Cinclus cinclus (white-throated dipper): 134050350
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Entry
134050350 CDS
T10813
Symbol
SLX4
Name
(RefSeq) structure-specific endonuclease subunit SLX4
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
134050350 (SLX4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ccic04121
]
134050350 (SLX4)
03400 DNA repair and recombination proteins [BR:
ccic03400
]
134050350 (SLX4)
Ubiquitin system [BR:
ccic04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
134050350 (SLX4)
DNA repair and recombination proteins [BR:
ccic03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
134050350 (SLX4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slx4
BTB
zf-C2H2_jaz
B129_C2H2-zf
Zn-C2H2_12
zf-met
Motif
Other DBs
NCBI-GeneID:
134050350
NCBI-ProteinID:
XP_062359343
LinkDB
All DBs
Position
16:12451102..12471793
Genome browser
AA seq
1855 aa
AA seq
DB search
MDEQDNDFKELWANILSRAKKNGDAEATKRVQNRPKSSTTRSKLRRGKAAARSQTHHHLA
GLKQTNLPQDLSPKKQTLLHKEDGDAAACSGETAQGDGARSPLPASQLSTGTTECSQRPL
TVNPPSGCSQTALPFLPAPPPGTCSSPTPKVRVAELVVERMQQFKRVAPEQLKHSSDGSV
PKAAASRDFPARSQEQNPPEDDTHHLPSVEHDTALALALQQESKEEALASLEDAGLFFCQ
ICQKDLTAMNTLRREQHVNRCLDEMEETQMSSCSKPVVPECPICGKQFQTPQSRVSHLKR
CAVEMDVPPKLLLQAVQLQVATLGDTALQCPSNQPSRAKRKGPSNEDSRKTQKRAKMEPK
DEDLQVAMAMSRSLLEQEKREQAKSITNAKAVAAFPIKWKPGSEKKRRRKGASAPPPLLL
QDPEKAHKRIQERVALMLTEEVEFPPTPQLPISRILEDEKATWLLPLSKAKKCCLWKISA
LTEPCDPESFYTAALTPPIVPWKPVQNKPENLQPSVGSHQPEVSQQTQPDLSSQEPTCTK
AGGQTSDEFKPGPEGDGQLLSPSQKDIQTLQDLVELAREGLTLTQWNLDTGHVQAAEQPG
EELTPSDPPCSGFVPPSKEKNLLRSSSNRSSLQLLAQDFGAMVNNPHLSDVQFQVDSGDV
LYAHLFVLYARCPAAAQAVHSEGLVVEEDGAAATQRVLLSDVSAEAVAAFLRYLYAADTN
FPAGLRPQLQALAARFGMRELMAECEKNTGESQVSSGVDSEDDLISVRGDEDCEDRAENF
QDLLKSVWVGEDEEEVAMLSPECQKEDDSEMGEQELEEIYEFAATQRKMAQGEREVSKGT
HCSICSDTEAVQGTNQQTEQEEVKRPESASVSNSFKGLRDGNHVERSKCDLYAQKEKMQN
VNKCKSMNDPQTTIVPHHSEPQKWDGTSHGANEGGTLGGCEEVKDSRSPQVSHDKADPCE
DQFPGFQGDTDINGSYERLFSASQGDHCEPSPVKVTKESGKSPSEKHIGLNDSLLFSKSQ
KDCSVWKNGFCGSPTAQPYVSLFPALGSSPASPKSEGKLAREHVSTPKQNRKEKLFPSYD
IHSQKAKELGAASRNKIRVFPAELPHSESNKNTRVPVLSSPGRTQDAAAQGIKEGDAIVL
SSDDDEMELQQGKKLPESDSALEKMEMPVHLKYTDMKQGPEIPKPDLNLPVPETEQRSAQ
ISCGSTDTVCVSGDVKVSPVFPLRRQTGACTEIRQSPNLSPGKRLSNETSPDTSWLVPGT
PVLTKSRSLSTQTQVTSIDSLKGSGSKLSTKNIAAGNSNHEMTGSLIKVHETTLSDKHLP
METSASGRSLPSSPAAESFSKNSLPVSPVDPVFLSPGHTSTESKCANISGLPTLVPPCQE
QPLEDKINVSVVELDDSDREVSLPSVGSSVLLCEEPPIPVDDCWLVDCLSPARGDGHSCG
QVSTASSPSPGSWQEQGESPVQVLGIKGSTPLQGTPAGRRTTLHCPEKSPIEPCSSVGSR
ASYLDSKIWDDWNGEEEEDQLPEILPLSQRLAAAAEAGRIDPVKTPEQKNNSSCQESNRS
PSTPVTPMPAYSMMETPQLKKELSRFGVRALPKRQMVWKLKEIFQYTHRDGDSDFEDEIP
YSQPLPRKSPAKWPRQPKAGGAAGRNRASAPRAVGKRKQLAKASVVLPRDEADGAAHGIG
CATAKDRTKVTHHPEGGKEQERPSVSLAADGEELPASQESAGSSVNGSDISFGSQSSFVN
GFETCAFTSEEEEEEFPASQAAAREEEKLEAVRCYIRSNTALYNRILFYEPIELADLHAE
LKQDGIKISKAKLLDFLDSQCITSTMARARKEQQQKRKESRKQRRRYRVKPPLTR
NT seq
5568 nt
NT seq
+upstream
nt +downstream
nt
