Cinclus cinclus (white-throated dipper): 134050547
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Entry
134050547 CDS
T10813
Symbol
CIITA
Name
(RefSeq) MHC class II transactivator
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic05164
Influenza A
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
134050547 (CIITA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
ccic01001
]
134050547 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ccic04054
]
134050547 (CIITA)
Enzymes [BR:
ccic01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
134050547 (CIITA)
Protein kinases [BR:
ccic01001
]
Serine/threonine kinases: Other
TAF1 family
134050547 (CIITA)
Pattern recognition receptors [BR:
ccic04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
134050547 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
NLRC4_HD2
LRR_8
LRR_9
LRR_14
NB-ARC
NPHP3_N
nSTAND3
AAA_19
RsgA_GTPase
AAA
RNA_helicase
AAA_22
Motif
Other DBs
NCBI-GeneID:
134050547
NCBI-ProteinID:
XP_062359671
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All DBs
Position
16:16106855..16125999
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AA seq
1124 aa
AA seq
DB search
MDSVFVPENGYLDLLHSDIDPLHLCTFFDPKSSGDEEGDFSTDLEVDASSYEQVNNVDFL
YENGDGFYPCSNTMDAYAKIAELVEYVLKDQQEKQVEDIFAGNLILDDIATENTEKFPDI
KMQTCLKRTFLGSAGESYCDASEPKYKKIIEDPAASAGNGSFFPMHLNSHPVSCTSLTNQ
HMSFPVPAAHGLEKSLLIPGLSEPLTSECLPISVKGYQENPGLAGPPQQIFNFVLENGTS
DVVVYPVLTSSMETFMSPSFPVNLCAQHTYATSPGIPDAAADKLAHLEKFQEVQDSIIPS
EEPFKRPEQVENFCSSLKDYFRDTCKSVTMEQEVNLDHLFIDGTLVQSQTETKTGKSSAK
AMEKELVTCSLQEKEKIAIDRSQIFQIPQRKDLETKVIVVLGKPGMGKSILIQKICQDWS
NKEFPQFEFVFWFDCRQISLPEKQYSLKELLLEFFVKPQEGSKEIFEYILQNPDKVLLIF
DGFKGLHDHENFHRCSARQPEKDLCSIKELLSGLIQKKILNGCTLLFTARPKDKLFQYMS
KVDKIIEIVGFSPQQRELYISKYFEESPYCDSALKLIKECEYLFSHCYSPVMCRFVCFLC
ETVLEMGEKSLPSTLTEVFLKFFQQKIMFMQTDVTITKNQESLATLARVAWCLGEKHQSA
MKSDLISSEEVKEFALKYGFFLPFAFPRHSDSEEEEFGTTFSDFVIQNFLCALHLLLAEE
LKDKNLTKYLSFLSKKKKPFNWLDLMPRFLTGLVFLQDDPCFWSLSNEDDKQSTKKQKTL
LKYIRRLQINTLCPERLLELLHCVYETQNNYLLQHVALRLEPELSFLGIVLTPPDVHVLR
SILKRSRKEFSLDLRKSSIDMQGLQVLVSLKNVTSFRASLSDTVGLWRSLEQTKDYELLK
ASTEKFVLEPFKAKTMKDISDLSNLVEMQEKMRNCVQEASGCTSYEIPAIRNLRKLEFAL
GPACGLQGLLKLVKILAAFPSLQHLDLDALSENGIGDEGAKSLSEVFPTLTSLETLNLSQ
NKITDLGAENLAAAFPSLSSLKTLSLYNNNICDFGAENLAKVLPAMTSLRVLDVQYNKIT
GVGAQQLTDSLRKCPHIKNLLLWNPTIPYGVLEHLQQLDSRISV
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atggattcagtatttgtgcctgaaaatggctaccttgatttactgcacagtgatattgat
ccattgcatctgtgtactttctttgatcctaagtcatctggagatgaagaaggtgacttc
tctacagatcttgaagttgatgccagcagctatgaacaggtaaataatgtggatttccta
tatgaaaatggagatgggttctacccctgttccaacaccatggatgcatatgctaaaata
gctgaattagtagaatatgtgctcaaggatcagcaggagaagcaggttgaagacattttt
gcagggaaccttattttggatgacattgctactgaaaacactgagaaatttcctgacata
aagatgcagacatgtcttaaacgaactttcctaggctctgcaggggagagttactgtgat
gcttcagaacccaaatataagaaaatcattgaagaccctgcagcgtctgcagggaatggc
agtttctttcctatgcatctcaacagccacccagtgagctgcacctccctcactaaccag
