Cinclus cinclus (white-throated dipper): 134051582
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Entry
134051582 CDS
T10813
Symbol
SETX
Name
(RefSeq) probable helicase senataxin
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
ccic Cinclus cinclus (white-throated dipper)
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccic03021
]
134051582 (SETX)
Enzymes [BR:
ccic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
134051582 (SETX)
5.6.2.5 RNA 5'-3' helicase
134051582 (SETX)
Transcription machinery [BR:
ccic03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
134051582 (SETX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
AAA_19
AAA_30
UvrD-helicase
Viral_helicase1
AAA_22
SLFN-g3_helicase
AAA_16
ResIII
DUF4164
RNA_helicase
nSTAND3
Motif
Other DBs
NCBI-GeneID:
134051582
NCBI-ProteinID:
XP_062361391
LinkDB
All DBs
Position
19:4442089..4466668
Genome browser
AA seq
2782 aa
AA seq
DB search
MSTCRWCTQSGADTTEFLKHYAAQRLSQEDFEGSNDDLCYCLECVVEYHKAREECPRLHE
DLWDLETSRLIAHMEKSMNEETGEDELFLIDEHGETPLSGYVGPNFENNVRVPLLEILKY
PYLLLHKKISELCVEVLCRMELSQDSFQVFEKYPGIYLFLVHPNEMIRRWAILTARNLGK
VDRDDYYDLEEVLTCLFKVIELGLFENPDIYSSSMFEKGKLILLPAHLYDTANYKNYWLG
ICMLLSVLEEQAMDSLLLGPDKQNDFMQSILHTMEKEAADDSTDPFWPALHCFMVILDQL
GSKVWGQLIDPVQAFQTIINSVSYNNEIKNIRSSFRRTKSEPESDYSDDMISCSQIVYNY
NTEKPQKDTGWKAAICPEYCPNMYEDMQTLANMLQSDIGRDLRVHHSTFLWFIPFVQSLM
DLKDLGVAYIVEVIHYLCSEIKDILIERIQQCDKISEFFLLILVCIVELHRSKKCLHLLW
ISSQEWVEAVVKCATLPSRAFTRCSEKAPGLCAKGSAVGSFQTPSSVQHACVQLIRSLLK
EGYQIGQHALCKQYLDKLNLLLRGNRAVGWQLSSQETQELQMCLKQVIRNIKGKALSTSL
AGGNSSNSTALPTVFIKHERNACDDGYKMSGHERRDLYSPFVTSKEGRDCQESPFHRRKN
AWEEECRDACRSSTSCTSTESLLMNIKKEPDDLAAQEFIFPQNALATKVCGKLHENNNSD
LAAGKYNTDDECFNSNTQHSDFRRGRELDMKQKAEHKTPPCLSAQTHVDSLSSRNCKSTQ
EMSTNSVFQSRLMPTKQVFKEDSSNSSRNESGMQGKEDDSTSLLGYNDTSLKKVSTEEKS
GSSLMSFFKKKTNVQTSNQEQPNLNDLGKRDCKNQFSETFCRRDNISACGYFPFSSENKR
DMIRPLSVKRESSDRLFEFSEYFKRENSSVGKKEEDFVETVSKDDALLDSQIDRELSKLS
LAAYARSVNFPVESLQESSVCHNVSDIKRKVKGSVRSSNEGQSTKCPSGADGPSNQVIII
SDSSDEEKGVADKEETKTKNENVCAEESSTSSSISDSDTKRESNPPGSPLLVDECDSQYF
EFETEADVFSAWQDTQAYAVETTQECKQDRVSPAAEMSNSDDCLNDDLNDWGYDLHYFSD
DSVEEAASSIEKQAEDTSYQKEADGTKEATNSTLEESVGKEDAKGQLEKCADKGGAKGFT
PDSKLPEPRASTSPISLASKLALKKNSTIPRKTTAKCKSALSVQRSPKKPPLVKTAKNKT
TLQSTAERSQPGRSMPAVVPPRKVRQSPAPASTVEKLGLKKGPRKAFDLSQPSLESLAQL
RSHGKAAGRIGVAQKRRTKQIEAQCLSVKRNKKLLVCQDRQYLRQIRPKRSVKNSAGSWE
SRNKVTKVCAKPVEQKPQHFELTAIKESVENQREIKREEIACPSTSERKFENLSVEEVAS
ASKMPYCSDWNRKWEGNSVVVPPVPMDSSLTALGDDKDESSGKGCTVLPECEMKTSKQNG
