Cinclus cinclus (white-throated dipper): 134051595
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Entry
134051595 CDS
T10813
Symbol
TNC
Name
(RefSeq) tenascin isoform X1
KO
K06252
tenascin
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic04510
Focal adhesion
ccic04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
134051595 (TNC)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
134051595 (TNC)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ccic00536
]
134051595 (TNC)
Glycosaminoglycan binding proteins [BR:
ccic00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
134051595 (TNC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
EGF_TEN
Fibrinogen_C
EGF_Teneurin
EGF_2
EGF_Tenascin
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
Fn3_Dep-1_2nd
Interfer-bind
EGF
NDNF
Big_5
hEGF
Motif
Other DBs
NCBI-GeneID:
134051595
NCBI-ProteinID:
XP_062361416
LinkDB
All DBs
Position
19:8604931..8650087
Genome browser
AA seq
2050 aa
AA seq
DB search
MGLPSQVLACAILALLSQHVTGGLIKRMIRQKRETGLNVTLPEDNQPVVFNHVYNIKLPI
GSLCSVDLDTASGDADLKAEIEPVKNYEEHTVNEGNQIVFTHKINIPRRACGCAAAPDIK
DLLSRLEELEGLVSSLREQCASGAGCCPNSQAAEGRLDTTPYCSGHGNYSIEICGCVCEP
GWKGPNCSQASCPSDCNDQGKCVDGLCVCFEGYTGPDCSQELCAQGCGAHGRCVGGQCLC
HEGFVGDDCSVPLCPHNCHGRGRCVDSECLCDEGYTGEDCSELICPNDCFDRGRCVNGTC
FCEEGFTGEDCGEPTCPNDCHGNGRCEKGLCVCHEGFVGDDCSDRRCPNDCHNRGRCVAG
RCVCHEGYLGEDCAELRCPSDCHDRGRCENGQCVCYEGFIGEDCGELRCPSDCHNRGLCV
NGQCVCHEGFTGDDCGQLRCPSDCRNRGLCVNGQCVCHEGYTGEDCGELRCPNDCHNRGR
CVEGRCECDNGFTGDDCGELACPNDCHGRGRCIDGRCVCHEGFMGEDCRERSCPNDCNNV
GRCVDGRCICEDGYIGDDCSDVSPPTELTVTNVTDKTVNLEWKHENLVNEYLVTYVPTSS
GGLDMQFTVPGNHTAATIHELEPGVEYFIRVFAILKNKKSIPVSARVATYLPAPEGLRFK
SVRETSVQVEWDPLNFSFDGWELVFHNMKKDDNGDITSSLKRPETSYMQPGLAPGQQYNV
SIHIVKNNTRGPGLSKVITTKLDAPSQVEAKDVTDTTALITWSKPLAEVEGVELTYGPKD
MPGDRTTIDLSEDENQYSIGNLRPHTEYEVTLISRRGDMESDPVKEVFVTDLDAPRNLKR
VSQTDNSITLEWKNSHANVDNYRIKFAPISGGDHVEITVPKGSQATTRATLTGLRPGTEY
GIGVTAVRNDRESAPATINAGTDLDNPKDLEVSDPTETTLSLRWRRPVAKFDRYRLVYTT
PSGKKSEVEIPVDSTSFLLRGLDPGTEYTISLLAEKGRHKSKPTTVKGSTEEEPELGKLS
VSQPGWDGFQLTWTAAEGAFESFVVQVQEPGSPEEPRSVTVPGALSSVNVTGLKANTPYS
ITLQGLTRGYRTKPLSLETTTGEQPGVAELMVSDITPESFNLSWTASNGDFDVFTIEIID
SNRLLEPMEFNLSGSSRTAHISGLSPSTDFIVYLSGVSRGFRTQAISAAATTVEELLLSK
LSVSNATSDSLSLTWEAQDKAFDHFILEVKNSDFPLDSLVLTVPGDSQHSVVTNLKAATN
YTVQLHGVIDGQGGQTLTAMATTEAEPQLGTLTLTNVTPDSFNLSWTTRDGPFATFVIKI
QDSLAAQEARELTVPGGTRSAHISGLTHHTAYDIHVQGTTRAGVPTEPLTAFVTTEAMPP
