Cinclus cinclus (white-throated dipper): 134051603
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Entry
134051603 CDS
T10813
Symbol
RXRA
Name
(RefSeq) retinoic acid receptor RXR-alpha
KO
K08524
retinoid X receptor alpha
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic03320
PPAR signaling pathway
ccic04148
Efferocytosis
ccic04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
134051603 (RXRA)
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
134051603 (RXRA)
03320 PPAR signaling pathway
134051603 (RXRA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ccic03000
]
134051603 (RXRA)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
ccic03310
]
134051603 (RXRA)
Transcription factors [BR:
ccic03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
134051603 (RXRA)
Nuclear receptors [BR:
ccic03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
134051603 (RXRA)
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Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
Nuc_recep-AF1
zf-C4
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
134051603
NCBI-ProteinID:
XP_062361435
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Position
19:complement(3387610..3418192)
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AA seq
439 aa
AA seq
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MATPSLHPSIGPGIGSSLGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPSTP
SLGFGTSSPQLNSPMNSVTSTEDIKPPLGLNGVLKVPAHPSGTMASFTKHICAICGDRSS
GKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKRE
AVQEERQRGKDRNENEVESTSSANEDMPVEKILEAELAVEPKTETYIEANMGLTPSSPND
PVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDG
ILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMLMDKTELGCLRAIVLFNPDSKGL
SNPAEVEALREKVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG
DTPIDTFLMEMLEAPHQMT
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atggccaccccgtccttgcacccgtccatcgggccgggcatcggttcctcgctgggctct
ccgggccagctgcactcgcccatcagcaccctgagctcgcccatcaatggcatgggaccc
cccttctctgtcatcagctcccccatgggcccacactcgatgtctgtcccctccacgccc
agcctgggattcggcaccagcagcccgcagctcaactcgcccatgaactccgtcaccagc
acagaagacatcaagccacccctggggctcaatggagtcctcaaagtgccagcacatccc
tcaggaacgatggcttccttcaccaagcacatatgtgccatctgtggggacagatcttca
ggtaaacattacggggtttacagctgtgagggctgcaaaggcttcttcaagcgcacggtg
aggaaggacctgacctacacgtgccgggacaacaaggactgcctgatcgacaaacgccag
cgcaaccgctgccagtactgccgctaccagaagtgtctggccatgggcatgaagagagaa
gccgtgcaggaggagaggcagcggggcaaggaccgcaacgagaacgaggtggagtccacg
agcagcgccaacgaggacatgcccgtggagaagatcctggaggctgaacttgctgtggag
ccaaagacagagacctacatcgaggcaaacatgggcctgacacccagctcgcccaacgat
cctgtgacaaacatctgccaggcagcagacaaacagctcttcaccctggtggagtgggcc
aagaggatcccccacttctctgagctgcccctggatgaccaggtcatcttgctcagagca
gggtggaacgagctcctaattgcctccttctcacaccgctccatagcagtgaaggatggg
atcctgctggccacggggctgcacgtgcaccgcaacagcgcccacagcgccggcgtcggg
gccatcttcgacagagtactgacagaactggtgtccaaaatgagggacatgctgatggac
aagacagagctgggctgcctgcgagccatcgtcctcttcaaccctgactccaaggggctc
tcgaacccggcggaggtggaggcgctgcgggagaaggtgtacgcgtcactagaggcttac
tgcaaacacaaataccccgaccagcccggcaggtttgccaagctcctgctccgcctccca
gccctgcggtccatcggcctgaaatgcctggagcacctcttcttcttcaagctaataggc
gacacacccatcgacaccttcttgatggaaatgctggaagcgccgcaccaaatgacttag
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