Cinclus cinclus (white-throated dipper): 134051176
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Entry
134051176 CDS
T10813
Symbol
CHD6
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 6
KO
K14436
chromodomain-helicase-DNA-binding protein 6 [EC:5.6.2.-]
Organism
ccic Cinclus cinclus (white-throated dipper)
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ccic03036
]
134051176 (CHD6)
Chromosome and associated proteins [BR:
ccic03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
134051176 (CHD6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
Helicase_C
Chromo
ResIII
HTH_CHD1_Hrp3
DEAD
HDA2-3
MUN
Chromo_MIT1
BRK
Motif
Other DBs
NCBI-GeneID:
134051176
NCBI-ProteinID:
XP_062360749
LinkDB
All DBs
Position
18:complement(1651247..1739518)
Genome browser
AA seq
2656 aa
AA seq
DB search
MPPSLKALSLSPMSSAWECKTQDTFASSEEQDKVLHQVTVTATNTSGQCQCPKEEPDGAP
QKRTSTQNGMQDSGGMGVKKKRKKKDLGEQEGGDKAAVEVKPKRRREPKEPKEPKKVKES
KKPKEPKQREVVKKPRKPREPKAPKDPKDKKSGSEPAPRSRPKKSSKDTPVEKKKKGKRK
NEIPVNSLDLDQDLLSSSVQSPEESAESADSQKRRSGRQVKRRKYNEDLDFKVVDDDGET
IAVLGAGRTSALSASTLAWQAEEPPEDDANIIEKILASRMVQKEAHPGGLAFETEEFYVK
YRNFSYLHCKWATLEELEKDPRISQKIKRFRNKQAQMKHIFTEPDEDLFNPDYVEVDRIL
EVAHTKDPDTGEEVTHYLVKWCSLPYEESTWELEEDVDPGKIKEFEALQIPPEIKHMERP
ASESWQKLEKSREYKNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLS
EIFLMGIHGPFLIIAPLSTITNWEREFRTWTEMNAIVYHGSQISRQMIQQYEMVYRDAQG
NPLPGIFKFQVVITTFEMILADCPELKKIQWRCVVIDEAHRLKNRNCKLLEGLKLMALEH
KVLLTGTPLQNSVEELFSLLNFLEPQQFPSETAFLEEFGDLKTEEQVKKLQSILKPMMLR
RLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSKGANQHNMPNLINTMMEL
RKCCNHPYLINGAEEKILEDFRKTHCPEAPDFQLQAMIQAAGKLVLIDKLLPKLIAGGHK
VLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRA
GGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKA
SLKLGLDKAVLQDINRKGSTNGVQQLSKMEVEDLLRKGAYGALMDEEDEGSKFCEEDIDQ
ILQRRTQTITIQSEGKGSTFAKASFVASGNRTDISLDDPNFWQKWAKIAELDTDAKNEKE
SLVIDRPRVRKQTKHYNSFEEDELMEFSELDSDSDERPTRSRRFNEKTRRYLRAECFRVE
KNLLIFGWGRWKDILTHGRFKWHLNEKDMEMICRALLVYCVKHYKGDEKIKSFIWDLITP
TKDGQNQALQNHSGLSAPVPRGRKGKKTKNQMLLPEIKNADWLATCNPEVVLHDDSYKKH
LKQHCNKVLLRVRMLYYLKAEVLGEAADKAFEGTPARELDVLLPDIDYVEIPVDWWNAEA
DKSLLIGVFKHGYERYNAMRADPALCFLEKVGMPDEKLLSAEQGVNDGAQDAAERGSVEK
EESSGEKLEGLSKQEVSGIHTQDGSDSDRSCWPVSSALTARLRRLVTVYQRCNRKELPPR
TEMLVPGNHGYWLQDEMFRRASEMDSVNKEMQKRWTRREQADFYRTVSSFGVIYDQEKKI
FDWAQFRAISRLEKKTDESLEKYFYSFVAMCKNVCGLPLWKEDGTPDPDIYVEPITEERA