LENLTVSDMNPYGFTVSWMASENAFDNFLVVVVDSGKLLDPQEFLLSGAQRELKLKGLIT
GIGYEVLLYGFAKGHQTKPLSALAVTEAEPEVDNLLVSDATPDGFRLSWTADDGVFNSFV
LKIRDTKRKSDPLELIVPGHERTQDITGLKEGTEYEIELYGVGSGQRSQPINTVAFTVVG
SPKGISFSDITENAATVSWTPPHSRVENFRISYVPITGGTPNVVTVEGSKTRTKLVKLVP
GMDYNVSIISVKGFEESEPISGILKTALDSPSGLVVLNITDSEALATWQPAIAAVDNYVV
SYSSEEEPEVTQMVSGNTVEYDLKGLQPATEYTLSIHAQKDAQRSESLSTHFTTGLDAPR
DLSATEVQSEAAVINWRPPRAPVTGYLLIYESIDGRVKELILNPETTSYSLTELSPSTQY
TVKLQALKGDLRSKTIQTIFTTTGLLYPYPKDCSQALLNGEATSGLYTIYLNGDKAQPLQ
VFCDMGEDGGGWIVFLRRQNGKQDFYKNWNTYVAGFGDPKDEFWIGLENLHKITSQGQYE
LRVDLRDKGDSAYAVYERFSVGDAKSRYRLRVDGYSGTAGDSMTYHNGRSFSTFDKDHDS
AITNCALSYKGAFWYKNCHRVNLMGRYGDNSHSQGVNWFHWKGHEYSIQFAEMKLRPSSF
RNLEGRRKRA
NT seq
6153 nt
NT seq
+upstream
nt +downstream
nt
atgggactccccagccaggtcttggcctgtgccatccttgctttgctgtcccagcacgtc
actgggggactcatcaagagaatgatccggcagaagagggagactgggctgaacgtgacc
ttgccagaggataaccagcctgtggttttcaaccatgtctacaacatcaagctgcccatt
ggctccctctgctccgtggacctggacacagcgagcggcgatgccgatctgaaggcggaa
attgagcccgtgaagaattatgaggagcacacggtgaatgaggggaaccagattgtcttc
actcataagattaacattccccgccgggcttgtggttgtgcagctgccccagacattaag
gacctgctgagcagactagaggagctggaggggctggtctcctccctgcgggagcagtgt
gccagtggcgctggatgctgtcctaattcccaggcagcagaaggtcgcctggacaccaca
ccctactgcagtgggcacggaaactacagcatcgagatctgcggctgcgtctgcgagcct
ggctggaagggccccaactgcagccaggcctcgtgtccctccgactgcaacgaccagggc
aagtgcgtggacgggctgtgcgtgtgcttcgagggctacacgggcccggactgcagccag
gagctctgcgcccagggctgcggcgcccacgggcgctgcgtgggcgggcagtgcctgtgc
cacgagggctttgtgggtgacgactgcagcgtgcccctgtgcccccacaactgccacggc
cgcgggcgctgcgtggacagcgagtgcctgtgcgacgagggctacacgggcgaggactgc
agcgagctcatctgccccaacgactgcttcgaccgcgggcgctgcgtgaacggcacctgc
ttctgcgaggagggcttcaccggcgaggactgcggggagcccacctgccccaacgactgc
cacggcaacgggcgctgcgagaaggggctgtgcgtgtgccacgaaggctttgtgggcgac
gactgcagcgacaggaggtgccccaacgactgccacaaccgcgggcgctgcgtggccggg
cgctgcgtgtgccacgaggggtacctgggcgaggactgtgcggagctgcggtgtcccagt
gactgccacgaccgcgggcgctgtgagaacgggcagtgcgtgtgctacgaggggttcatc
ggggaggactgcggggagctgcggtgtcccagtgactgccacaaccgcgggctgtgcgtc
aacgggcagtgcgtgtgccacgagggcttcaccggggacgactgcggccagctgcggtgt
cccagtgactgccgcaaccgcgggctgtgcgtcaacgggcagtgcgtgtgccacgagggg
tacacgggcgaggactgcggggagctgcggtgtcccaatgactgccacaaccgcgggcgc
tgcgtggaagggcgctgcgagtgtgacaacggcttcactggggacgactgcggcgagctg
gcctgtcccaacgactgccacgggcgtgggcgctgcatcgatgggcgctgcgtgtgccat
