Cinclus cinclus (white-throated dipper): 134051880
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Entry
134051880 CDS
T10813
Symbol
RC3H2
Name
(RefSeq) roquin-2
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
ccic Cinclus cinclus (white-throated dipper)
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ccic03000
]
134051880 (RC3H2)
04121 Ubiquitin system [BR:
ccic04121
]
134051880 (RC3H2)
Transcription factors [BR:
ccic03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
134051880 (RC3H2)
Ubiquitin system [BR:
ccic04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
134051880 (RC3H2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-CCCH
zf-RING_UBOX
zf-RING_2
zf-CCCH_4
Prok-RING_4
zf-C3HC4
zf_CCCH_4
zf-CCCH_UNK
zf-C3HC4_4
zf-C3HC4_2
Xin
Motif
Other DBs
NCBI-GeneID:
134051880
NCBI-ProteinID:
XP_062361937
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All DBs
Position
19:1763768..1789939
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AA seq
1191 aa
AA seq
DB search
MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTD
IDVLPVNFALLQLVGAQVPDHQTVKLSNVGENKHYEVAKKCVEDLALYLKPLSGGKGVAS
LNQSALSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLSANL
WAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKTSIG
HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISPEQW
SSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRLRPHLELLANI
DPNPDAASPTWEQLENAMVAVKTVVHGLVDFIQNYSRKGHETPQPQPNSKYKTSMCRDLR
QQGGCPRGTNCTFAHSQEELEKYRLRNKKISSTVRTFPLLNKVGVNSTVSTTTGNVISVI
GSPEATGKMVPSTNGIANLETGVPQLIPRCADTSLRALENTKKGGKTGANGQNASGSPTE
SLPENKIGSPPKTPVSQAAVTSAGPPNIGTEVNSVPPKSSPFVPRVPVYPPHSDNVQYFQ
DPRTQLSYEVPQYPQTGYYPAPPTVPAGVAPCVPRFVRSNNVPESSLPPASVPYADHYST
FPPRDRLNSPYQPPPPQPYGPVPPVPSGMYAPVYDSRRIWRPQMYPRDDIIRSNSLPPMD
VMHSSVYQTSLRERYNSLDGYYSVACQPPNEQRTVPLPREPCGHLKTGYDEQLRRKPEQW
AQYHTQKTPLVSSTLPMATPSPTPPSPLFSVDFSTEFSESVSDLSGTKFEEDHLSHYSPW
SCGTIGSCINAIDSEPKDVIANSNAVLMDLDSGDVKRRVHLFETQRRAKEEDPIIPFSDG
PIISKWGAISRSSRTGYHTTDPIQATASQGSATKPISVSDYVPYVNAVDSRWSAYGSDSA
SSARYAERDRFIVTDLSAHRKHSSTGDLLSIELQQAKSNSLLLQREANALAMQQKWNSLD
EGSRLTLNLLSKEIDLRNGETDYPEDCADTKPDRDIELELSALDTDEPDGQGEQIEEILD
IQLGISSQEDQLLNGTTVENGHLLKQHQKESMEQKRQSLGEDLVILEEQKTILPVTSCFS
QPITTSVSNASCLPISTSVSVGSLILKTAHIMSEDKNDFLKPVANGRMVNS
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgcaggcagctcagtggacagaatttctgtcctgcccaatctgctacaatgag
tttgatgagaatgtgcacaaacccatcagcttaggttgctctcacaccgtgtgcaagacc
tgcctgaacaagctccatcgcaaggcatgtccttttgaccagactgccatcaacacggac
atcgatgtgcttcctgtgaactttgcactcctccagctggttggagcccaggtacctgat
catcagacagtaaagttgagtaatgtaggagagaacaaacattatgaagtagcaaagaaa
tgtgttgaggatttggcactctacttaaagccattaagtggaggaaaaggtgttgcaagc
ttgaatcagagtgcactgagccgtcccatgcagaggaagcttgtgacactggtgaattgt
cagctggtggaggaggagggtcgggtcagagccatgagggcagctcggtcactgggagag
agaactgtcacagaactcatcctacagcaccaaaatcctcagcagctttctgccaatctt
tgggctgctgtcagggcacgagggtgccagtttctaggaccagcaatgcaagaggaggca
ctgaaacttgtattactggcactggaagatggctctgcactctcaagaaaagttctggta
ctttttgttgtgcaaaggctggaaccaagatttcctcaggcctctaaaacaagcattggt
