Cinclus cinclus (white-throated dipper): 134051234
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Entry
134051234 CDS
T10813
Symbol
SAMHD1
Name
(RefSeq) LOW QUALITY PROTEIN: deoxynucleoside triphosphate triphosphohydrolase SAMHD1
KO
K22544
deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic03250
Viral life cycle - HIV-1
ccic04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
134051234 (SAMHD1)
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
134051234 (SAMHD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccic03400
]
134051234 (SAMHD1)
DNA repair and recombination proteins [BR:
ccic03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
134051234 (SAMHD1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
PDEase_I
HD_assoc_2
Motif
Other DBs
NCBI-GeneID:
134051234
NCBI-ProteinID:
XP_062360865
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Position
18:complement(1586729..1615465)
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AA seq
602 aa
AA seq
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MGSPAGAPAKRARCEGTRGPGSDPRLWDTERLCQHLSRCGVGDPGLLRRFRESGVTGRML
LDLPACAPELIRVCCPAERLEVLACLRQLQQQHMEVMKVFNDPIHGHIELHPLLVQIIDT
PQFQRLRYIKQLGGTYFVFPGASHNRFEHSLGVGYLAGCLVRTLKERQPDLGITQRDILC
VEIAGLCHDLGHGPFSHMFDGRFIPLTRPDLKWKHENASVQMFEHLVTSNKLEEVMRSYG
LVLEEDMLFIKEQIGGPIEETACVKSWPYRGRPKEKSFLYEIVANKKNGIDVDKWDYFAR
DCHHLGIPNNFDYKRLLIFTRVCEVKNQKHICTRDKEVGNLYEMFHTRNCLHRRAYQHKT
GNIIEIMITEAFQKADRFLEIKGSGGKVYRISTAMEDMEAYTKLTDCIYLEILHSNNPEL
EEAQEILRKVERRELYKFLGETRPESKKEIVKSNILAESIANSKPKKDPPDVELKAENFI
VDVISMDYGMKEQNPIDKVHFYCKADPSKAVKISKEQVSKLLPIIFMEQVIRVYYKSQDP
RIISAAKQYFVQWCMQNDFTKPQDGDVVAPHLIPMKEGWNNVHHEHRRASEPSCKQRLSF
DE
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atggggagcccggcgggcgctcccgccaagcgcgcgcggtgcgaggggacccgcggcccc
ggcagcgacccgcggctgtgggacacggagcggctctgccagcacctgtcccgctgcggc
gtgggcgatcccggcctgctgcgccgcttccgagagagcggagtcaccgggaggatgctg
ctggacctgccggcctgcgcccccgagctcatccgcgtctgctgcccagctgagcgactg
gaagtgctggcgtgcctgagacagctgcaacagcagcacatggaggtgatgaaggttttt
aatgatcctattcacgggcacattgaattgcatcccctgctggttcagatcattgacacc
cctcaattccagcgcctccggtacatcaagcagctgggtggcacgtactttgtttttcca
ggagcctctcacaaccgctttgaacactccctaggggttggctaccttgcaggatgtctg
gttcgtacactgaaggagagacaaccagacctgggtataacccagcgagacatcctctgt
gtagaaattgctgggctttgtcacgatttgggtcatgggccattttcacatatgtttgat
ggaagatttattccactcactcgtccggatttgaagtggaagcatgaaaatgcttctgtt
caaatgtttgagcacttggtcacttccaataaactagaagaagtcatgaggtcatatggt
cttgtcctggaggaagatatgttgttcatcaaggaacaaataggagggcctatagaggaa
actgcctgtgtgaaatcgtggccctaccgtggtcgaccaaaggagaaaagtttcctctat
gagattgtagctaataaaaaaaacggcattgacgttgacaagtgggattattttgcaagg
gattgccatcacctgggaatcccgaataattttgactataaacgattgcttatcttcact
cgggtctgtgaagtgaaaaaccagaagcacatctgcacccgtgacaaggaagttggaaat
ttgtatgagatgttccacacccggaattgcctgcaccggagagcataccagcataagact
ggcaacatcattgaaataatgataacagaagcctttcagaaagcagacagatttttagaa
ataaaaggctctggaggaaaagtgtatcggatttctacagcaatggaagacatggaagcc
tacactaaactgactgactgtatctacctggaaattctgcactcaaataatccagaactg
gaggaggcacaagaaattttgcgtaaagtagaacgacgtgaattatacaaatttttagga
gagactcgacctgaatcaaagaaggaaattgtaaagagtaatatcctggcagaaagcatt
gcaaattccaagccaaagaaggaccctccagatgtggagctaaaggctgagaatttcata
gttgatgttatcagcatggattacggaatgaaggaacagaatccaattgataaagttcac
ttctattgcaaggctgatccttccaaggcagtcaaaatcagtaaagaacaggtttcaaag
cttttacccataatatttatggagcaggttatccgggtttattacaaaagtcaggatcca
cgtattatttcagctgcgaaacagtactttgttcagtggtgtatgcagaatgatttcacc
aaaccacaggatggtgatgttgttgctcctcatctaattccaatgaaggaaggctggaat
aatgtgcatcatgaacacaggagagcctcagaacccagctgcaaacaaaggctttctttt
gatgaataa
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