Cinclus cinclus (white-throated dipper): 134050103
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Entry
134050103 CDS
T10813
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1-like isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
134050103
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccic03019
]
134050103
Messenger RNA biogenesis [BR:
ccic03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
134050103
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
TSX
Motif
Other DBs
NCBI-GeneID:
134050103
NCBI-ProteinID:
XP_062358939
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All DBs
Position
15:1809055..1837661
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AA seq
564 aa
AA seq
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MFPDGAAEGASGAASPGCELQHSPRNRTATRDDTTGKQEDGPISGHTESAHPLQDAPQES
RPVNSEDREMSQHALPSGEDDEDDSDSDSDDDDVKVTIGNIKTGAPSYMGTPMNLNLKTG
RGYGASASAKLQPKGIDLDAAGNINGLPVIEVDLDSFEDKPWRKPGADLSDYFNYGFNEE
TWKAYCEKQRRLQLGLDPAPPISTENKITVQQGRTGNAEKEVENNIIKTEFKTDFLALVG
GRMKAGPPPNRKLGGTIDVIGGQAGTIRRVEGRRRDKHASEENPIQVLGDHGSKPQPPQQ
PQQPSQPQQPPQQQPFAPPAGPPPPPLAGPPPPHFLHPPPPVTSVPPPLHPPGLPPPGPI
PGLFPPPLAPPPALLIPTLDGQPASYNNRQPPPFGYNSADSGFISYPPISTSHTPWVTTV
DKGTSSSSSSHWEYSGSRRERERERDRERDRERDRDRDRTPTTSEYNNEDERYRYYSRER
SYDFERDYRRSRDRSREREERHRERRHRDKDDSSKHKSSRRKQHESEEGESHRRHKHKKN
KRSKEEKEASEDGAQEGEEQDTKE
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgttcccagatggagctgcagaaggagcctcaggcgctgcatctccaggctgtgaactc
caacattcaccgaggaaccgcacagccacacgtgatgacaccactggtaagcaagaagat
ggaccaatttctgggcacacagaatctgctcaccctctgcaggacgccccccaggagagc
cggcccgtcaacagcgaggacagagagatgtcccagcatgcccttcccagtggtgaggat
gatgaggatgacagtgacagtgacagcgatgacgacgacgtgaaggtcacgattggcaac
atcaagacaggagcaccatcctacatgggaactcctatgaatctaaacttaaaaacgggt
agaggctatggagcatcagcttcagccaagctgcagcccaaaggtattgacttggatgct
gcagggaatataaatggattgcctgtgatagaagtggatttggattcatttgaagacaaa
ccgtggaggaagccaggtgctgatctttctgattactttaattatggattcaatgaagaa
acatggaaagcttattgtgaaaagcagcggcggcttcagctgggactggaccctgctcct
cccatcagcactgagaacaagatcacggttcagcagggaagaacgggcaatgctgaaaaa
gaagtggaaaacaacatcatcaaaacagagttcaagacagacttcttggctctggtggga
ggacgaatgaaggctgggcctcctcccaacaggaagctgggtgggaccattgatgtgatc
gggggccaggcaggcacgatccgcagggtggaagggagacgtcgggacaaacacgcctca
gaggaaaaccccattcaggtcctgggagaccatggcagtaagccccagccccctcagcag
ccccagcagccctcccagccccagcagcctcctcagcagcagcccttcgctccaccagca
gggcctccgcctcccccgctcgccgggcctcctcctcctcacttcctgcaccctcctcct
ccagtgacttctgttcctcctcccctgcatcctccaggcctgccacctccaggtccaatt
ccagggttgttcccacctcctctggcaccaccaccagctctcctcatcccaaccttggat
gggcagccagccagctacaacaacaggcagccacctccctttggctacaactctgcagat
tcaggtttcatcagctacccccctatctccacgtcccacacaccctgggtgaccacggtg
gacaagggcacgagcagctccagcagcagccactgggagtactcgggctccaggcgggag
cgcgagcgggagcgggacagggagcgagacagggagcgagaccgggaccgcgaccgcacc
ccgaccaccagtgaatacaacaatgaggacgagcggtatcgctactacagccgcgagcgc
agctacgacttcgagcgcgattatcggcgcagccgcgaccgcagccgcgagcgcgaggag
cggcaccgcgagcgccgccaccgcgacaaggacgacagcagcaaacacaaatcctcccgc
aggaagcagcacgagagcgaggagggggagagccaccggcgccacaagcacaaaaagaac
aagcggagcaaggaggagaaggaggcgagcgaggacggcgcccaggagggcgaggagcag
gacaccaaggagtga
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