Cinclus cinclus (white-throated dipper): 134049880
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Entry
134049880 CDS
T10813
Symbol
COL4A6
Name
(RefSeq) collagen alpha-6(IV) chain
KO
K06237
collagen type IV alpha
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic04382
Cornified envelope formation
ccic04510
Focal adhesion
ccic04512
ECM-receptor interaction
ccic04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
134049880 (COL4A6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
134049880 (COL4A6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
134049880 (COL4A6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
134049880 (COL4A6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ccic04147
]
134049880 (COL4A6)
00536 Glycosaminoglycan binding proteins [BR:
ccic00536
]
134049880 (COL4A6)
Exosome [BR:
ccic04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
134049880 (COL4A6)
Glycosaminoglycan binding proteins [BR:
ccic00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
134049880 (COL4A6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
134049880
NCBI-ProteinID:
XP_062358588
LinkDB
All DBs
Position
15:complement(12931706..12972104)
Genome browser
AA seq
1596 aa
AA seq
DB search
MGVPGFQGINGIPGHPGQSGPRGLPGLDGCNGTTGSRGISGPDGFPGLPGLPGRPGPKGL
KGEPVFAQGSLKGMKGENGLPGLDGVPGPKGFPGPIGPTGPIGLPGLQGPVGPPGPPGPK
GNMGLGFQGEKGEKGDVGLPGPPGPPPSTGILEFMGFPKGKQGEKGEPGPQGFPGDQGLP
GIPGFGGVGEKGEKGVPGLPGGRGLLGLDGSEGIPGKKGHPGVPGYPGLDGVEGMKGELG
DIGPPGPPVIIDREGVVISGAPGDPGNVGIPGPPGDEGIIGLPGLPGAPGFPGLERDGMG
PGGSPGIPGVKGEVGEPGRATVGIPGPPGRGGLPGLPGAPGLPGSPSPSFSPVIILSGRT
GAPGEPGQRGLPGALGPKGYKGEAGDCSCDGGVTRAGLKGISGPPGPSGSPGVPGAKGVC
GDPGSVGAPGLRGRPASTGQQGLPGLKGEKGDPSYATVKGARGDRGATAPRGPSGIPGTP
GRDGLPGVPGPPGPPGDGGLGFPGEKGLPGLPGSKGQRGEIGSPGIGYPGPSGVRGPPGV
TGMDGFPGQPGLPGPPGITLPCIVPGAYGPPGTPGFPGLPGPKGSKGFSGIPGQPGLHGS
KGQPGSPGIIGLLGEPGFPGPRGEQGPQGLPGLDGTDGLPGKMGASGLAGIKGALGDVFG
AESGPLGERGQPGLPGDKGLTGDIGFPGPKGLDGRPGLLGVKGEQGRAGYSGVPGLRGPP
GPGGPFGIKGKPGPLGSAGLAGAPGLPGVKGVTGDVGPQGPAGMKGFPGLDGAPGSAGER
GFLGPPGPFGQDGHPGFSGPKGEKGSSGLLGFPGMPGLPGVPGVNGIKGAPGTAGGKGSP
GVVGLQGQKGDRGDIGPPGLPVLWTSEQALQIKGDKGDPGLAGLGGFPGPRGDKGIPGSR
GQPGVPGPAGSSSKERGLHGDPGFPGPPGQPGLPGQKGAHGIMGFPGMPGERGSDGTTGA
LGFPGPIGLPGPKGEQGESVGVSGIPGPKGERGDPGFPGERGREGLKGEPGYPGNTGVNG
PKGSPGDLGQEGPAGIPGNAGLRGAPGPPGPPGQPGSVGFPGAHGTAGPKGFHGFPGLNG
LNGLQGTKGSPGTPGLSEAGLKGPAGLPGVKGEEGSPGLGRGAAGFPGPKGSSGDRGPPG
PMGLPGLPGTPGVSLPSDIRGRPGDTGIPGTDGSSGFPGPPGPRGPPGPASDQGDTGTPG
FPGVLGLRGIKGDVGPTGPIGLPGASGFKGARGEPGLMGMPGKDGPPGDPGYAGPKGETG
HRGLPGRPGAPGITPQPEEMTAPAGLPGLPGIDGIPGFDGDPGFHGPAGKPGPKGLPGRS
GLKGRDGLPGTPGIAGDPGLSGVPGPQGFEGVAGKPGSLGLPGMPGRSVGVGYTLVKHSQ
