Cinclus cinclus (white-throated dipper): 134051974
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Entry
134051974 CDS
T10813
Symbol
DDX5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134051974 (DDX5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccic03041
]
134051974 (DDX5)
03009 Ribosome biogenesis [BR:
ccic03009
]
134051974 (DDX5)
Enzymes [BR:
ccic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
134051974 (DDX5)
Spliceosome [BR:
ccic03041
]
Complex A
U1 snRNP components
U1 related factors
134051974 (DDX5)
Complex B
134051974 (DDX5)
Ribosome biogenesis [BR:
ccic03009
]
Eukaryotic type
Pre-60S particles
Helicases
134051974 (DDX5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
P68HR
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
BNIP2
Motif
Other DBs
NCBI-GeneID:
134051974
NCBI-ProteinID:
XP_062362100
LinkDB
All DBs
Position
20:complement(9118443..9130122)
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AA seq
607 aa
AA seq
DB search
MKAKFKSGEGYSVRFGAPRFGGSRGGPLSGKKFGNPGEKLTKKKWNLDELPKFEKNFYQE
HPDVVRRTAQEVEQYRASKEVTVRGHNCPKPIINFYEANFPANVMEVIQRQNFTEPTAIQ
AQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQ
QVQQVAAEYSRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNLRR
CTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYVHIN
IGALELSANHNILQIVDVCHDVEKDDKLIRLMEEIMSEKENKTIVFVETKRRCDDLTRKM
RRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNS
SEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVNDLISVLREANQAINPKLLQLIEDRGSG
RSRGDRRDRYSAGKRGGFSSFRERENFERTYGALGKRDFGAKTQNGAYSAQSFSNGTPFG
NGFAAAGMQAGFRAGGNPAGAYQNGYEQQYGSNIANMHNGMNQQQYAYPATGAAPMIGYP
MPTSYSQ
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgaaagccaaatttaaatctggggagggttattccgtgaggtttggagcccctcgtttt
ggaggaagtagaggtggacctctctctgggaagaaatttggaaaccctggagagaaactt
acaaaaaagaaatggaacttggatgagctgcccaaatttgagaagaacttctaccaagaa
catccggatgtagttagacgtactgcgcaagaagttgaacagtacagagcgagcaaagag
gtcacagttaggggccataactgtccaaaaccaatcatcaacttttatgaagcaaacttc
cctgcaaatgttatggaagtaattcagaggcagaacttcactgaaccaactgctattcaa
gcacaaggttggcctgttgcattgagtggattggatatggttggagtggcacagactgga
tcagggaaaacactctcttacttactgcctgccattgtgcatataaatcatcagccattc
ctggagcgaggagatgggcctatttgtcttgtgttggcaccaacccgtgaactggcccaa
caagtgcagcaggtagctgctgaatacagcagagcatgtcgcttgaagtccacgtgtatt
tatggaggtgctcctaagggaccacaaatccgtgacctggaaagaggtgtggaaatctgc
attgcaacacctggaagacttatagacttcctagaagctggaaagaccaatctcaggagg
tgtacttaccttgtccttgatgaagctgacaggatgcttgacatgggatttgaacctcag
atcagaaaaattgtggatcagattagacctgacaggcagactctgatgtggagtgccaca
tggcctaaggaagtgagacagctggctgaagatttcctgaaagaatatgtgcacatcaac
attggtgcactggaactgagtgcaaaccacaacattcttcagattgtggatgtgtgtcat
gatgtggagaaggatgacaagcttattcgtttgatggaagaaatcatgagcgagaaggaa
aacaaaacaattgtttttgtggaaaccaaaaggcgttgtgatgatcttaccagaaaaatg
aggagagatgggtggccagcgatgggtattcacggtgataaaagtcagcaggagcgggac
tgggttctaaatgaattcaaacatggaaaagcaccaatcctgattgctacagatgttgca
tccagaggtctagatgtggaagatgtgaaatttgtcatcaattatgactaccctaactcc
tcagaggactatatccaccgaattggacgaactgcccgcagtaccaaaacaggcacagca
tacacattctttactcctaacaatattaagcaagtaaatgacctcatctctgtgcttcgg
gaggctaatcaagccatcaaccccaaactgcttcagctgattgaagacagaggttcaggt
cgttcccgaggtgaccgacgtgacagatactctgcgggcaaaaggggtggatttagtagt
tttagagagagggagaactttgagagaacctatggtgcactaggcaagagagacttcgga
gcaaaaacccaaaacggggcttacagtgcccagagtttcagcaatggaactccctttggg
aacggcttcgcagctgcaggcatgcaggccggcttcagggccggcggtaaccctgcagga
gcgtaccagaacggctacgagcagcagtacggcagtaacattgccaacatgcacaacggc
atgaaccagcagcagtatgcctaccctgccactggtgctgctcctatgataggttacccc
atgcccacaagttattctcaataa
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