Cinclus cinclus (white-throated dipper): 134051625
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Entry
134051625 CDS
T10813
Symbol
SMARCC1
Name
(RefSeq) SWI/SNF complex subunit SMARCC1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
134051625 (SMARCC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccic03021
]
134051625 (SMARCC1)
03036 Chromosome and associated proteins [BR:
ccic03036
]
134051625 (SMARCC1)
Transcription machinery [BR:
ccic03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
134051625 (SMARCC1)
Chromosome and associated proteins [BR:
ccic03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
134051625 (SMARCC1)
PBAF complex
134051625 (SMARCC1)
GBAF(ncBAF) complex
134051625 (SMARCC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
SWIRM-assoc_2
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
Chromo
BRCT_2
BRCT
DUF919
SpeFL
Motif
Other DBs
NCBI-GeneID:
134051625
NCBI-ProteinID:
XP_062361491
LinkDB
All DBs
Position
1:complement(562539..629314)
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AA seq
976 aa
AA seq
DB search
MDFKAGGTLCHILGAAYKYKNEQGWRRFDLQNPSRMDRNVEMFMTIEKTLVQNNCLSRPT
IYLIPDMELKLANKLKDIVKRHQGTVTEEKSKATHHVYPSPTSMDDDEWLRPVMKKDKQV
LVHWGFFPDSYDTWVHANEIDAEIEDPPIPEKPWKVHAKWILDTDVFNEWMNEEDYEVDE
NRKSVSFRQRISMKNEEPVRSPERRDRKAAASTRKRKHSPSPPPTPVESRKKTGKKGQAA
LYGKRRGQKEEDEQEDLTKDMEDPTPVPNIEEVVLPKNVNPKKDSENTPVKGGTVADLDE
QDEETVATGGKEDEDPNKGDQSRSVDPGEDNVTEQTNHIIIPSYASWFDYNCIHVIERRA
LPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTGDVCAVMRVHAFLE
QWGLINYQVDPESRPMAMGPPPTPHFNVLADTPSGLMPLHIRTPQVPAAQQMLSFPEKNK
EKPTDLQNFGLRTDIYSKKTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVG
SRTQDECILHFLRLPIEDPYLENSDASLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRV
ASAAAKAALEEFSRVREEVPLELVEAHVKKVQEAARASGKVDPTYGLESSCIAGTGPDEP
EKMDGAEEEKMETEAEGQPAEKVENKAESETEEGEKVPEGENERNMEKEPEGEGAAEPKT
EEKEAEENKENVDGSKDKEAEAGKKKVEHEISEGNVATAAAAALASAATKAKHLAAVEER
KIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLTERQNFHMEQLKYA
ELRARQQMEQQHSQNPQQPHQHPSGPGMNPLGAPAHPGLLPHQQPPPYPMMHHQMPPPHP
PQPGQMPGPGSMMPGQPMPGRMMSAPPGMAPMSGNLLGPRVPLAAPNGMYPGPAQPPPAE
GVTPPPAGAPPASAAP
NT seq
2931 nt
NT seq
+upstream
nt +downstream
nt
atggatttcaaagctggaggtacattatgtcacattcttggtgctgcttacaaatataag
aatgaacagggctggaggaggtttgacctgcagaatccctcacggatggaccggaacgtg
gagatgttcatgaccattgagaaaacactggtgcagaacaactgtctgagcagaccaacc
atctacctcattcctgacatggagctgaagctggccaacaagctgaaggacattgtcaaa
cgtcaccagggaacagtcactgaggagaaatccaaggctacccaccatgtgtatccaagt
cctacctcaatggatgatgatgagtggttgagacctgtgatgaaaaaggacaagcaggtc
ctggtacattggggcttttttccagacagctatgacacctgggtccatgccaacgagatc
