Cinclus cinclus (white-throated dipper): 134050330
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Entry
134050330 CDS
T10813
Symbol
PMS2
Name
(RefSeq) mismatch repair endonuclease PMS2
KO
K10858
DNA mismatch repair protein PMS2
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic03430
Mismatch repair
ccic03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
134050330 (PMS2)
03460 Fanconi anemia pathway
134050330 (PMS2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccic03400
]
134050330 (PMS2)
DNA repair and recombination proteins [BR:
ccic03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
134050330 (PMS2)
BRITE hierarchy
SSDB
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Paralog
Gene cluster
GFIT
Motif
Pfam:
MutL_C
DNA_mis_repair
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
134050330
NCBI-ProteinID:
XP_062359314
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Position
16:complement(6973637..6985149)
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AA seq
871 aa
AA seq
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MEEAAPCPQPAGAIRPIDRGSVHRICSGQVVLNLGTAVKELVENSLDAGATNIDIKLKDH
GAELIEVSDNGGGVEEENFEGLTLKHYTSKIQDFSDLIRVETFGFRGEALSSLCALSDVT
IFTCHKSAKVGTRLVFDHNGKITQKTPFPRQQGTTVSIQQLFYTLPVRHKEFQRNIKKEY
GKMVQLLQAYCIVSKGVRINCTNQVGQGKKSCVISTAGSPSLKENIGAVFGQKQLQSLIP
FVQLPPSEAVCEEYGLKPADLPQNLYSISGFISRCDHGVGRSTTDRQFFFINQRPCDPAK
VVKIVNEVYHLHNKHQYPFVVLNIGVDSGCVDINVTPDKRQILLQEEKFLLAILKTSLME
MFGSDVNKLNVNQKLLDIAGNLKKTLPEETEEPQAEMLFDSKTENPGSEGKRIMTLARLR
ESFSLHQATESNFKSSKKVKQQHHSPRQRLLDTTGSTVKIQKAVLPKEAESYPKFDSKVS
IPRRHLRKLEDTADSGSFSISESDAGCSTLETVSCINSESAINSEEEFCSTEEQMQKESL
KTAGCSKKSLDSDVQVLGTEPKLDQVNDWTDQNKFSQEANSCCPRVKRFKIRNFKSEADD
SKACKYPEVENTSVDVLVEVKKKIVPLEFSMKVLAEKVKKVIQQQQKNTDTENYRRFKAK
ISPGENKVAEDELRKEISKEMFAKMEIIGQFNLGFIIVKLNSDLFIIDQHATDEKYNFEM
LQQHTVLQAQKLIVPQNLNLTAVNETVLIENLEIFRKNGFDFVINENAPVTQRVKLVSLP
TSKNWTFGPQDIDELIFMLSDYPGVMCRPSRVRQMFASQACRKSVMIGTALNVQEMRKLI
NHMGEIEHPWNCPHGRPTMRHIVSLDLISPE
NT seq
2616 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggctgcgccctgcccgcagcccgccggggccatccggcccatcgaccgcggg
tctgtccatcgcatctgctcggggcaggtcgtgctgaacctcggcactgccgtcaaggag
ctggtggaaaacagcctggatgccggagctaccaacatcgatataaaacttaaagatcat
ggggcagaactgatagaagtttcagataatggaggtggagtggaagaggaaaactttgaa
ggcttgactctgaaacattacacatcaaagatacaagatttttctgatctaatacgtgtt
gaaacatttgggtttcgaggtgaagctttgagttcactgtgtgcattaagtgatgttacc
attttcacttgtcataagtcagcaaaggttgggactcgtttggtgtttgatcacaatggc
aaaattactcagaagactcctttcccacgacaacaaggaacaactgtcagcatccagcag
ctgttttataccttaccagtgaggcataaagagttccaaaggaatatcaaaaaggaatat
ggaaaaatggtccagctgttacaggcctactgtattgtttcaaaaggagtgaggattaac
tgcactaatcaagttggtcaagggaaaaaaagctgtgtgatatccactgctggaagtccc
agtttaaaggagaacattggagcagtatttggacaaaaacagttgcagagccttattcct
tttgttcagcttcctcctagtgaagctgtttgtgaagaatatggactcaaacctgctgac
ctgccacaaaatctttatagtattagtggcttcatttctcgttgtgatcacggtgttgga
aggagtacgacagacagacagttcttctttatcaaccaacgtccctgtgatccagcaaag
gttgtcaagattgtgaatgaagtttatcacttacacaataaacaccagtatccatttgtt
gtccttaacattggggtagattctggatgtgttgatatcaatgtaactcctgacaaaagg
caaattttacttcaggaggagaagtttttattagcaattctaaagacttctctgatggag
atgtttggtagtgacgttaacaaactgaatgtcaatcagaaacttctggacattgcaggt
aacttgaagaagacacttcctgaagagacagaagagcctcaggcagaaatgctgtttgac
tctaagactgaaaatccaggtagtgaaggcaaaagaataatgactcttgccagattaagg
gagtcattctctctccatcaagcaacagaaagtaattttaaaagctctaaaaaggtaaaa
cagcagcaccattcccctagacaaaggttactcgataccactgggagtactgtaaagatt
caaaaggctgtcttgcctaaggaggctgagagttatcctaagtttgactcaaaggtgtca
attccaaggagacacttgagaaaattagaagatactgcagattctggatcctttagcatt
tctgagtcagatgctggatgtagtacactggaaactgtaagctgcatcaatagtgaaagt
gcaattaattctgaagaagaattctgtagcacagaagaacagatgcagaaggaaagtctt
aaaactgctggatgtagtaagaagtcattggacagtgatgttcaggtcttgggcactgaa
cccaagctagatcaagtgaatgactggactgatcaaaacaagttctctcaagaagccaat
agctgttgcccaagagtaaaacgttttaaaatcagaaactttaaaagtgaagcagatgat
tccaaggcatgtaaatatcctgaagtggagaacactagtgttgatgtactggtggaagtt
aaaaagaaaattgtgcctcttgaattctctatgaaggttttggcagaaaaggtaaaaaag
gtaatacagcaacaacagaaaaatacagacactgaaaattacagaagatttaaagcaaaa
attagtcctggggagaataaagtagcagaagatgaattaagaaaagagatcagcaaagaa
atgttcgcaaaaatggaaatcattggccagttcaatttagggtttataatagtaaagttg
aattctgatctattcataattgaccaacatgctactgatgagaaatacaactttgagatg
ttgcaacaacacactgttctccaagctcagaagctgatagtgcctcaaaatctcaattta
acagcagtaaatgaaactgtattgattgaaaacctggaaatattcagaaaaaatggcttt
gattttgtcataaatgaaaatgctcctgtaactcaaagagttaaattggtatcgttgcca
acaagcaaaaactggacttttggtccacaagacatagatgagctgatcttcatgttgagt
gactaccctggagtgatgtgcaggccctcgagggtcagacaaatgtttgcttcccaagct
tgcaggaagtctgtgatgattggaactgcactgaatgtgcaggaaatgagaaaactgatc
aatcatatgggtgagattgagcatccctggaactgcccccatggaaggcctactatgaga
cacatagtcagtttagacctgatttcaccagaataa
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