CKSDESSDEGDDNLFLTQLDPVDMELCSQEECVQDAATGSKTPEEMDVDESLQQNEPSAV
VKCKDKDCTEQVEKPGEYCSKHPTTSPGADHVFAKPSLPPPKIRKPSTTKIFSSKSSSRN
AAFSKDLEDGRKLPPPSKSKLNAAKAVVVRPPPYPKPAPAGNPTCRSSSSSNVPQPLSSK
NVLQLQNRHYENTSNISRGPGQETYSSFLGAQQRDYSIFVNHVLKWTYEMFANFSLFGTP
DDLLHSIVASVPVNFQGYNEYFNTFFPLMMLNAFETLAQEWVENQKVREKSYYFYLENFS
ADMNTAHFTAHLRESDLARQLHPKEDDLILLVVHKEKETFGVESGMESHIVNHVGLVTRF
SRPSGYANRQKEQRSACYLTVQTRGNLSFFIHKQVQCVVVGSLVTTHRKFKGLLLLSRSP
LAKPIINPSYNDFCPRDLPVASGSAASYMNEYNEDQKRAIETAYAMVKQHPGLPKICLIH
GPPGTGKSKTIVGLLSRVLRENTRNEKTARKKNSKIKPNRFLVCAPSNAAVDELMKKIII
AFKEKCQNKQEPLGNCGDIKLVRLGAEKSINSEVRGFSLDKQVEHRMKRKPGDCDQDIQK
KKQALDQKLDMLSRERAMHRCEKRESQMLNDEIGRLAKERQQLASQLKEARGHSQKVQAD
IILESDIICCTLSTSGGSLLESAFSRQGLDPFSCVIVDEAGQSCEVETLIPLIHRCNKLV
LVGDPKQLPPTVKSVKAQQYGYDQSLMARLQRHLEKQVQRNMLHSLPVVQLTVQYRMHPD
ICLFPSNYVYGRTLKTAKAIEENRCSSEWPFQPYLIFDVADGREERDNDSYSNPREVKLV
MELIRTIKEKRKDLGLRRIGIITPYSAQKKKIQEQLDSVFKNNSSPEVDTVDAFQGREKD
CIIVSCVRANSSEGSTLPHVQASSSKGSIGFLASLQRLNVTITRARFSLFILGRLQTLME
DENWNHLIQDAQKRGAIIRTTEKSYKKEALRILKLRPPGQAPAKGGMMTSPVVQAGSSSG
KRSEPGNSGNSPRELAVGPGHAVPQGSQGPTQPAGTPAADCNRGSAPASMGASPADSRRG
SAPAPLGTPAADSRRGSAPAPLGTPAADSRRSNVPAPLGTPAADSRRGSAPASMGAAALA
AIPEKPRDPRLASLASRTEAKGKEQPLKDGHQSAQSIPGLTPQHGLDVSSAARDQIYRTE
NARKAQQTAGQYNVLPTAPHTAQHEGDRRAAVSKSSSKAPGEGGQSSSSGWNKDSRGLSR
RPSQEAPEDTATGSAKRRKIFS
NT seq
8349 nt
NT seq
+upstream
nt +downstream
nt
atgagcacatgccgatggtgcacacagagtggtgctgacaccactgagttcctgaagcac
tatgctgctcaaaggctgtcccaggaagattttgaaggatccaatgacgacctctgttac
tgcctggagtgtgtggttgaatatcacaaagcaagggaagaatgtccaagattgcatgag
gacctgtgggacttggaaacctcccgcctcattgcccacatggagaagtccatgaatgaa
gaaacaggagaggatgagttgtttctgattgatgagcatggggagacacctctgtctggt
tatgtgggcccaaattttgagaacaatgtgcgagtgcccctgctggaaatactgaaatac
ccatatctgctgctgcataagaaaatcagtgagctgtgtgtagaagtgctctgtagaatg
gaactgagtcaagactcctttcaggtctttgagaaatacccaggaatttatctctttttg
gtacacccaaatgagatgattcgtcgatgggccatcctaacagcaaggaatttagggaag
gttgacagggatgattattacgacttagaggaagtactgacttgtttgttcaaagttatt
gaattgggactttttgagaatccagatatttacagctcttcaatgtttgaaaagggtaaa
ctcatccttctgccagctcatttgtatgatacagccaactacaagaactattggctggga
atttgcatgttgctgtcagtgctggaagaacaagctatggactctttattactgggccca
gacaaacagaatgatttcatgcagtctatacttcacactatggagaaagaagcagctgat
gattccactgaccccttctggcctgccctgcactgtttcatggttattttggatcagctt
ggatctaaagtttggggtcagctgattgatcctgtccaagcctttcaaaccataatcaac
agtgtgagctacaacaatgaaatcaaaaatattcgcagtagctttaggaggacaaaatct
gagccagagtcagactacagtgatgacatgatttcttgcagccagattgtgtataattat
aacacagaaaagcctcaaaaggacactggctggaaagctgccatttgcccagagtactgc