SDQIPPCPIGMNKLWDGYSLLYVEGQEKSHNQDLGFAGSCLPRFSTMPFIYCSINEVCYY
ASRNDKSYWLSTTAPIPMMPVDSVQIPQYISRCSVCEAPSQAVAVHSQDITIPQCPLGWR
SLWIGYSFLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYFANKYSFWLT
TVEQEQQFVSAPLSETLKAGQLRTRVSRCQVCMKNL
NT seq
4791 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccaggatttcaggggatcaacgggatcccaggtcaccctgggcagtctgga
cctagaggccttcctggcctggatggctgcaatggtaccactgggagccgtggcatttct
ggaccagatgggtttcctggcctacctggattgcctggtcgtcctggcccaaaaggcctt
aaaggagaacctgtttttgctcaaggcagtcttaaaggaatgaagggtgaaaatggtctt
cctggattggatggagttcctggcccaaaaggttttccaggtccaataggtcctacaggc
cctataggattaccaggtttgcagggtccagtgggtccccctgggccaccaggtccaaaa
ggtaacatgggattaggctttcaaggagagaaaggagaaaagggtgatgtagggctgcct
gggcctccaggtcccccaccatccactggaatactggaattcatgggatttccaaagggg
aagcaaggagaaaagggtgaaccaggtcctcaaggattccctggagaccaaggattgccc
ggcatcccgggctttggaggtgttggagaaaaaggagaaaaaggtgtgcctggcttacca
ggtggaaggggccttttgggactggatggatctgaaggaattccaggaaaaaagggccat
ccgggtgttccaggctatccaggactggatggagttgaaggcatgaagggtgaattaggt
gacattggtcccccaggtccgcctgtcattattgacagggaaggtgtagtcatttcaggt
gccccaggtgaccctggaaacgtgggaatacctggtcctccaggagacgaagggatcatt
ggtttacctggccttccaggggctccagggtttccaggcctggagagagatggaatggga
cctggagggtctccaggtattccaggagtcaagggtgaagtgggagaaccaggaagagca
acagttggaataccaggccctcccggcagaggtggtttaccaggtctgccaggagcacca
ggattgcctggttcaccatccccttcattctccccagtgataatcctgagtggaaggact
ggggccccgggggagcctgggcaaagagggcttccaggagctttgggtccaaagggctac
aaaggggaggcaggtgattgttcttgtgatggaggagttacaagagctggtctaaaaggc
atctcaggtccaccaggtccatcgggaagccctggtgtacctggtgccaagggcgtttgt
ggagacccaggctctgtgggagcaccaggtctgcgaggccggccggcttcaactggtcag
caaggacttccaggtcttaagggagaaaagggggatccatcctatgcaacagtcaaaggt
gctcgtggggatcgcggtgcgacagcacccagaggaccttcaggtatcccaggaactcca
ggcagggatggacttccaggcgtgccaggcccaccaggccctccaggtgatggtggactg
ggtttcccaggtgaaaaaggtctgccaggattacctggctccaagggccaacgtggagaa
attggttctcctggcattggatacccaggtcctagtggagttcgtggaccaccaggtgtc
actggaatggatgggtttccaggacaaccaggtcttccaggccctcccggtatcaccttg
ccctgcatagttcctggagcgtatgggcccccagggactcctggctttccaggactgcca
ggtcccaaaggcagcaaaggcttttctggcattccaggccaacctgggttacatgggtct
aaaggacagccagggtctccaggaatcataggcttgctaggggaacctggcttccctgga
cctcgaggagagcaaggcccacagggacttccaggactggatggaacagatggtttgcct
gggaaaatgggtgcttcaggcttagctggaataaaaggagctcttggagatgtatttggt
gctgagagtggacccctgggagagcgtggccaacctggacttccaggtgataaagggctt
acaggtgatattggatttccaggaccaaaagggctggatggaagaccaggcctcctgggt
gttaaaggtgaacagggtcgtgcaggatattcaggtgtccctggattgcggggacctcct
ggccctggaggtccttttggcattaagggaaaaccaggacccttggggtcagctggcctt
gcaggagcaccaggacttcctggagtcaaaggtgtgactggggatgtaggaccacaaggc