catgttgtgcagctactgtatagggcatcatgctttaaggtcactaaaagggatgaagat
tcttctctgatgcaacttaaagaagagttccggagttacgaggctttgcggagagagcac
gatgcccaaattgttcacattgccatggaagcaggacttagaatatcaccagaacagtgg
tcttcccttctttatggagacctggcacataaatcacacatgcaatccattattgacaag
cttcaatctccagaatcttttgctaagagtgtacaagaattgacaattgtcttgcagcgc
acgggggatcctgcaaacttaaataggctgaggcctcatttagagctcctggcaaacata
gatccaaatccagatgcagcatctccaacatgggagcagctggaaaatgcaatggtcgct
gtaaagactgtggtgcatggactggtggatttcattcagaattacagtaggaaaggccat
gaaactccacagcctcaaccaaatagcaaatacaaaacaagtatgtgccgagaccttcga
cagcaaggggggtgtccaagaggaacaaactgtacatttgctcattctcaggaagagctt
gagaaataccgcttgaggaacaaaaaaatcagctcaacagtgagaacattcccccttcta
aataaagttggagtaaacagcaccgtctcaaccacaacgggaaacgtgatctctgtcata
ggaagccctgaggcaacgggcaagatggtgccaagcactaatggaatagccaatctagaa
actggggttccccagctgatcccacgctgtgcagacacctccctgagagctctggagaac
accaagaagggagggaagactggagccaatggccagaatgcttctgggtcccccacagaa
tcacttcctgaaaataaaattggttctccacccaagactcctgtaagccaggcagcagtt
acctcagctggtcctcctaatattggaacagaagttaattctgtgcctccaaaatccagc
ccgtttgttcctagagtacctgtctaccctccacattctgataatgttcaatatttccaa
gatcccaggactcagctgtcatatgaagttccacagtacccacagacagggtattatcca
gcacctccaacagtaccagctggtgtggctccctgtgttcctcgctttgtgaggtccaat
aacgttccagaatcctccctcccacctgcttccgtgccatatgccgatcattacagcaca
tttccccctcgggatcgactgaattctccctaccagcctcctcctccgcagccgtacgga
ccagtccctcctgtcccctctggaatgtatgctccagtttatgacagcaggcgcatctgg
cgcccgcagatgtacccacgagatgatattatcaggagcaactctttacctcccatggat
gtgatgcactcatccgtctatcagacatcgttacgggagaggtacaactcactggatggg
tattactctgtggcttgtcaacctccaaacgagcagaggactgtgcctttaccaagggag
ccttgtggtcatttgaagactggttatgatgagcagctgagacggaagccagagcaatgg
gcacagtaccacacacagaaaactcctctggtatcatcaacccttcctatggcaacacca
tctccaacaccaccttctcctctcttcagtgtagattttagcacagagttctcagagagt
gtcagtgatttgagtggaactaaatttgaggaagaccatctctctcactattcaccgtgg
tcttgtggcactattggctcttgtataaatgctatcgactcagagcccaaggatgtgatt
gccaattccaatgccgtgttaatggatttggacagtggggatgttaaaaggagagtgcat
ttatttgaaacacagaggagggcaaaggaggaagatcctataatcccgttcagcgatgga
cccatcatctccaagtggggtgcaatctccaggtcatcccgcacaggttatcacacaaca
gacccaatccaggccactgcttcccaaggaagtgctactaagcccatcagtgtatcagat
tatgtcccttatgtcaatgctgtagactcaagatggagtgcctatggctcagattctgcc
tcctcagcacgttatgcggaacgggacaggttcatagttacagatttgtctgctcacaga
aagcattccagcactggagatctactgagtattgaattacagcaggccaaaagcaactcc
ttactccttcagagagaggcaaatgctcttgccatgcagcagaagtggaattctctagat
gaaggcagtcgtcttaccttaaaccttttaagcaaggaaattgatttgaggaatggtgag
actgattatcctgaagactgtgcggacacaaagccagaccgagacattgaattggagctg
tcagccctcgatacagatgaacctgatgggcaaggtgaacagatagaagagattctggac
atacagctagggattagctcccaagaggatcagctgctcaatgggacaaccgtagagaat
gggcatctgctgaagcagcaccagaaagaatccatggaacagaagagacaaagtttaggt
gaagaccttgtgattctggaggagcagaaaacaatcctgcccgtaacttcttgcttcagt
cagccgatcacaacatctgttagcaatgcaagctgcctgcccatcagcacatcagtcagt
gttggcagcctcattttgaaaactgctcacattatgtctgaggataaaaatgacttttta
aagcctgttgcaaatggcaggatggttaacagctga
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