Cinclus cinclus (white-throated dipper): 134050364
Help
Entry
134050364 CDS
T10813
Symbol
PALB2
Name
(RefSeq) partner and localizer of BRCA2
KO
K10897
partner and localizer of BRCA2
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic03440
Homologous recombination
ccic03460
Fanconi anemia pathway
Brite
DNA repair and recombination proteins [BR:
ccic03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
134050364 (PALB2)
FA (Fanconi anemia) pathway
Downstream FA components
134050364 (PALB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
134050364
NCBI-ProteinID:
XP_062359363
LinkDB
All DBs
Position
16:590438..599286
Genome browser
AA seq
1330 aa
AA seq
DB search
MEAPPAAAALSGADKEKLREKLALLRREYSETVIRLRRARRAERARSHGRRERSPPCGSR
GEREAPGLQCSSPACSRDNASPSADRGGPSQLQTATCSEADTEKTTSVTVKHVPELSSDE
VSPQDSSQAESFQVSQENLCCGTISPVPVEKKSQTSRGMMKLRRRTKVLESKEREPVHDV
HLISAGEMMKNQIASAKELQSPLFRHSSLSHTEEPAQRAPGAVLVQEERNSFTPEAPSGL
VQDVFEGSVTAREPELSPHALRDSRDIWQPESSGAVTTPDRCEPCSQHGDSVLLDPRGDG
GEESPSIIKQPEGQSLCEDQGEVRGLLDLMSENEMLLDSKNNTISEESKNHEGHQSDTNT
LNPCPAANALDNAEELLENQQAEVQSRLSSPDKAVAPEGTLSSCTVVEGLLFPLEYYVRT
TRRMSNCQRKVDLDAVILSQLGRSKKGQRGKCKQKDANFNQPSQERAEGDLEPGVVPFPF
LGAENDQANSSSSQKALPASSNSSSSTSLETISQKSIPSTRQEQRQSQRTQKRRRKSACK
ASMHPASQVLMESEDSTMANGSSALLSNENQSEKENCDANLERSSSYERRLCGAEALGSA
GAGVTGATQPEGPDPAPGGSQVPGKCHKALVEWVQNPLQSSGSLSPESDTFASHVGDVEA
NAPVSQGDRHPVQHVKRQRGARGSGQLPGVRVPVRRSLRCSARHRAHTASPDGSSRGHSC
PMGSQGPAALGLPALDPDTRGSLFSFRSLQWLIPKLGIRDFHLPSEEFGVLKLEKLKSSP
MNDLEHFVSGDGVASEDTLDARMKPKDKGLRTGLPELPCMGSPVSKKELSTHELLFTPMG
TVLADAPAHPESQISSSVFPAVGATPGVLPSGHSEVTVSDTPSVPASAIPPSPRGAAALV
LGDVAHRDPAVPLHPDGCAAGAATNQEEQGTIFPSAAERGPENKSDETVSLEKHQQSENK
EQASCRASCEQKKDTAEQLTPVLPDGPREESLQFVSELKDPSCSCSVDVSTVWWAAAGHR
ELRVVTASESTVSLWEPLAPDCWGKVYTWHLTEIPVIQIVTLPDTCNLVCVALGELEIGE
IRLLLYSSETDSSEHSLVKTGNIKAVVGLKDRRLVSSSRTMQEQQVEVVSLSETGGSKDK
KTLMPPEETVTAFAEVEGMREALVGTTVGNSIVVWNLKTGQLLRKMHVGYSYPASICHRA
YSDSGLLFVVLSHPHAKESESCGSPAFRVVAFNPSTGRSAEVMFSCLPPGPAGRYLEGDV
WDTAGAAVLTSGAVAVWDLLRGRCTAVLPAGPAGHWALARWASGGAGLLAGRCNGTVHLY
RYQPPQPGAA
NT seq
3993 nt
NT seq
+upstream
nt +downstream
nt
atggaggccccgccggcagcggcggccctgagcggcgccgacaaggagaagctgcgggag
aagctggcgctgctgaggcgggagtacagcgagaccgtcatccggctgcggcgggcgcgg
cgagccgagagagccaggagccacggccggcgggagaggagccccccatgtgggagccgg
ggagaacgggaggccccaggtctgcagtgctccagtcctgcctgttccagagataacgcg
tctcccagtgctgacagaggtgggccctctcagttacagactgcaacctgctctgaggct
gacacggagaagacaacgtctgtcacagttaagcatgttccagaactctccagtgatgag
gttagcccgcaggacagttcccaggcagaaagctttcaggtcagccaggaaaacctgtgc
tgtgggaccatcagtcctgtccctgtggagaaaaagtcccaaacctcccgaggcatgatg
aagctgcggagacggacgaaggttctggaatcaaaggaaagggaaccagttcatgatgta
catctaatcagtgctggtgaaatgatgaaaaatcaaattgccagtgcaaaggagcttcag
tcaccactattcaggcacagcagcctctcacacactgaggaacctgctcaaagggcacct
ggagcagtgcttgtgcaggaagaaagaaatagtttcactcctgaggcaccatcagggctt
gtacaggatgtgtttgagggcagtgtgactgcacgagagcctgagctatccccacatgca
ctgagggacagcagggacatctggcagcctgagtcctcaggggctgtgaccacacctgac
agatgtgagccgtgttcacagcatggagactctgttttacttgaccccagaggtgatggt
ggagaagaatctcccagtataataaagcagccagaaggtcagagtttgtgtgaagatcag
ggtgaagtacgtgggctcctggatttaatgtcagaaaatgaaatgttgcttgacagcaaa
