcagaggacgcccgcaggcagcagcagctcaagaagccccacagg
cagatccagaaggctgacatccacctggtccctctgctctggggacgcccccgggaggct
gagcccccccagccttgccaggaggagcagcctggcacggccacccccacatcaccacag
gctcctctccacctcacgcccactctctacaggaccctgagaaaccagaggacacaaaaa
ggctccgaggagcagcagggcaccttcgagctgcccatcctgcagcgccggccgtgccag
ccccaccgacccaaacacctggtgaaggaggctgtgaccccccccgaggcgccgctgcat
ggcaagagcttggtgaagccacccatgggagagccccaagtgccacctgagccacccgtg
ggtgcggggggaccagggcagccccagccccaccagcagatcctcaggagcctggtccgg
ctgtcgctggtggccctggcggagcagagcccgaccggggagtttgcgatggagtcaccc
ccagtgcagcaaatctcccagctgctctccctgctgcaccagggccagttccagcccaaa
acaaactacaggggaaacaagtacacggccaagaacggcagcagtgacctgggtgttgtg
acccctggcagggctgcagggctggacacagggctggacacggggctggacacagactgc
ctgagcaccaaggacagcgggcacggcgagagcgaggtcggcgaccacgactgtgacagc
gcctttgagctctcggtgcagcagctggtgggagaggagctggagaccctcctggagcca
caggcagagctggccctcaagaggctgacatctgcagacccagagtgggtggctcgtctg
tccctgcccctcaccagcagctacaaggacaacatcttctgccctgactcaccctgctcc
cccgaggacgaggaagctgcaaggcaggagaaaccgaggacctttgagacctttggcaaa
ggtgctggggctgaccctggtggcagtgggacgaggctggccagcacattcctgtcagag
atgagcagcctgtttgagatgatcctgtcccagaaggtgcaggtgcacggcgaggtgggc
acggggctgctacggcagctctcggcccgtgggcacagcctggacctgggggatgctgct
ccagggctgtag
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