Cinclus cinclus (white-throated dipper): 134051047
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Entry
134051047 CDS
T10813
Symbol
SMARCB1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 isoform X1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic03082
ATP-dependent chromatin remodeling
ccic03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
134051047 (SMARCB1)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
134051047 (SMARCB1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ccic01009
]
134051047 (SMARCB1)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccic03021
]
134051047 (SMARCB1)
03036 Chromosome and associated proteins [BR:
ccic03036
]
134051047 (SMARCB1)
Protein phosphatases and associated proteins [BR:
ccic01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
134051047 (SMARCB1)
Transcription machinery [BR:
ccic03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
134051047 (SMARCB1)
SWI/SNF complex
134051047 (SMARCB1)
Chromosome and associated proteins [BR:
ccic03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
134051047 (SMARCB1)
PBAF complex
134051047 (SMARCB1)
SWI/SNF complex
134051047 (SMARCB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
134051047
NCBI-ProteinID:
XP_062360532
LinkDB
All DBs
Position
17:complement(12041405..12052400)
Genome browser
AA seq
386 aa
AA seq
DB search
MMMMALSKTFGQKPVKFQLEEDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEER
KKIVASSHENQRSHSPRRYHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTY
LREQKAKRNNQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHEN
ASQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIAS
AIRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCS
ELGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDA
EMEKKIRDQDRNTRRMRRLANTAPAW
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atgatgatgatggcgctgagcaagacctttgggcaaaagcccgtcaagtttcagctggag
gaggacggcgagttctacatgatcggctccgaggtgggaaactacttgcgcatgtttcgg
ggttccctgtacaagaggtacccctctctctggaggcgcctggccacagtggaagaaagg
aagaagattgtggcctcttcacatgaaaatcagcggtctcacagtccccgaagatatcat
ggctatacgacattagccaccagcgtgaccctgctcaaggcctctgaagtggaagagatc
ttggatggaaatgatgagaagtacaaggcagtgtctatcagcacagaacctcctacctac
ctcagagaacagaaagcaaagaggaacaaccagtgggtgcccaccctgcccaacagctcc
catcacctggatgcagtgccatgctcaacaaccatcaacaggaaccgcatgggcagggat
aagaagagaacattccctctctgctttgatgaccatgacccagcagtgatccatgagaat
gcatcccagccagaggttctggttccaatcaggcttgatatggaaattgatgggcagaaa
ctccgagatgcatttacgtggaacatgaatgagaagctgatgaccccagaaatgttctct
gagattctttgtgatgacctggatttgaatcctctgacctttgtccctgctattgcatct
gccatccgacagcagatcgagtcctaccccactgacagcatcctggaagatcagtcagac
caacgagttattattaagctgaacatccatgtaggaaacatctccctcgtagaccagttt
gagtgggacatgtcagagaaggagaactcaccagagaagtttgctttgaagctgtgctca
gagcttggcctgggcggggagtttgtcactactattgcatacagcatccggggacagctg
agctggcaccagaagacctatgctttcagcgagaaccctttgccgaccgtggagatcgca
attcgcaacaccggggacgctgaccagtggtgccctctcctggaaaccctcacagacgct
gagatggagaagaagatcagagaccaggacagaaacacaaggcgcatgagacgtttggcc
aatactgctccagcctggtaa
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integrated database retrieval system