aataacaccataagtgaggagagcaaaaaccatgaaggacatcaaagtgacactaatacc
ttaaatccctgtcctgcagctaatgctctggacaatgctgaagagctgttggagaatcaa
caggctgaggttcagtcaaggctctcttctcctgacaaggcagtggcccccgagggcacg
ctgagctcttgcacagtggttgaagggctgctcttccccctcgagtactacgtccgcaca
actcgccgcatgtcgaactgccagaggaaggtggacctggatgctgtaatcctcagccag
ctgggcaggagcaagaaaggtcagcggggtaaatgcaagcagaaagatgcaaacttcaat
cagccctcgcaagagagagccgagggtgatttggagcctggggttgtgcccttccctttt
cttggggcagaaaatgatcaagcaaactcaagtagttctcagaaagctcttcctgcatct
agcaacagcagcagcagcacctctcttgaaaccatttctcagaaaagcatccctagcaca
aggcaagagcagagacaatcccagaggacacagaagagaagaagaaagtctgcctgcaaa
gcctccatgcatccagcatcacaagtgcttatggagagtgaggattccacaatggccaat
ggaagcagtgctctgctgtcaaatgagaaccagagtgaaaaggaaaactgtgatgctaac
cttgaaaggtcatcctcatatgagagaagattgtgtggtgctgaagcactggggtctgca
ggggcaggagtgactggagctacacagccagagggtcctgaccctgctccaggtggaagc
caagtgccaggcaaatgccataaggctctggtagagtgggttcaaaaccccctccagagc
agtggttctctgagcccagagagtgacacttttgccagccatgtgggagatgtggaagcc
aatgctcctgtgtctcagggagacagacatccagtgcagcatgtgaagaggcagcgagga
gcccgtgggtctgggcagctccccggggtcagggtccctgtgcgccgctccctgcgctgc
tctgcgagacacagggcccacacagcctcaccagatggcagcagcagaggacacagctgt
cccatgggttcacagggtcctgctgcccttgggctccctgctctggaccccgacactcgt
ggctccctcttctcctttcgcagcctccagtggctgatccctaagctgggcatcagggac
ttccacttaccaagtgaggaatttggagtactgaaactggagaaactgaaatcttcccct
atgaatgacttggagcattttgtgtctggggatggtgtggcttcagaagacacactagat
gcacgaatgaaaccaaaagataaaggtctcagaactggattgcctgaactcccttgcatg
ggaagcccagtgtccaaaaaggagctttccacccacgaattgctatttactcccatgggg
actgtcttagctgatgctcctgctcaccctgagtctcagatttcttcatctgttttccct
gctgtgggtgcaaccccaggtgttttaccttcagggcacagtgaggtcacagtgagtgac
acaccttctgtacctgcctcagccatcccaccttcccccagaggagcagctgccctggtc
ctgggggatgtggcacacagagaccctgctgtgccactgcaccccgacggctgtgctgca
ggggctgccacaaaccaggaggagcaaggtacaatatttccttcagcagctgaaagaggt
cctgagaataaatctgatgagactgtgtccttggagaagcatcagcagtcagagaacaaa
gagcaggcatcctgcagagcttcatgtgagcagaaaaaagatacagcagaacagttgact
ccagtgctgccagatggccccagggaagagagcttgcagtttgtgtcagagctaaaggat
ccctcgtgttcctgctctgtggatgtgagcacggtgtggtgggcagcagctggccacagg
gagctgagagtggtcactgcctccgagagcaccgtgtccctctgggagcccctggcaccc
gactgctggggcaaggtctacacctggcacctgacagagattcctgtaatccagattgtt
actctgccagacacctgtaaccttgtgtgtgtagcactgggagagctggagattggagaa
ataaggctcctgctttattcttctgagactgactcgtctgagcactccctagtgaaaact
gggaatataaaagcagttgttggactgaaggaccggaggctggtgagcagcagcaggacc
atgcaggagcagcaagtggaggtggtttcgctctcagagactggggggagcaaggacaag
aagacactgatgccacctgaagaaactgttacagcctttgctgaagtagaagggatgaga
gaggccttggtgggcaccactgtagggaacagcattgtggtttggaatctgaaaacaggt
cagctcctgaggaagatgcatgttggttattcctacccagcttccatctgccatcgagca
tattctgactccggccttttgtttgttgttttaagccatcctcatgccaaagagagcgag
tcctgtggaagcccagcattccgtgtggtggccttcaaccccagcacgggccggagtgca
gaggtgatgttctcctgcctcccccccggccctgcaggcaggtacctggagggtgacgtg
tgggacaccgccggagccgccgtgctgacgtcgggggctgtggccgtgtgggacctgctg
cggggccggtgcacggccgtgctgcccgcgggccctgcggggcactgggcactggcccgc
tgggccagcggtggggccgggctgctggccgggcgctgcaatgggaccgtgcacctgtac
aggtaccagcccccccagcccggagccgcctga
DBGET
integrated database retrieval system