gagggtttcatgggtgaggactgccgggaacgctcctgccccaatgactgcaacaacgtg
gggcgctgcgtggacgggcgctgcatctgcgaggatggctacatcggggatgactgctcc
gatgtgtctcctccaactgagctgactgtgaccaacgtgacggataaaactgtcaatctg
gagtggaagcacgagaacctcgtcaacgagtacctcgtcacctacgtccccaccagcagc
gggggcttggacatgcagttcaccgtgccaggaaaccacacagcagccaccatccatgag
ctggagccgggcgtggagtacttcatccgtgtctttgcaatccttaaaaacaagaagagt
attccagtcagcgccagggtagccacatatctgcctgctccagaaggtctgagattcaaa
tctgttcgggaaacatccgtgcaggtggagtgggaccctctgaacttttcttttgatggc
tgggagctggtcttccataatatgaaaaaggatgataatggtgacataaccagcagcttg
aaaaggccagagacatcctacatgcagccaggtttggcacctgggcagcagtacaatgtg
tccatccatatagtgaagaacaacaccagaggaccgggactgtccaaggtcatcaccaca
aagcttgatgctcccagccaggtggaggccaaagacgtcactgacaccacggctctcatc
acgtggtccaaacccttggctgaagttgagggcgtggagctcacttatggccccaaggac
atgccaggggacaggacaaccatcgacctctccgaagatgagaaccaatactccattggc
aacctgaggccacacacagagtatgaggtgacgctcatctctcgtcgaggggacatggaa
agcgaccctgtgaaggaagtctttgtcacagacctggatgctccaaggaacctgaagagg
gtgtcccagactgacaacagcatcaccctggagtggaagaacagccacgccaatgtcgat
aattaccgaattaagtttgcccctatctctggtggggaccacgtggagatcacagtgccc
aagggcagccaggccacaaccagagctacactcacaggtttgaggcctggaactgagtat
ggcattggagtgacagcagtgaggaacgacagggaaagtgctcctgctaccatcaatgct
ggcactgatcttgataaccccaaggacttggaagtcagcgatcccactgagaccaccttg
tcccttcgctggagaaggcccgtggccaagtttgaccgctaccgcctcgtttacaccact
ccctctgggaagaagagcgaggtggagatccctgtggacagcacctccttcctgctgcgg
gggctggatccgggcacggagtacaccatcagcctgctggcagagaagggcaggcacaaa
agcaaacccaccactgtcaagggttccacggaggaggaacctgagctggggaaattatca
gtatcgcagcctggctgggatggtttccagctcacctggacagcagccgagggggccttt
gagagctttgtcgttcaggtgcaggagccaggcagccccgaagagccccgcagtgtcaca
gtcccgggggcactgagctctgtgaatgtcaccggcctcaaggccaacactccttactcc
atcacccttcaggggctcactagaggctacaggaccaagcccctttctcttgagaccacc
acaggagagcagcccggcgttgctgagctaatggtttccgacatcacccccgaaagcttc
aacctctcctggacagcctccaacggggacttcgacgtctttaccattgaaattattgat
tctaacaggttgctggagcccatggagttcaacctctcaggcagctcaaggactgctcat
atctcagggctttctcccagcactgatttcattgtctacctctccggggtctctcgcggg
ttccgcacacaggcaatcagtgctgcagctaccacagtagaggaacttctccttagcaaa
ctcagtgtatcaaacgctacctcagacagcctgtcactcacctgggaggcacaggacaag
gcctttgaccatttcattctggaagtcaagaactctgacttccccttggactccctggtg
ctcacagtaccaggggactcccagcactctgtagtgaccaacctcaaagctgccactaat
tacacagtccagctccatggggtaattgatgggcaaggtgggcagaccttgacagccatg
gcaaccacagaggctgagccacagctgggcacgctcaccctcacaaacgttacccctgac