gatgcagaaattgaggatccccccattcctgagaagccctggaaggtccatgccaagtgg
attttggacactgatgtgttcaatgagtggatgaatgaagaggattatgaggtggatgag
aacaggaaatctgtgagttttcgccagaggatctccatgaagaatgaagagcccgtgcgc
agcccggagaggagggacaggaaagcagcagccagcacaaggaagaggaaacattcccct
tctccaccccccacccctgtggagtccaggaaaaagacagggaagaaaggacaagcagct
ctctatgggaaaaggaggggacagaaggaagaggatgaacaggaggacctcaccaaggac
atggaggatcccacccctgtacccaacatagaagaagtggtacttcccaaaaatgtgaac
ccaaagaaggacagtgagaacacacctgtgaaaggaggaaccgtggcagacctggatgag
caggatgaggagacagtggcgactggaggaaaggaggacgaggaccccaacaagggagac
cagagccgctccgttgacccgggggaggacaacgtcaccgagcagaccaaccacatcatc
atccccagctacgcctcgtggttcgactacaactgtatccacgtgatcgagcgtcgtgcg
cttcctgaattcttcaatgggaaaaacaaatccaagactccagaaatatacctggcctac
aggaacttcatgatcgacacgtaccggctgaacccacaggagtacctgaccagcactgcc
tgcaggaggaacctcactggggacgtctgtgctgtcatgagggtccatgccttcctggag
cagtgggggctcatcaactaccaggtggatcccgagagccgccccatggccatgggccct
cccccgaccccccacttcaacgtgctggctgacaccccctcggggctgatgcccctgcac
atccgcaccccccaggttccagctgcccagcagatgctgagctttcctgagaaaaacaag
gagaagccaactgacctgcagaactttggccttcgcacagacatctactccaaaaagact
ttggccaagagtaagggtgcaagtgctggcagagaatggacagagcaggagacactgctg
ctgttggaggccctggagatgtacaaggacgactggaacaaggtgtcggagcacgtgggc
agccgcacgcaggacgagtgcatcctgcacttcctgcgcctgcccatcgaggatccctac
ctggagaactcggacgcctcgctgggacccctggcctaccagcccgtgcccttcagccag
tcgggcaaccccgtcatgagcaccgtggccttcctggcctccgtggtggatccgcgcgtg
gcctcggccgctgccaaggctgccctggaggagttttcccgggtcagagaggaggtgccc
ctggagctggtggaagcccacgtgaagaaagtgcaggaagcagctcgagcctcggggaag
gtggatccaacctacggcctggagagcagctgcatcgccggcaccggccccgacgagccc
gagaagatggatggagctgaggaagagaagatggaaacagaggcagaggggcagccagca
gagaaggtggagaacaaagctgagagtgaaactgaggaaggagagaaggtcccagaaggg
gagaatgagaggaacatggagaaggagccagagggggaaggggctgcagagcccaagaca
gaggaaaaggaggcagaggagaacaaggagaacgtggatggcagcaaggacaaagaggct
gaggctgggaaaaagaaggtggagcacgagatctcagaaggaaacgtggccacagctgca
gctgctgccttggcctctgctgccaccaaggccaagcacctggcagctgtggaggagagg
aagatcaagtccctggtggcccttctggtggagactcagatgaagaagctggagatcaaa
cttcgccactttgaggagctggaaaccatcatggaccgggagaaagaggcactggagcag
cagaggcagcagctgctgacagagaggcagaacttccacatggagcagctcaagtacgcc
gagctcagggctcgccagcaaatggagcagcagcacagccagaacccccagcagccccac
cagcaccccagtgggcctggcatgaaccccctgggggcaccagcacacccaggcctgctg
ccccaccagcagcccccaccttaccccatgatgcaccaccagatgccacctcctcaccca
cctcagccaggtcagatgccagggcctggctccatgatgccagggcagcccatgccaggc
cggatgatgtctgcccctcccgggatggctccgatgtccgggaatctcctggggccgcgc
gtgccgctggcagctcccaacgggatgtatcccggcccggcgcagcccccgcctgcagaa
ggagtgaccccacccccagccggagccccgccggcctcagccgctccctaa
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