Cinclus cinclus (white-throated dipper): 134050314
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Entry
134050314 CDS
T10813
Symbol
USP42
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 42
KO
K11855
ubiquitin carboxyl-terminal hydrolase 36/42 [EC:
3.4.19.12
]
Organism
ccic Cinclus cinclus (white-throated dipper)
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ccic01002
]
134050314 (USP42)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ccic04121
]
134050314 (USP42)
Enzymes [BR:
ccic01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
134050314 (USP42)
Peptidases and inhibitors [BR:
ccic01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
134050314 (USP42)
Ubiquitin system [BR:
ccic04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
134050314 (USP42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UCH_1
Motif
Other DBs
NCBI-GeneID:
134050314
NCBI-ProteinID:
XP_062359284
LinkDB
All DBs
Position
16:7006203..7020135
Genome browser
AA seq
1329 aa
AA seq
DB search
MTIVNKPKSSKSKKSSSRRSEKSMKPRTKKMTSRTASLGRVPPTEDPNKVSVDKGPGGHI
YCRSSQKSKPFAQRDLVVNDGIAPPQRILFPPEKICMDWQQTQSVGVGLQNLGNTCFLNS
TLQCLTYTPPLANYMLSLEHTKSCHVEGFCMMCTMESHINQVLCCSNNAIKPTSVINGLK
RIGKHFHFGSQEDAHEFLCFTVDALQKACLNGSTKLDRSSQATTLIYQIFGGYLRSRVKC
LNCKAVSDTYEPFLDVTLDIKAVTSVTRALEQFVKPEQLDGENSYKCSKCKKMVPASKRY
TIHRSSNVLTISLKRFANFTGGKINKDVKYPEYLDLRAYMSQSIGEPLIYALYAVLVHSG
FNCNAGHYLCFIKAGNGLWYRMNDASVELSDIKTVLNQQAYVLFYIRRYDLTLGERAFYL
PAPSYPRSFLGQRGANSKQAAFMGPRLPPHMMKSSSRLNGNAPLKEDPSTVGVAVKRPSS
APPTACVQNWAISRPSMTDPSKPQKITISIHNKLPARQALPHECPSSAVEEEDLKPLPSA
TVTNSSTAEPTSNLSTVSVATNVSKQEVPDEIFVEPAVNGNPKLCSDSVVPYGAEPSGKS
EESKGLFKRNCNVISSNGILIGKVVRTLHNSHSSCQNVEERSQHELPKLDSLNGAISLDN
EYKENGLKLDDSTCQVQPIKPSEIFFSKANGVLETMPKALSPDPQGILESLTYSQLNSLS
EEKSVSGPQKSDNDGVMETVVMEALFAYEESRKVPSNFSCEVEKLFTQSDSETIFTKEEV
AESIITKADNAHLNINGQHKVRKKSLDTESEFLGQCESEDIRDKDKLRRSKEPELISKEN
PLYIKGSPESKEKLGQTSSIKPDIECSSKKLASLDITDKCQDTKDISNNYVEVPPVNDSS
ITKLDKVLESQFSRADEGLSNKICEDDDKHIKKNKKKIHDSKRTDKEHYRRKRENSDTEE
KERQTRNKSDDHSHRRRSSHSVETNKQSRHKQEYCSESKYRSSHNERNSPSNGRSSGKYS
RYRSRSRERTDPDRNRYYYSKGDRPWIRERYYQDEPRRWEKCRYYNDYYSSHGTRDGRER
KSSHCDKDYDKLSQAYSRSHKDYHCKSRWAHSTLSREEDVHHFSSHRANFHHCSVPQQHL
EKYSRERHGLPQVSAHSNYEDSSRENEKLRNGKRKYSHQEESESDIEKKCRKTDDQRIKK
YKKVKKKKKSKDKHREKDYKLYDLDCSVLHFDNDNRKHKKKKKKKQHDRKLKDLLEYLDP
HFQKKTWEKEESRPPDDHLCEQYRNQGSKQPYKEEKPSGAGDSKKYSSMASTEYVRGEEL
TEESLQYSD
NT seq
3990 nt
NT seq
+upstream
nt +downstream
nt
atgaccatagttaacaagccaaaatcttcaaagtctaaaaaatcttcctcaagacggtct
gagaaatctatgaaaccccgtactaaaaaaatgacatcacgcactgcaagtttgggccgg
gtacctcctacagaagatccaaacaaagtctctgtggacaaaggtcctggggggcatatt
tattgtagatcatctcaaaaatcaaagccttttgcccaaagagatctagttgttaatgat
gggattgctccgccacaaagaattctttttccgcctgagaaaatctgtatggattggcaa
caaacacaaagtgttggagttgggctgcagaacctcggcaacacatgtttccttaattct
actctccagtgtttgacctacacgcctcctcttgccaattacatgctttcacttgagcac
accaagtcatgtcatgtggagggattctgtatgatgtgcacaatggaaagtcacatcaac
caggtcctgtgttgctctaataatgccatcaaacctacatctgttatcaatggccttaaa
agaataggaaaacatttccattttggcagtcaagaggatgcacatgaattcttatgcttc
actgttgatgctctacagaaagcttgcttgaatggaagcaccaaattagacagatcttct
caagccaccacacttatttatcagatatttggaggatatctaagatctcgagtaaagtgc
ttgaactgcaaagcagtgtcggatacctacgagccatttctcgacgttactttggatata
aaggcagttacatctgtcaccagagctctagaacaatttgtgaaaccggaacagctggac