agcttcaacctgtcctggaccacccgagatgggccctttgccacgtttgttatcaaaatc
caagattccctggcggcacaggaagcccgggagctgacagtgccggggggcacccgcagc
gcccacatctcaggcctcacacatcacactgcctatgacattcatgtccagggcaccacc
agggcaggtgtccccacagagcccctcactgcttttgtcaccacagaggccatgccccca
ctggaaaacctaacagtgtctgatatgaacccctatgggttcacagtgtcctggatggca
tcggagaatgcctttgacaactttctagtagtcgtggtggattctggcaagctgctggac
ccacaggagttcctcctttcgggagcccagagagaactgaagcttaaaggcctaattact
ggcattggctatgaggttttgctttatgggtttgccaaggggcaccaaacaaagcccctg
agcgctctggctgttacagaagcagaacccgaggtcgacaaccttctggtttcagacgca
actccagatggattccgtctctcctggactgcagacgatggggttttcaacagttttgtt
ctaaaaatcagggacaccaaaaggaaatctgaccccctggagctgatagtgccaggccat
gagcgcacccaggatataacagggctgaaagagggcactgaatatgagattgagctctat
ggagttggcagtggacaacgttcccagcccataaacacagtagcattcacagtggttggc
tctcccaagggaatttctttctctgacatcacggaaaatgctgccacagtgagctggacc
ccccctcactcccgtgtggaaaacttccggatctcctacgtccccatcacgggaggtact
ccaaatgttgtcacagtcgaggggagcaagacgaggaccaagctggtgaagttggtccca
ggtatggactacaatgtcagcatcatctctgtgaaaggctttgaagaaagtgagcccatc
tctggcatcctgaaaacagctctggacagcccgtcaggcctggtagtgttgaacatcaca
gactctgaggctctggcaacctggcagccagcaattgctgctgtggacaactacgtggtg
tcctactcttctgaggaagagccagaagtgacccagatggtgtcagggaacacggtggag
tatgacctgaagggcctccagcctgccacggagtacacgctgagcatccacgcgcagaag
gacgcgcagaggagtgagagcctctccactcacttcaccacagggctggatgctccaagg
gatttgagtgccactgaggtgcagtcagaagcagctgtgataaactggaggcctccccgt
gctccagtcactggatacctcctcatctacgaatccattgatggcagagtcaaggaactc
atcctaaaccccgagacaacttcctacagcctgacagagctgagcccctccacgcagtac
acagtgaaactgcaggccctgaagggggacctgaggagcaaaaccattcagaccattttc
accaccactgggctcctctatccctaccccaaggactgctcccaggccctgctgaatgga
gaagccacctcagggctctacacaatttacctgaacggggacaaggctcagcctctgcaa
gtgttctgtgacatgggcgaggacgggggcggatggatcgtgttcctgaggcgtcagaat
ggaaagcaagatttctacaagaactggaatacttacgtggcaggttttggagatcctaag
gatgagttctggataggtctggagaacctgcacaaaatcacctctcagggccagtacgag
ctgcgggtggacctgagggacaagggggactcagcctacgccgtgtacgagcgcttcagc
gtgggggacgccaagagccgctaccgcctgcgggtggatggctacagcggcactgcaggt
gactccatgacctaccacaatggaaggtccttctccacctttgacaaggaccacgactct
gccatcaccaactgtgctctgtcatacaaaggagctttctggtacaagaactgtcaccga
gtcaacctgatgggcagatatggtgacaacagccacagtcagggcgtcaactggttccac
tggaagggccacgagtattccatccagtttgcagagatgaagctgagaccctccagcttc
cggaacctggaggggcggcggaagagagcgtag
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