Cinclus cinclus (white-throated dipper): 134051259
Help
Entry
134051259 CDS
T10813
Symbol
PRPF6
Name
(RefSeq) pre-mRNA-processing factor 6
KO
K12855
pre-mRNA-processing factor 6
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134051259 (PRPF6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccic03041
]
134051259 (PRPF6)
Spliceosome [BR:
ccic03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
134051259 (PRPF6)
Complex C
U5 SnRNP specific factors
134051259 (PRPF6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP1_N
TPR_14
TPR_19
HAT_PRP39_N
TPR_16
Suf
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_17
TPR_2
TPR_8
ARM_TT21_2nd
FAT
TPR_CcmH_CycH
TPR_1
T7SS_EccA1_N
ARM_TT21_C
ARM_TT21_5th
TPR_21
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
134051259
NCBI-ProteinID:
XP_062360900
LinkDB
All DBs
Position
18:9064538..9089061
Genome browser
AA seq
941 aa
AA seq
DB search
MNKKKKPFLGMPAPLGYVPGLGRGATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQM
KKNQTADDDDEDLNDTNYDEFNGYAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERR
EQREKEEIEKYRMERPKIQQQFSDLKRKLAEVTEEEWLSIPEVGDARNKRQRNPRYEKLT
PVPDSFFAKHLQSGENHTSVDPRQTQFGGLNTPYPGGLNTPYPGGMTPGLMTPGTGELDM
RKIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTDLNSMIPTHGGDINDIKKARLLLKS
VRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTAKA
VVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEEPEDAR
IMLSRAVECCPTSVELWLALARLETYENARKVLNKARENIPTDRHIWITAAKLEEANGNT
QMVEKIIDRAITSLRANGVEINREQWIQDAEECDKAGSVATCQAIMRAVIGIGIEEEDRK
HTWMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRA
VAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYER
ARRLLAKARSSAPTARVFMKSVKLEWVLGNIAAAQELCEEALKHYEDFPKLWMMKGQIEE
QKELVEKAREAYNQGLKKCPHSIPLWLLLSRLEEKVGQLTRARAILEKSRLKNPKNPDLW
LESVRLEYRAGLKNIANTLMAKALQECPNSGILWSEAIFLEARPQRKTKSVDALKKCEHD
PHVLLAVAKLFWSERKITKAREWFHRTVKIDSDLGDAWAFFYKFELQHGTEEQQEEVRKR
CENAEPRHGELWCDVSKDIENWQKKIGEILVLVAAKLKNTF
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagaagaagaagccgttcctgggcatgcccgcgcccctgggctacgtgccgggg
ctgggccgcggagccacgggtttcaccacgcgctctgatatcggccctgcccgcgatgcc
aacgaccccgtggacgaccggcacgccccgccgggcaagagaactgtgggggaccagatg
aagaagaaccagacagcagatgatgatgatgaggatttgaatgacaccaactacgatgag
ttcaatggctacgctgggagcctgttctcaagtggcccctatgaaaaagatgatgaagaa
gcagatgctatttatgcagctttggataagaggatggatgaacgcaggaaagaaaggagg
gaacaacgagaaaaagaggaaatagaaaagtaccgtatggaacggcccaaaattcaacag
cagttctcagacttgaaacggaaattagcagaggttactgaggaggagtggctgagtatt
cctgaggttggggatgccaggaacaagcggcagaggaatcctcgttatgagaagctgact
cctgttcctgacagcttctttgcaaagcatttgcagtcaggggagaatcacacttctgtg
gacccacgccagacacaatttggtggactgaatactccatatccagggggtttgaatact
ccatacccaggaggaatgacaccaggcttgatgacacctgggacaggtgaattggacatg
aggaagattggccaagccaggaacaccttgatggatatgaggctaagccaggtgtcggac
tctgtgagtggccagactgtagtggaccccaaaggatatttgacagacttgaattccatg
attcccacacacggaggagatatcaatgatatcaaaaaagctcgtttgctcctgaaatct
gtccgagagaccaatcctcatcatccaccagcctggatagcatcagcccgactggaggag
gtcactggcaaactccaggtggctcgaaacctcatcatgaaaggaacagagatgtgccct
aagagtgaagatgtttggttggaagctgctcggcttcagcctggagatacagccaaggct
gtggtggcccaggctgtgcggcacctgccacagtctgtgcggatctatatcagagcagca
gagctggagacagacatccgtgccaagaaacgtgtcctcaggaaagcccttgagcatgtt
ccaaactcggtgcgtttgtggaaagcagctgtggagctggaggaacctgaggatgccagg
atcatgctgagcagggctgtggagtgctgtccaaccagtgttgaactgtggctggcgctg
gcaaggctggagacatatgagaacgctcgtaaagtccttaacaaagcccgggagaatatc
ccgacggatcgtcacatctggattactgctgccaaactggaggaagccaatgggaacacc
cagatggtggagaaaatcattgacagagccatcacttctcttagggctaacggtgtggaa
atcaacagggagcagtggatacaggatgctgaggaatgtgataaagctggaagtgtggcc
acatgccaggcaatcatgagagctgtgattgggattgggatcgaggaagaagatcggaag
cacacctggatggaagatgcagacagttgtgttgctcataatgccctggagtgtgcccga
gccatttatgcctatgccttgcaagtcttcccgagcaagaagagtgtgtggctgcgagca
gcctactttgagaagaaccatggaaccagagaatccttggaggctcttttgcagagagct
gttgctcactgtcccaaagcagaggtgctgtggctcatgggagccaaatccaagtggctg
gcaggagatgtgccagcagccagaagcatcttggccctggctttccaggccaaccccaac
agcgaggagatctggctggctgccgtgaagctcgagtctgagaacaatgagtatgaaaga
gcaaggaggctgctggcaaaggctcgcagcagtgcccccacagcaagggtcttcatgaag
tctgtgaagttggaatgggtgcttgggaacattgctgcagcccaggagctctgtgaagaa
gccctgaagcactatgaggacttccccaagctctggatgatgaaagggcagattgaggaa
caaaaagagctggtagagaaagcacgggaggcttataatcaagggttgaagaagtgcccc
cattccatacctctctggcttttgctgtccaggctggaggagaaagttgggcagctgacc
agagccagagccatcttagaaaagtctcgcctgaagaatccaaagaatccagatctctgg
ttggagtctgtgcgcttggagtaccgagctgggctgaagaacattgcaaacactctgatg
gccaaggcactgcaagagtgccccaattcaggaatcctgtggtcagaagcaattttcctt
gaagcacgaccgcaacgaaagaccaagagtgtggatgctctcaagaagtgtgaacatgat
ccacatgtcctgctggctgtggccaagctgttctggagtgagcgtaaaataaccaaggcc
agagagtggttccaccgcacagtgaagattgactctgacctgggggatgcctgggccttc
ttttacaaatttgagctccagcatggcacagaggaacaacaagaagaggtgaggaagcgc
tgtgagaatgctgaacctcgccacggagagctctggtgtgatgtctccaaggacatagag
aactggcagaaaaagattggagagattcttgtgcttgtggcagccaagctgaaaaatacc
ttctag
DBGET
integrated database retrieval system
