Cinclus cinclus (white-throated dipper): 134050884
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Entry
134050884 CDS
T10813
Symbol
DDX55
Name
(RefSeq) ATP-dependent RNA helicase DDX55
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
ccic Cinclus cinclus (white-throated dipper)
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ccic03009
]
134050884 (DDX55)
Enzymes [BR:
ccic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
134050884 (DDX55)
Ribosome biogenesis [BR:
ccic03009
]
Eukaryotic type
Pre-60S particles
Helicases
134050884 (DDX55)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
Helicase_C_2
CTT_SPB4
SBF_like
SHOCT
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
134050884
NCBI-ProteinID:
XP_062360277
LinkDB
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Position
17:complement(2305679..2313119)
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AA seq
596 aa
AA seq
DB search
MEAVTEGAWSSLPVPLSPGVLRALRELRFHQMTPVQSATIPLFMSNKDVAAEAVTGSGKT
LAFVIPILEILLRREEKLKKMQVGAIIITPTRELAIQIDEVLSHFTKHFPMFSQILLIGG
RNPMEDVEKFKEHGGNIIVATPGRLEDLFRRKADGLDLASCVKALDVLVLDEADRLLDMG
FEASLNAILDFLPKQRRTGLFSATQTQEVENLVRAGLRNPVRISVKEKGVAASNTQKTPT
RLENYYMICKADEKFNQLVHFLRQHKQEKHLVFFSTCACVEYYGKALESLIKQVKIMSIH
GKMKHKRNKIFTEFRKLPGGILVCTDVMARGIDIPEVHWVLQYDPPSSASAFVHRCGRTA
RIGNVGSALVFLLPMEESYINFLSINQKCPMQEMKPQTNVLDLLPKLKSMALADRAVFEK
GMKAFVSYVQAYAKHECNLIFRIKDLDFASLARGFALLKMPKMPELRGKCFPDFTPVAVN
TDSISFKDKNREKQRQKKLEEQRKEREENQGKKKFVKNKAWSKQKAKREKKKKVTAKRKR
EEGSDIEDEDMEELLNDTRLLKRLKKGKISEEEFEKKLTGNQRFKAETVVDTESEG
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atggaggcggtgactgagggcgcctggagctcgctgccagtgccgctgagcccgggcgtg
ctgcgggcgctgcgggagctccgcttccaccaaatgaccccggtgcagtctgcgaccatc
ccgctcttcatgagtaacaaagatgtggctgcagaagcggtcacaggcagtgggaaaacc
ttggcgtttgtgattcccatactggaaattcttctcagacgggaagaaaaattaaagaaa
atgcaggttggagctataattatcacaccaacgagggaattggccattcaaattgatgag
gtgctgtcacatttcacaaaacacttccccatgttcagccagattcttttaattggtggg
aggaaccccatggaagatgttgaaaaatttaaggagcatggtgggaacatcatcgtggcc
accccgggccgcctggaggatctgttcaggagaaaagcagatgggctggaccttgcaagc
tgtgtgaaggctctggatgtgctggtgttggatgaagcagacagacttctagatatgggc
ttcgaagcaagcttaaatgccattctggactttttgcccaagcagagaaggacaggtctg
ttctcagctacccagacccaggaggtggagaacctggtgagagcaggtctgcggaacccc
gtccgcatctcggtcaaggagaagggagtggcagccagcaacacccagaaaaccccaaca
cgcctggagaactattacatgatttgcaaggcagatgaaaaatttaaccagttggtgcat
tttcttcggcagcacaaacaggaaaaacatctggtctttttcagcacatgtgcctgtgtg
gaatactatgggaaggctctggaatccttaattaaacaggtgaaaataatgagcatccat
gggaaaatgaagcacaagcgtaacaagattttcacagagtttcggaagctcccagggggc
attttggtgtgcacagatgtgatggcccgtggcattgacattccagaagtgcactgggtg
ttgcagtacgacccacccagcagtgccagtgcctttgtgcatcgctgtggtcgcacggca
cggattggcaacgtgggcagtgcactggtgtttttgcttcctatggaagaatcctacatt
aactttctctcaatcaaccaaaagtgtcccatgcaggaaatgaaaccacagacaaatgtg
ttggatcttcttcccaagctgaagtccatggccctggctgacagggcagtgtttgagaaa
gggatgaaagcctttgtgtcttatgtccaggcctatgccaaacacgaatgcaatctcatc
ttccggatcaaagatctggattttgccagtcttgccagaggttttgcattgttaaaaatg
ccaaagatgcctgaactaagaggaaaatgttttccagactttactccagttgctgtcaat
acagactccatttcatttaaagataaaaacagagaaaagcagagacaaaagaaattagaa
gaacaaagaaaagaaagagaggaaaatcaagggaaaaagaaatttgtaaagaacaaagca
tggtcaaagcagaaagcaaagagggagaagaagaagaaagtaacagctaaaaggaaacgt
gaagagggctctgatattgaagatgaggatatggaagagttgctgaatgacacaagactc
ttgaaaagattaaaaaagggaaaaatcagtgaagaagagtttgagaagaaactaacaggc
aaccaaaggttcaaagcagaaactgttgtggacacggagtctgaaggctga
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