ARTLYRIELLRKVREQVLKCPQLQERLKLCRPSLYLPVWWECGKHDRDLLIGTAKHGLNR
TDYYIMNDPQLSFLDAYRNYAQHKRTGFPGPETLCCLYQSNSKLYSSPMYSQMDQTCETL
ENEAESHIKLETVDSTMSQAGGSPLDASCETFMSEVRDIISSNYDESSLPDSLVCMMYDE
KACPSEQSSLARDSPSCTDVGSSVAKLSEGKLEGDEDPSSCDADAMREAPFLEGLQMGSD
QMDNQNEEVEPSPSTPESNPSQSAPTKLGKGLEQKGALASPAAGLPEHRAMERVLGVGLY
SPSLHNYELEVPPEQRFISLLQEKGLEAKLGPSQSHSEEDEEEEEDDDNSEAAADAMEGL
NGPRTRADCDPEAHEMGGEEQSSGLPTPEDTCPEDVNGERESLGLGEPRAEGREDCGLNE
ESTQQHSPGQAQSQPFSLHTPLPQGGPLGQDAEGQTGCTEAPHPDPQGIKQEEYDNRDDG
EKASSNQSQDGPEKYLEEENKNSVSVLPGEIDDLHDARAPTIAQLLQEKTLYSFSEWPKD
RVIINRIDNICHAILKGKWPSSSQQFESQSLLTAPAMASNTGSRSSFTGSETPDPSFNNG
VLMSRVQKEGFLSPAFAKDERKHRRPYEFEMERDAKQRSLEHLAAAHVHPPIVLNGWREA
AVDLSRASDGSPGSSSPFPLNTNMPKLGTVNALQSSLGMDLSGILQAGLIHPVTGQIVNG
SLRRDDAAMRRRRGRRKNVEGMDLIFLKERPLPNRLQDVQEDQPQPPQNSPLPDGPVAAT
STPQPVPAAGSQEKAVPNKSLLDWLRQQSDYTLDVPSFGTNFSDKPKQRRQRCKDPNKLD
ISSLTGEERVPVVHKGTGRRGYLPENKFNRILTEPVLRDTGPRRRGRRPRSELLKGPGVV
ADSSSGMGPLFMNGLIAGMDLVGLQNMRNMQGIPLTGLVGFPAGFAAVPAGEDVKSTLSM
LPMMLPGMATVPQMFGVGGLLNSPMTTTCTVTAPTSLTSTTKGGTASTEKTNEEKQGSQD
GKKEPLAEDKPGPSSFSNQTESAITTSSPVAFNPFLIPGMSPGLIYPSMFLSPGIGMALP
GIQQTRHSEAVNLESQKRKRKKAKGELANPEPETVSLTEKEAANSQNCVEQSPPAAAEKE
QDRPAEEERQAAHNTD
NT seq
7971 nt
NT seq
+upstream
nt +downstream
nt
atgccgccaagcttaaaagcactgagcctctccccaatgtcgtctgcctgggagtgcaag
acgcaagacacctttgccagcagtgaggagcaggacaaggtgctccaccaggtgacagtg
acagccacaaacacaagtggccagtgccagtgcccgaaggaggagcccgacggggctccg
cagaagcggacaagcacccagaacggaatgcaggacagtgggggcatgggggtgaagaag
aaacggaagaaaaaggatctgggagagcaggaagggggagataaagcagctgtggaggtg
aaaccaaagaggaggagagagcctaaagaaccaaaagagcccaaaaaggtgaaggagtct
aagaagccgaaggagcccaagcagagggaggtggttaagaagccacggaaacctcgggaa
cccaaagccccaaaggatcctaaagacaagaagagtggctctgagccagcccccagatca
agacccaagaagagcagcaaagacacccctgtggaaaagaagaagaaagggaagaggaaa
aatgagataccagtgaacagtttggatttggatcaggacctcctgagctcatctgtacag
agcccagaggagtctgcagagtcagctgacagccagaaacgacgctcaggacggcaggtg
aagaggaggaagtacaacgaggacctggatttcaaggttgtggatgatgatggcgagaca
attgctgtgctgggagctgggcgaacctccgcactctccgcctctaccctggcatggcag
gcagaggagcctcctgaggatgatgctaatatcattgagaagatccttgcctccaggatg
gtgcagaaggaggctcatcctggaggcctggcatttgagacagaggagttctacgtcaag
tacaggaacttctcttacctgcactgtaaatgggcaacgctggaggagctggagaaggac
cccaggatctcacaaaagataaagcgtttccggaacaagcaggctcagatgaaacatatt
tttacagagcctgatgaggatttgttcaacccggattatgtggaggtagatcgaattctg