ggtgaaaacagctataagtgtagcaagtgtaaaaagatggttccagcgtcaaagagatac
acgatacatcgctcttccaatgttctcacaatatcactgaaaagatttgcaaattttaca
ggtggaaagatcaacaaggatgtaaaataccctgaatatttggatcttcgagcatatatg
tcccaatctattggagaacccctcatctatgctttatatgcagttcttgtacatagtggc
ttcaactgtaatgctggacactatctctgcttcattaaggctggtaatggactttggtac
cgaatgaatgatgcctcagtagagctttctgatatcaaaacagttctcaatcagcaagct
tatgtacttttttatatcaggcgttacgatctgacgctgggggagagagccttttacctg
cctgcgccctcctacccccgctccttcctcggccagcgcggggccaacagcaagcaggct
gccttcatgggaccacggcttcctcctcacatgatgaagagttcaagccgtttaaatggg
aatgcacccttaaaagaggatcccagtactgttggtgttgccgtaaaaaggccatcttca
gctccacctacagcttgtgttcaaaactgggccatttccaggccttcaatgacagaccct
tccaagccccagaagatcaccatcagtattcacaacaagctgcccgcacggcaggcactg
ccgcacgagtgtccgagcagcgctgtggaggaggaggatctgaagccccttccttcagcc
acagttacaaactcttccacagcagagcctacctcaaacctctccacggtgtcagttgct
actaatgtctccaagcaggaggttcctgatgaaatctttgttgagccagcagtgaatgga
aaccctaagctctgttctgatagcgtggtcccttacggtgcagaaccttcaggaaaatcc
gaggagtcaaagggcttgttcaaaaggaattgcaacgtcatatcttccaatggaattctg
attgggaaggtggtccgtacattgcataattcccattcatcctgtcagaatgttgaagaa
agatcccagcatgagctgccaaaacttgattccttaaatggtgctattagtttagataat
gaatataaagaaaatggactgaaacttgatgattccacttgccaagtccaacccattaaa
ccttctgagattttcttctctaaagcaaatggagtgcttgaaacgatgcctaaagctttg
tcaccagatcctcaaggtatcttagaatctcttacatacagccagttgaacagcttgtca
gaggaaaaaagtgtctctggacctcagaaatctgacaatgatggagttatggaaactgta
gtgatggaagcactgtttgcctacgaagaatccaggaaggttccatccaactttagctgt
gaggttgagaaactttttactcaatcagattctgaaaccatttttaccaaagaagaagtt
gctgaaagtattataacaaaagctgataatgcacatctcaatatcaatggtcagcacaag
gttaggaaaaaatctttggatactgaaagtgaattccttgggcagtgtgagtctgaagac
atcagagataaagacaaactaagaagatcaaaagaacctgaactcatttcaaaagaaaat
cctttgtacatcaaagggtctcctgagagcaaagagaaattagggcaaacttcctctata
aagcctgacattgaatgtagttctaaaaaactggcatctctagatattacagataaatgc
caagatacaaaggacatttctaacaactatgtagaggtaccacccgttaacgactcttct
attacaaagctggataaagtattggaaagtcaattttctagagcagatgagggactgagt
aataaaatatgtgaagatgatgataaacatattaaaaaaaataagaaaaaaatccacgac
tctaaaagaactgacaaagagcactaccggaggaagagagaaaattcggacactgaggag
aaggagaggcaaaccagaaacaaatcagacgatcattcccacaggaggaggagctctcac
agcgtggaaacaaacaagcaaagccgtcataagcaggaatactgcagtgagagcaagtac
agatcctcccacaacgaaagaaacagccccagtaatggcaggagctcaggaaaatattct
cgttacagatcccggagcagagaaaggacagatccagacaggaataggtattattattcc
aaaggagacagaccttggattagagaaagatactatcaagatgaaccacggagatgggaa
aagtgcagatactacaatgattattattcctcccatggaacaagggatggtagggagagg
aagtcctctcattgtgataaagactatgacaaattgagccaagcttacagcaggtcacac
aaggattatcattgcaaaagcagatgggctcacagcacactctcccgagaggaggatgtg
catcacttcagcagtcacagagcaaacttccaccattgttcagtacctcagcagcacttg
gaaaaatactcccgtgaaaggcatggacttccacaggtgtcagctcactcaaattatgag
gactcttcccgggaaaatgaaaaactaagaaatggcaaaagaaaatactcccaccaagaa
gaaagtgaaagtgacatagaaaagaaatgccgaaagacagatgaccaaagaatcaaaaag
tataagaaggtcaagaagaaaaagaagtccaaagataaacatcgagagaaggattacaaa
ctttatgatttggattgctctgtgctccactttgacaatgacaatcgcaaacataagaaa
aagaagaagaagaagcagcacgacaggaaactgaaggatttattggaatatttagatcct
catttccagaagaaaacatgggagaaggaagagtcccgtcctccagatgaccatttatgt
gagcaatacagaaaccagggcagtaaacaaccctacaaggaagagaagccttctggtgca
ggtgacagcaagaaatacagctccatggcatccactgagtatgtcagaggtgaggagctg
actgaagaaagccttcaatactcagactga
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