atggatgaacaggacaatgattttaaagagttgtgggcaaatattttgagtagggcaaag
aaaaatggggatgctgaggcaacaaagagggttcagaacaggccaaagagcagcacaaca
cgaagcaaattaagaagaggcaaagctgctgctaggagccaaacgcatcatcacttagca
ggattgaagcagacaaacttgcctcaagatctgagtccaaagaagcaaacattgttgcac
aaagaagatggtgatgctgcagcctgtagtggtgagactgcacagggggatggagcaaga
agccctctccctgccagccagctgagcacaggaaccactgagtgtagccagaggcctctg
acagtaaatcctccgagtggctgttcccagactgccttacccttccttcctgctcctcct
ccaggaacctgctcctcacccaccccaaaggtgcgggtggcagagctggtggtggagaga
atgcaacagttcaagagggtggcacccgagcagctgaaacacagctcggatgggagcgtg
ccaaaggctgcagccagcagggatttccctgccaggagccaggagcagaaccctcccgag
gatgatacccaccatctcccatccgtggaacacgacactgctctggctttggctcttcag
caggaatccaaggaggaagccctggcaagcctggaggatgcaggcttgttcttctgtcag
atctgccagaaggatctcacagccatgaacaccctgcgacgagagcagcacgtcaacagg
tgtctggatgagatggaagaaacacagatgtcatcctgcagcaagccagtggtccctgaa
tgtcccatctgtgggaagcagttccaaaccccacagagccgagtcagtcacctgaaacgc
tgtgctgtggagatggatgtgcctcctaaactgcttcttcaggcagtgcagttgcaggtg
gccacacttggtgatacagctcttcaatgtcccagcaatcagcccagcagggcaaagcgg
aaaggcccctccaatgaggactcaaggaaaacacagaagagggccaaaatggagcctaag
gatgaagatttgcaggttgccatggcaatgtcacgctctctgttggagcaagaaaagcgg
gaacaagcaaaatcaattacaaatgcaaaagcagtggctgctttcccaatcaaatggaag
ccaggatcagagaaaaaaaggcgtaggaagggtgccagtgcccctccacctctgctgctc
caggacccagagaaggcccacaagaggatccaggagcgggtagctctgatgctgacagaa
gaggtggaattccctcccacccctcagctgcccattagcaggattctggaggatgaaaaa
gcaacctggctcctgccattgtccaaagccaagaaatgctgtttatggaagatcagtgct
ctgacagaaccctgtgaccctgaatcattctacactgcagccttaacccctccaattgta
ccctggaagcctgtgcagaataagccagagaaccttcagccatcagtgggatctcatcag
ccagaagtatcgcagcaaactcagcctgacctcagttctcaggaacctacctgcacaaag
gctggaggccaaacttctgatgaattcaagccaggccctgaaggagatgggcagctttta
tccccaagccagaaggacattcagaccctgcaggacctggtggagttggccagggaaggg
ctcacccttactcagtggaatcttgacactggccatgtacaggcagcagagcagccagga
gaagaactgactcccagtgatcctccatgtagtggctttgtgcccccatccaaggagaag
aacctcctcaggagcagcagtaacagatcctctctccagctgctggctcaagattttggt
gccatggtcaacaacccccacctgagtgatgtccagttccaggtggacagtggggacgtg
ctctacgcccacctgttcgtgttgtacgcgcggtgtccagcagcggctcaggctgtgcac
agcgaggggttggtggtggaggaggatggggctgcagcgacgcagcgggtgctgctgagt
gatgtgtcggccgaggctgtggctgccttcctgcggtacctctatgctgctgacaccaac
ttccctgctgggctgcggccccagctgcaggccctggctgccaggtttggtatgagggaa
ctaatggcagagtgtgaaaaaaacactggagagagccaggtgtcctctggagtggattca
gaagatgatcttatctctgtgaggggtgatgaagattgtgaggacagagctgagaacttc
caagacctcttgaagtcagtgtgggtgggtgaagatgaggaagaagtagctatgctgagc
cctgagtgccagaaggaggatgacagtgagatgggagaacaagagctggaggaaatctat
gagtttgctgcaactcagagaaagatggctcagggtgaaagagaggtaagcaagggaaca
cactgcagcatctgcagtgacactgaggcagttcaaggtacaaaccagcaaactgagcag
gaggaggtaaagagacctgaatctgcttcagtaagcaacagcttcaaaggtctgagggat
ggcaaccatgtggaaagatctaagtgtgacttgtatgcacaaaaagagaagatgcagaat
gtaaataagtgcaagagcatgaatgatccacagaccactattgtgcctcaccacagtgaa
cctcagaaatgggatggaacatcccatggtgctaatgaaggagggactcttgggggatgt