gaggtggctcacacaaaggaccctgacactggagaggaggtcactcactacttggtgaag
tggtgctcactgccctatgaggagagcacctgggagctggaggaggatgttgacccaggg
aagattaaagagtttgaagccctccaaatccctccagaaatcaagcacatggagcgccca
gcatctgagtcctggcagaagctggagaagtctcgggagtacaagaacagcaaccagctg
cgggagtatcaactggagggaatgaactggctgctctttaactggtataacaggaagaac
tgcatcctggctgatgagatggggttggggaagacaatccagtcaatcactttcctctca
gagatattcctgatgggcatccatggccccttcctcatcatcgcacctctctccaccatt
acgaactgggagagggagttccgcacctggacggagatgaatgccatcgtgtaccacggc
agccagatcagccggcagatgatccagcagtacgagatggtgtacagggacgcacagggt
aaccctctccctgggatcttcaagttccaggtggttatcaccacctttgagatgatcctt
gctgactgcccggagctgaagaagatccagtggcgctgtgtggtcattgatgaggcacat
cgcctaaagaacaggaactgcaaactcctggagggactgaagctcatggctctggagcac
aaagtgctgctgacggggacccccctgcagaactcagtagaggaactcttcagcctccta
aattttctggaaccacagcagttcccttcagagacagccttcctggaagagtttggagat
ctgaagacagaggagcaggtgaagaagctgcagtccatcctgaagcccatgatgctgcga
cggctgaaggatgatgtagagaagaatctggcacccaagcaagagaccatcattgaggtg
gagctgaccaatatccaaaagaaatactaccgggccatcctggagaagaatttctccttc
ctctccaagggtgccaaccagcacaatatgcccaacctcatcaataccatgatggagctg
cgcaagtgctgcaatcacccgtacctcatcaatggggcagaagagaagatcctggaagac
ttccgtaaaacacactgcccagaggcaccagacttccagctgcaggcaatgatccaggca
gctgggaagctggtgctcatagataagctgcttcccaagctgatcgctggtgggcacaag
gtgctcatcttctcacagatggtgcgctgccttgacatcctggaagactatctcatccag
agacggtacacctatgagcgcatcgacgggcgggtgcgcggcaacctgcgccaggctgcc
atcgaccgcttctgcaagcccgactcggatcgctttgtgtttctcctgtgcacacgggca
ggcgggctgggcatcaacctgacagctgccgatacctgcatcatctttgattccgactgg
aacccacagaatgacctgcaggctcaagctcgctgccaccggattgggcaaagcaaggct
gtgaaggtctatcgcctcatcaccaggaactcctatgagcgggagatgttcgacaaggcc
agcctgaagctgggcctggataaagctgtgctgcaggacatcaatcgcaagggcagcacc
aatggggttcagcagctctccaagatggaggtggaggacctgctgcggaagggtgcctat
ggcgcactcatggatgaggaggacgaggggtcgaagttttgtgaggaagatattgatcag
atcctccagcgcaggacacagaccatcacaatccagtctgaagggaagggttccaccttt
gcaaaggccagctttgtagcatcaggaaacagaactgacatttccttagatgatcccaac
ttctggcagaagtgggcaaagatagcagaacttgatacagatgccaagaatgaaaaggag
agcctagtcattgacagaccccgggtaaggaagcaaaccaaacactacaactcctttgaa
gaggatgaactgatggagttctctgagctggacagtgactcggatgagcgacccacacgc
tcgcggcgctttaacgagaagacgcggcggtatctgcgggctgagtgcttccgtgtggag
aagaacctgcttatatttggctggggacgctggaaagatatcctgacccatgggcggttc
aagtggcacctgaatgagaaggacatggagatgatttgtcgggccttgctggtgtattgt
gtcaaacactacaagggggatgagaagattaagagttttatctgggacctcatcacacca