cccaacatgtatgaagatatgcagaccctggctaacatgctgcagtctgacattggcaga
gacctgcgtgtccatcacagcacattcctctggttcatcccttttgttcagtcccttatg
gatctcaaggacttgggtgtagcctacatagtggaggtcatccactacctctgctcagaa
atcaaagatatcctcatcgaaagaatccagcagtgcgacaaaatctccgagttcttcctc
ctcatcttggtgtgcattgttgagctacacagaagtaagaagtgcttgcatttgctgtgg
atcagctcccaggagtgggtggaggcagtggtgaagtgtgccacgctgccaagcagagcc
ttcactcggtgcagcgagaaggccccagggctgtgtgccaagggctcggctgtgggctct
ttccagacccccagctcggtgcagcacgcctgcgtgcagctcatccgcagcctgctcaag
gagggctaccagataggccagcatgccctgtgcaagcagtacctggacaaactgaacctc
ctcctgcggggaaatcgagctgtgggctggcagctgagcagccaggaaacccaggagctg
caaatgtgtttaaagcaggttataagaaatataaagggcaaagcgctgagcacctctttg
gctggaggaaacagttccaactcaacagctttgccaactgtctttataaagcatgaaagg
aatgcttgtgatgatggatacaagatgagcggacacgagaggagggatctttattcacca
tttgtcacatcaaaggaaggcagagattgtcaagagagccctttccacaggagaaagaat
gcctgggaagaggaatgtagggatgcatgtaggagttcaacatcttgcacatccacagaa
agcctcttgatgaatattaaaaaggaacctgatgacttggcagctcaggagtttatcttc
ccacagaacgctttggcaacaaaagtatgtgggaaacttcatgaaaataacaactctgat
cttgcggcagggaaatacaatacagatgatgagtgcttcaattcaaacacccagcattca
gatttcaggagaggcagagaattagacatgaaacagaaggcagaacacaaaacgccacca
tgtctgtctgctcaaacgcatgttgattctctatcttcaaggaattgcaaaagtacgcaa
gagatgagtacaaacagtgtgttccagtccagactgatgcccactaaacaggtcttcaag
gaagattcctctaactcctctagaaatgaatctggtatgcaggggaaggaagatgacagt
acctcgcttttagggtataatgacacctcactgaaaaaagtatcaacagaagaaaaatca
ggttcatcgttgatgtctttctttaagaaaaagaccaatgtgcaaacttcaaatcaggag
cagcctaatttaaatgatctgggtaaacgtgactgcaaaaatcaattttcggagacattt
tgtaggagggataacatttcggcctgtggttattttccatttagctcagaaaacaagagg
gatatgatcaggccactgtcagtgaagcgtgagtcaagtgacaggttgtttgagttttca
gaatatttcaagagggaaaacagttcagtggggaagaaagaggaggattttgtggagacg
gtttctaaagatgatgctttgttggactcccagattgatagagaactcagtaaattatct
ttagctgcttatgccagaagcgtcaattttcctgttgaatccctccaggaaagctcagta
tgccacaatgtgtctgatattaaaaggaaagtgaaaggttctgtaagatcttccaatgag
ggccaaagtaccaagtgtcccagtggtgcagatggccctagcaatcaagtcattataatt
tcagactcttctgatgaagaaaaaggtgtggccgacaaggaggaaacaaaaaccaagaat
gaaaatgtgtgtgcagaggaatcttcaacttccagcagtatttctgatagtgacactaaa
agagaatcaaatcctccaggctctcccctattagtggatgaatgtgattctcagtacttt
gagtttgaaacagaagctgatgttttttcagcttggcaggatactcaagcatatgctgtg
gaaacaactcaggagtgtaaacaagatcgtgtttcaccagcagctgagatgagtaattca
gatgactgcctgaatgatgacttaaatgactggggctatgacctgcattactttagtgat
gactccgtagaagaagcagcaagctcaatagaaaagcaggcagaagatacttcttatcag
aaagaagctgatggtacaaaggaagcgactaattcaaccttggaagaatcagttggcaag