cctgctggtatgaaaggcttcccaggtcttgatggtgctccaggatctgctggggaaaga
ggattcttagggccacctgggccttttggtcaggatggacatccaggtttctctggacca
aaaggcgagaaagggtcttctggcctgcttggtttccctggcatgccaggactgcctggt
gtccctggagtgaatgggattaaaggagctcctggcacagctggaggaaaaggaagtcca
ggagttgtgggacttcaaggtcaaaaaggtgacagaggtgatataggtccaccaggtctt
cctgttctatggacttcagaacaggcactgcaaatcaaaggagacaaaggagatcctgga
ttagctggactcggaggattcccaggacctagaggtgataaaggaatcccaggaagccgt
ggacagcctggtgtccctggtccagctgggtcatcaagcaaagagagaggtcttcatggt
gacccagggttccctggtccacctgggcaacctggtctgccaggacagaagggtgcacac
ggcatcatgggatttccaggaatgccaggagagaggggttcagatggcaccacaggagca
cttggatttccaggacctattggccttcctggtccaaagggtgaacagggagagtctgtt
ggtgtttctggcattcctgggccaaaaggggagagaggagacccggggtttccaggagag
agagggagagaaggactcaagggtgaaccaggctacccaggaaacactggggtgaatgga
cccaaaggcagcccaggagatcttggccaagaaggaccagcaggaatccctggaaatgct
gggctgagaggagcccctggcccaccaggacccccaggacagccaggatctgttggattc
cctggagctcatggaacagcaggacctaaagggtttcatggatttccaggtttaaatggc
ctgaatggcttgcaaggcacaaaagggtctcctggaacaccaggtctgagtgaagctgga
ctgaaaggtcctgcaggtctcccaggtgtgaagggtgaagaaggctctccaggcttggga
agaggagctgcaggattccctggaccaaaaggctcatctggagacaggggtccccctggt
cctatgggactgcctggcctgccaggaacacctggagtttctcttccatctgatatacgt
gggagacctggagatactggcattccaggcactgatgggagttcaggttttccaggtcct
ccaggaccacgagggccccctggcccagcttctgatcaaggtgacacaggcactccaggt
ttccccggcgttcttggcttgagaggcattaagggtgacgtgggacccactggtccaatt
ggactccctggagcatctggattcaaaggtgcaagaggtgagcctggcctgatgggcatg
ccaggtaaagatgggcctccaggggatcctggttatgctgggccgaaaggtgaaacgggc
catcgaggtcttcctggcagaccaggggctccaggaatcaccccacagccagaagaaatg
acagcccctgcaggattgcctggtctgccaggaattgatggtattcctggctttgatgga
gatcctggattccatggcccagctggaaaaccaggcccaaaaggtttgccaggaagatct
ggtttgaaaggacgtgatggcttacctggaactcctggcatagctggggatccaggactt
tcaggtgtcccaggaccacagggatttgaaggtgttgctgggaagccaggttcccttggc
ttgccgggaatgcctggtcggagcgtgggtgttggatacactctggtgaagcacagtcag
tcagaccagatccccccgtgtcccatagggatgaataagctctgggatggctacagctta
ttgtatgtggaggggcaggagaagtcacacaaccaggatctcggttttgctggctcatgt
ttgcctcgcttcagcaccatgccttttatttactgcagcatcaatgaagtgtgctactat
gccagccgaaacgacaagtcctactggctctccaccactgctcccatccccatgatgcct
gtggacagtgtccagatcccacagtacatcagtcggtgctctgtgtgtgaagcaccttcc
caggcagtggctgtgcacagccaggacatcaccatcccacagtgtcccctgggctggcgc
agcctgtggataggatactccttccttatgcacactgctgcaggggcggaaggtggaggc
cagtcccttgtctcacctggttcctgcctggaggatttccgagccactccattcattgag
tgcaatggtgctcggggaacgtgccattactttgccaacaagtacagcttctggctgacc
acggtggagcaggagcagcagtttgtcagtgctcctctctcagagactctgaaagcgggg
cagcttcggactcgcgtcagccgctgccaggtgtgcatgaagaacttgtag
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