acaaaggatggccagaatcaggctctgcagaatcactcaggcttgtcagcaccagtgccc
agaggcaggaaggggaagaagacaaagaaccagatgctgcttcctgagatcaagaatgca
gactggctcgccacctgcaaccctgaggtggtgctccatgatgacagctacaagaagcac
ctcaaacaacactgcaacaaggtcctgctgcgggtgcgaatgctctactacctgaaggct
gaagtgctgggggaggctgcggataaagcctttgaggggactcctgccagggagctggat
gtgctgctgccagacattgactacgtggagatcccagtggactggtggaatgctgaagcc
gataaatccctgctcatcggtgtcttcaagcacggttatgagcggtacaacgccatgcgg
gcggacccagcgctgtgtttcctggagaaggtgggcatgccagatgagaagctgctctct
gccgagcagggcgtcaacgatggggcacaggatgctgctgaaaggggcagcgtggaaaaa
gaagagagcagtggagaaaagctggagggactgtcaaaacaggaggtgagtgggattcac
acccaggatggctccgactcagacagatcctgctggcctgtctcctctgctctcacggcc
agactgcggcgacttgtcaccgtctaccagcgctgcaaccgcaaggagctgcctccccgc
accgagatgctggtgcctggtaaccatggctactggctgcaggatgagatgttccggaga
gcctctgagatggactcggtgaataaagagatgcagaaaaggtggaccaggagggagcag
gcagatttctaccgcactgtctcctcctttggggttatctatgaccaagagaaaaaaatc
tttgactgggcccagttccgagccatctctcggctggagaagaaaactgatgagagcctg
gagaagtacttctacagctttgtggccatgtgcaagaatgtctgtggtctccctttgtgg
aaggaggatggtactccagaccctgacatctatgtggagcccatcacagaggagcgtgct
gccaggaccctgtaccgcattgagctgctgcgcaaggtgcgcgagcaggtgctcaagtgc
ccccagctccaggagcgcctcaagctgtgccggcccagcctctacctgcctgtgtggtgg
gagtgtggcaaacacgaccgggacctgctgattggcaccgccaagcacggcctgaaccgc
actgactactacatcatgaatgacccccagctgtcttttttagatgcatacagaaactat
gcccagcataaaagaacggggttcccaggcccagaaaccctgtgctgcctttaccagtct
aactccaaactctacagttcccccatgtacagccagatggaccagacctgtgagaccctg
gagaacgaagccgagagtcacatcaagctagaaaccgtggacagcaccatgtcccaggcc
gggggcagcccactggatgcaagctgtgaaacgttcatgtctgaagtccgggacataatt
tccagtaactatgacgagagctccctgccagactcactggtttgcatgatgtatgatgag
aaggcctgtcccagcgagcagagctccctcgccagggacagtccaagctgcacagatgta
ggaagcagcgttgccaaactctccgagggcaagctggaaggggatgaagatccatccagc
tgtgatgcagatgccatgagagaggctcccttcttggagggtttgcagatggggtctgac
caaatggacaatcagaatgaggaagttgagccttcgccttctactcctgagagcaatcct
tcacagagtgctccaaccaagctcggcaaaggcttggaacagaaaggagcacttgccagc
ccagcagctggactgcccgagcacagagccatggaaagagtcctaggtgtggggctctac
agtcccagtctacataactatgagctagaggttcctcctgagcagagattcatcagtctg
ctgcaggagaaaggattggaggcaaagttggggccaagtcagagccatagtgaggaagat
gaggaggaagaagaggatgatgataactctgaggctgcagcagatgccatggaaggcttg
aatggtcccaggaccagggctgattgtgaccccgaagctcatgaaatggggggtgaggag
cagagctctggtctccccacacctgaggatacttgcccagaagatgtaaatggcgagagg