gaagatgcaaaaggtcagctggagaaatgtgcagacaaaggtggtgctaaaggcttcacc
ccggattcaaaattgcctgaacccagagcatctacatctcccatctcattagcttcaaag
ttggcccttaagaaaaacagcacaatcccacggaagaccacggcaaaatgtaaatcagca
ctgtctgttcagagaagtcctaaaaaacctccccttgttaaaacagccaaaaataaaaca
actctccaaagcacggcagaacgttctcagcctggcaggtcgatgcctgctgtggttcct
ccaaggaaggttcggcagagtcctgctccagcttcaactgtggaaaagcttggcctgaag
aaaggcccccgcaaggcatttgacttgtcccagccctccctggagagcctggctcagctg
cgcagccacggcaaagctgcaggcagaattggagttgcacagaaaaggagaaccaaacag
attgaggctcaatgtttgtctgtaaaacgtaataaaaagctgctcgtctgccaggaccga
cagtatctaaggcagataaggcccaaaagaagtgtgaaaaattctgcgggaagttgggag
agcagaaacaaggttaccaaagtgtgtgcaaaacctgtggaacaaaagcctcaacatttt
gaactgacagctattaaagaatctgttgaaaaccagagggagataaaaagagaagagatt
gcttgtccttccaccagtgagagaaaatttgagaacctctctgtggaggaggtggcaagt
gcctctaaaatgccttattgctcagactggaacagaaaatgggaaggtaacagtgtggtg
gttcctcctgtccctatggattcaagtctcactgcacttggagatgataaagatgagtct
tcaggaaaaggttgcactgtcctgcctgagtgtgagatgaaaacctcaaagcaaaacggg
tgtaaatcagatgagagcagtgacgaaggtgatgataatctgtttttaacccagttagat
cctgtggatatggagttatgttctcaggaagaatgtgttcaagatgctgcgacaggtagt
aagaccccagaggaaatggatgttgatgaaagccttcagcagaatgaaccctcagctgtt
gtgaagtgtaaggacaaagactgtacggaacaggtggaaaaacctggagaatactgcagt
aaacacccaaccaccagcccaggggctgatcacgtgtttgccaagccttctctaccacca
cctaaaataagaaaaccttccactaccaaaattttcagctcaaaaagttcttcacggaac
gcagccttcagcaaagatctcgaagatggcagaaagttgcccccaccttcaaaaagcaaa
ctgaacgcggccaaagcggtggtggtcaggccaccaccatatccaaaacctgcaccagca
ggaaatccaacgtgcagatcttcaagttccagtaatgtacctcaaccccttagttccaaa
aatgttctccagttacaaaatagacactatgagaacacttcaaatatttccagagggcct
ggccaagaaacctactcctcttttcttggcgctcagcagcgcgattacagcatttttgtt
aaccatgtcctaaagtggacttatgaaatgtttgcaaacttcagcctctttgggactccg
gatgatcttctgcattccatagtagcctctgttcctgttaattttcagggctacaacgaa
tattttaatacgttttttcccttgatgatgctcaacgcctttgaaacactggcacaagaa
tgggtagaaaaccagaaagtaagagagaaaagttattacttctacttagagaacttttct
gctgacatgaatacagcacattttacagctcatctacgagagagtgatttggcgagacag
cttcatccgaaggaggatgacttaatccttttggtggtccacaaggagaaggaaactttt
ggggtagaaagtgggatggagagccacatagtgaatcatgttggccttgtgacacgattt
tctcgtccatctggctatgcaaatagacaaaaagagcagcgaagtgcctgttatcttact
gtgcaaacccgtggcaatttgtcattcttcatccataagcaagtgcagtgtgtggtggtt
ggctccctggtgaccacacacagaaagttcaaaggtctgctgctgctgagcaggagtccc
ctggctaaacccatcataaatccaagttacaatgacttctgtcccagagatctgcctgtt
gcctcaggaagtgctgcttcatatatgaatgaatacaatgaagatcaaaagagagccatt
gagacagcttatgctatggtaaagcagcacccgggacttcccaagatctgccttatccat