cacatgtcctttcctgttcctgctgcccatgggctggaaaaaagcctcttaattcctgga
ttgtcagaacctttgacctcagagtgcctaccaatcagtgtgaaagggtaccaagagaat
ccaggcttggcaggtcctcctcagcagatatttaactttgttcttgaaaatggcacatct
gatgttgtagtatatccagtgctgacatcttccatggaaacattcatgtctccaagtttt
ccagtaaatttatgtgcacaacatacatatgccacaagccctggaattccagatgcagca
gcagacaaattagcacacttagagaaatttcaagaagttcaagattctataattccttct
gaagaacctttcaaaagaccagagcaagtggaaaatttctgttcatcacttaaggattat
ttccgagacacatgcaaatctgtgaccatggagcaggaggtaaatctggatcacctgttc
attgatgggacacttgttcaaagtcaaactgaaaccaagactggaaagagtagtgcaaaa
gcaatggaaaaggagctggtaacctgcagcctgcaagagaaggaaaagatagccattgat
agaagccaaatatttcaaatcccacagcgtaaagatttagagactaaagtgattgtggtg
ctgggaaaaccaggaatgggcaaaagcattctcattcagaagatctgccaggactggtcc
aacaaagagtttcctcagtttgaatttgtattttggtttgactgcagacaaataagcttg
cctgagaaacaatacagcctgaaggaactgctgcttgaattttttgtaaaacctcaagag
ggaagcaaagagatctttgagtatatattgcaaaatcctgataaagtccttctgattttt
gatggttttaaaggattgcatgatcatgagaattttcatcgttgctcagccaggcagcct
gaaaaggatttgtgcagtataaaggagctgctttcaggactcatccagaaaaagatactc
aatggctgtactttattatttacagcaagaccaaaagacaaactattccagtacatgtcc
aaagtggataagattattgaaattgtaggattttcccctcagcagagagaactgtacata
agcaaatactttgaagaatcaccctattgtgatagtgcactgaaattaatcaaagagtgt
gagtacttgttcagtcattgttacagccctgttatgtgtagatttgtttgttttctctgt
gagacagtgcttgaaatgggagagaagagtcttccttcaactcttactgaagtcttcctg
aaattttttcagcagaagataatgtttatgcaaacagatgttacaatcacaaaaaatcaa
gagagtcttgctaccctagcccgtgtagcctggtgtcttggagaaaagcatcaaagtgcc
atgaaaagtgatcttatttcttctgaggaagttaaagagtttgctctgaagtatggattt
ttcctgccatttgcattccccagacattcagatagtgaagaagaggagtttgggaccaca
ttctctgattttgtcattcagaatttcttgtgtgcacttcaccttttgttagcagaagag
ctcaaggacaaaaatctaacaaagtacctgtcttttctatccaagaagaaaaaacctttt
aactggttagatttaatgcctcgatttttgactggtttggtgtttctccaggatgacccc
tgcttctggtctctttcaaatgaagatgataaacaatcaaccaagaagcagaaaacactc
ttgaaatacattagaaggctgcagattaatactctctgtccagagaggttgctggagctt
ttgcattgtgtttatgaaacacagaacaactatcttctgcagcatgtggctttaagactc
gagccagaattgtcttttctgggcatagttcttacaccacctgatgtccatgtactgcgc
tctattttgaaaaggtcaagaaaagagttttccttggatttgcggaagagcagcattgac
atgcaagggctgcaagtcttggtcagcctgaagaatgtgacatcattcagggcctccctc
agtgacacagttgggctctggagatctttagaacagacaaaagactatgagctgctgaaa
gcatccacagaaaaatttgttcttgaaccctttaaggcaaagacaatgaaggacatcagt
gacctctccaaccttgtagagatgcaggagaagatgaggaattgtgtgcaagaagcgtct
ggttgcaccagctatgaaattcctgccatcaggaacctcagaaaactcgaatttgcgctg
ggtccagcatgtggccttcaaggattgctaaaactcgtgaaaattcttgcagcatttcca
tcacttcagcatttagacctcgatgctctgagtgaaaatggcataggagatgaaggagca
aagagtctatctgaagtctttccaaccctgacatcactggaaacgttaaacttatcacag
aataaaataacagatctgggtgcagagaacctcgctgcagctttcccttccttgtcttcc
ttaaaaacactaagcttgtacaataacaacatttgtgattttggagcagaaaatctggca
aaggttctccctgcaatgacatctttaagagtgctagatgttcagtataacaaaataact
ggtgttggagcccagcagctgactgacagcctacgaaaatgtccccatataaagaacttg
ctgttgtggaatcccaccattccctatggagttcttgaacaccttcagcagctggactcc
aggatcagtgtgtag
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