gaggaggtgaaggattccaggtcacctcaggtctcacatgacaaggcagatccctgtgaa
gatcagtttcctggtttccagggtgatactgatataaatggcagctatgaacgtttgttt
tctgcctctcagggagatcactgtgagccttccccagtgaaagttaccaaagaatcagga
aagtcccctagtgaaaagcatattggtcttaatgattcacttctgttcagcaagtcacaa
aaagactgctctgtgtggaagaatggattctgtgggagtccaactgcccagccttatgtg
tccctttttcctgctcttggctcttcacctgcatctccaaaatcagaaggaaaattagcc
agggaacacgtgtcaacaccaaagcaaaacagaaaggaaaaattatttccatcttatgac
atacactcccagaaagccaaggagctgggtgctgcatcaagaaacaagatcagagttttt
ccagcagagcttcctcacagtgaatcaaacaagaacacacgtgtcccagtgctatcatca
ccaggcaggactcaggatgctgcagctcaggggatcaaggagggtgatgctattgtttta
tcttctgatgatgatgaaatggagttacaacaaggcaagaagttgccagagtctgactct
gctctggagaaaatggaaatgcctgtgcacctgaagtatacagacatgaaacaaggtcct
gagataccaaaacctgaccttaacttaccagttcctgaaacagagcagagatcagcccag
atttcatgtggcagtacagacacagtgtgtgtaagtggtgatgtaaaggtgtcccctgta
tttcctcttaggagacaaacaggtgcttgtacagagatcagacagagtccaaacttgagc
cctgggaaaaggctcagtaatgaaacgtctccagacacctcctggcttgtgccaggaaca
ccagttctgaccaaaagcagaagcctctcaacacagactcaggtcacaagtattgattct
ttaaagggttcaggatctaaactcagcacaaagaacatagcagcaggtaatagtaatcat
gaaatgactggaagtttaataaaagttcatgaaacaacattgtcagacaaacatttgcca
atggagacctcggccagtggaaggagcttacccagcagcccagcagcagaatccttttcc
aagaactcccttccagtttctccagtagatccagttttcctctcccctggccacaccagc
acggaaagcaaatgtgccaatatctcaggtttacccacactggttcctccgtgccaggag
cagccactagaagataaaatcaacgtcagtgtggttgagctggatgacagtgacagggaa
gtaagtctgccttctgtgggtagcagtgtcctgctgtgtgaggagcccccaatccctgtt
gatgactgctggctcgttgactgtctgtcaccagccagaggtgacggccacagctgtggc
caggtcagcacagccagcagccccagccctggctcttggcaggagcagggggagagccca
gtccaggtgcttggaattaagggcagcacccctctccaaggaactcctgctggcaggaga
acaactttgcactgccctgagaagagccctattgagccctgttcatcagtgggcagcaga
gccagttacctggactccaaaatctgggatgactggaatggagaagaggaggaagaccag
cttccagagattcttcctctgtctcagaggttggcagctgcagcagaggccggtcggatc
gatcctgtcaagactcctgaacagaagaacaacagctcctgtcaggagagcaacagatcc
cccagcactccagtgacacccatgccagcttattccatgatggagaccccacagctgaag
aaggagctgagcagattcggtgtccgtgctctcccaaaacgccaaatggtgtggaagctg
aaggagatatttcagtacactcaccgggatggggactctgactttgaggatgaaatcccc
tattcccagcccctcccacggaagtccccggccaaatggccgaggcagccaaaggcaggc
ggggctgcgggcaggaaccgtgccagcgccccgcgggctgtgggcaagaggaagcagctt
gccaaggcttctgtagtgctccctagggatgaggctgatggtgcagcccatggaataggt
tgtgccacagccaaggacagaactaaagtgacacatcacccagaaggaggcaaagagcag
gaaaggccgtctgtgtccctggcagctgatggcgaggagctcccagcatcccaggagtca
gcaggttcttcagtgaatggaagtgacatctcctttggttcacagagttccttcgtgaat
ggatttgaaacctgtgcttttacatctgaggaggaggaagaggaatttccagcatctcaa
gcagcagctcgggaggaggaaaaactggaggcggtaaggtgctacatccgctcaaacaca
gccctgtacaacaggattctcttctacgagcccatcgaactggctgatctgcacgcagag
ctcaaacaggatggcattaaaatttccaaggcaaagctgctggactttctggattctcag
tgcatcacatctaccatggccagagcccggaaagagcagcaacagaagaggaaggagagc
agaaaacagagaagacgataccgagtgaaaccccctcttacccgctga
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integrated database retrieval system