ggaccacctgggacagggaaatcaaaaactattgtaggactcctgtcccgtgttttgaga
gaaaacactaggaatgagaaaacagctcggaaaaaaaattccaagattaagccaaaccgt
tttctagtttgtgcaccatcaaatgctgctgttgatgagctcatgaaaaagatcatcatt
gcatttaaggaaaaatgccaaaacaaacaggaacctttgggaaattgtggtgatatcaaa
ttagtacgacttggcgctgaaaaatcaatcaacagtgaagtccggggattcagcctggat
aagcaggttgaacacagaatgaaacgaaaaccaggtgactgtgaccaggacattcagaag
aagaagcaagctctggatcagaagctggacatgctctctcgagagcgtgccatgcacaga
tgtgagaagagagagagtcaaatgttaaatgatgaaattggcagacttgcaaaggagaga
cagcaacttgcttctcagctaaaggaggctcgggggcactcccagaaggtgcaggcagac
atcatcctggagtctgacatcatctgctgcacgctgagcaccagcggggggagcctgctg
gaatcggctttctcccggcaggggctcgatcccttcagctgtgtcatcgtggatgaggca
ggacagtcctgtgaggtggaaactctaattccactgatccatcgctgtaataaacttgtc
cttgttggagatcccaaacagctccctcctactgtcaaatcagtaaaagctcagcagtat
ggctatgaccagtctttgatggcccgtctgcagaggcacctggagaagcaagtgcagagg
aacatgctgcacagcctgcctgtggtgcagctgaccgtgcagtacaggatgcacccagac
atctgcctcttcccatccaactatgtttatggcaggactctaaaaactgccaaggcaata
gaggagaacagatgttcttcagagtggccattccagccctacctgatttttgatgtagcc
gatggtcgtgaggagcgagacaatgactcttacagcaatcctcgggaagtcaagctggtg
atggagttaattagaacaattaaagaaaaaaggaaggatctgggccttcgtcgcattgga
ataattaccccttacagtgcccagaaaaagaaaattcaggaacaattggacagtgtgttt
aagaataacagcagcccagaagtggacacggtggatgcgttccagggccgagagaaggat
tgcatcatcgtgtcctgtgtgcgggcaaacagctccgagggctccactctgccacatgtg
caggcaagcagcagcaaaggatccattgggtttctggcgagcctgcagcgattgaacgtc
accatcacccgagcccgcttcagcctcttcatcctgggccggctgcagacactcatggaa
gatgaaaactggaatcacttgattcaggatgctcagaaaagaggcgccattatcaggaca
acagaaaaaagttacaagaaagaggctctgaggattttgaagctgaggccaccaggacag
gccccagccaaaggagggatgatgacatctcctgtggtgcaggctggttcttccagtgga
aagagaagtgagcctggaaattctgggaacagcccacgggaacttgctgttggccctggc
catgcagtgccccaaggaagccaagggcccacacagcctgcagggactccagctgcagat
tgcaacaggggcagtgctcctgcatccatgggggcttcacctgcagattccaggaggggc
agtgctcctgcacccttgggaactccagctgcagattccaggaggggcagtgctcctgca
cccttgggaactccagctgcagattccaggaggagcaatgttcctgcacccttgggaact
ccagctgcagattccagaaggggcagtgctcctgcatccatgggggctgcagcccttgct
gccattccagagaaaccacgggacccaaggctggcaagcctggccagtcgaactgaagcc
aaaggcaaggagcagcccttgaaggacggccatcagtcagcccagagcatcccaggattg
acaccacagcacggcctggatgtgtcctcagctgccagggatcagatttacagaacagaa
aatgccaggaaggcccagcagacagcaggacagtacaatgtgcttcccacagcccctcac
acagctcaacacgagggcgaccggagagcagctgtgtccaaaagcagttccaaagcccct
ggtgaaggaggtcagagcagtagcagtgggtggaacaaagactctcgtggtttatcaagg
agaccatcccaagaagcaccagaggacacagcaacaggctctgccaagagaagaaagatc
ttttcctga
DBGET
integrated database retrieval system