gagtccctggggctgggggagcccagggcagagggcagggaggattgtggcttgaatgag
gagagcacccagcagcactcaccaggccaggctcagagccagcccttcagcctgcacaca
cctctgcctcagggggggcctctgggccaagatgctgaggggcagacaggctgcacagag
gccccacaccctgaccctcagggcataaagcaagaagaatatgataacagagatgacggg
gagaaagccagcagcaaccagagccaagatggtccggagaagtacttggaggaagagaac
aagaattctgtttctgtcctgcctggggaaattgatgatcttcacgatgcccgggcaccg
accattgcccagctgctgcaggagaagacgctttactccttctctgagtggcctaaggac
cgtgtgatcatcaaccgcattgacaatatctgccacgccatcctgaagggcaagtggcct
tcctccagccagcagtttgagtcacagagcctgctgacagccccagccatggccagcaac
actggcagcaggagcagctttactgggtcagaaacccctgatcccagcttcaataacggg
gtcttaatgtcacgagtacaaaaggaaggtttcctgagccctgcctttgcaaaagatgag
cggaagcacaggagaccctatgaattcgagatggagagagatgccaaacagaggagcctg
gagcatctggcagcagcccatgtccatccccccattgtgctgaacggctggcgtgaggca
gcggtggacttgtccagagcctctgatgggtccccagggagctcctctccgttccccctg
aacacaaacatgcccaaactggggactgtgaatgccctccagagctccctgggcatggac
ttgtctggtatcctacaggcagggttaatccatcctgtcactggacagattgtaaatggc
agcctccgaagagatgatgctgctatgaggaggagacggggcaggaggaaaaatgtcgaa
gggatggacctcatcttcttgaaggagaggcctcttccaaacaggctgcaggatgttcag
gaagaccagccgcagccccctcagaacagtcccctgcctgatgggccggttgctgctacc
tcaactccacagccagtcccagctgcaggcagccaagagaaggctgtcccgaataagagt
ctccttgactggctccggcagcagtctgactacaccctcgatgttcccagctttggcaca
aatttttcagacaagcccaagcagaggaggcagcgctgcaaggaccccaacaaactggac
attagctctctgacgggagaggagcgggtgccggtggtacataagggtaccggacggcgg
ggctacttacccgaaaacaaattcaatcgcatcctcaccgagcctgtgctccgggacact
gggccacgccggagagggaggaggccccggagtgaactccttaaaggccctggtgttgta
gcagattcgtcttctggaatgggaccattgttcatgaacggactaattgctgggatggat
ctagtgggacttcagaacatgagaaatatgcaagggatccctctgactgggctggtcggg
tttcctgctggctttgcagcagtacctgctggtgaggatgtgaagagcaccctgagcatg
ctgcccatgatgctgccgggcatggccaccgtcccccagatgttcggtgtgggaggactc
ctgaactccccgatgacgacgacttgcaccgtgactgctccaacttcgttaacaagcaca
acgaaaggtggcacagccagcaccgagaaaaccaacgaggagaaacagggcagtcaggat
gggaaaaaagaacctctcgctgaagataagcctggtcctagttcattttctaatcagaca
gaatctgcaataactaccagtagtcctgtagcttttaacccatttcttatcccagggatg
tctcctggactgatctatccctccatgttcctttcccctggcatcggcatggcactgcct
ggcatccagcagaccaggcactcggaggcggtgaacctggagagccagaagcggaagagg
aagaaagcaaaaggggaattggcaaatccagagccagaaactgtctcgctgacagaaaaa
gaagctgcaaacagtcaaaactgtgtggagcagagcccgccagcagcagcagagaaggaa
caggatagaccagcagaggaggagcgccaagctgctcacaataccgattag
DBGET
integrated database retrieval system
