Cinclus cinclus (white-throated dipper): 134052039
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Entry
134052039 CDS
T10813
Symbol
GRIN2C
Name
(RefSeq) LOW QUALITY PROTEIN: glutamate receptor ionotropic, NMDA 2C
KO
K05211
glutamate receptor ionotropic, NMDA 2C
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic04020
Calcium signaling pathway
ccic04080
Neuroactive ligand-receptor interaction
ccic04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
134052039 (GRIN2C)
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
134052039 (GRIN2C)
04082 Neuroactive ligand signaling
134052039 (GRIN2C)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ccic04040
]
134052039 (GRIN2C)
Ion channels [BR:
ccic04040
]
Ligand-gated channels
Glutamate (ionotropic)
134052039 (GRIN2C)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lig_chan
Lig_chan-Glu_bd
ANF_receptor
NMDAR2_C
SBP_bac_3
Motif
Other DBs
NCBI-GeneID:
134052039
NCBI-ProteinID:
XP_062362212
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All DBs
Position
20:6382167..6397007
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AA seq
1547 aa
AA seq
DB search
MEERGEGKEGVLPPSVSGPGAGPGARRGGPVSGGRAACPPSPPFHRGWRPAPKLRRGGRT
HVLSFHRPRAPPSLHPRIPPPRSSRPSRPGSPAGPGPGGDGCRRSEVAETPAATGPPPVH
TRSAPAPSFLRSRPCLQPPLQSRRRRRRRRQGRAGTDGGRRSPPPAAAGPDPAPGGCPAA
GEALEEPSPRWDEPRRSRGACRHRAAAVPDTLVDMGRAPAHTLLLWMVLGCSAAFTDILL
PGPEEPVVNVAVVFGGTSYPLHIRSRLSPQSFLDMPLEIHPITVVVNNTNPSTLLTQICD
ILASHKIHGIVFEDNVGTEAVAQILDFISSQTQVPIISISGGSAVVLTPKEPGSAFLQLG
VSIEQQIQVIFKVLEEYDWGSFAVITSLYPGYNIFLDVIRSFTDASYFGWELQEVLTFEM
SQDQSSSRTQRLLRQIDAQVLIVYCSREEAEYLFSMAEQAGLVGPGYIWIVPSMTVGNME
VPPSSFPVGLISVVTESWKLSLRQKVRDGVAIIAMGAASFFRAHGYLPEVGRDCWTPIRA
TTTNTSFYRHLLNVTWEHRDFSFNEGGYLVRPTMVVITLNQHRLWEMVGKWEKGIIHMKY
PVWPRYGSFMQPVVDNRHLTVATLEERPFVIVENTDPSTGVCVRNTVPCRKQTNSSQSGD
GLVDPYTKLCCKGFCIDILKKLAKTVKFSYDLYLVTNGKHGKIVRGVWNGMIGEVYYKRA
DMAIGSLTINEERSEIVDFSVPFVETGISVMVARSNGTVSPSAFLEPYSPAVWVMMFVMC
LTVVAITVFMFEYFSPVGYNQNLTSGKRPGGPSFTIGKSIWLLWALVFNNSVPIENPKGT
TSKIMVLIWAFFAVIFLASYTANLAAFMIQEQYIDTVSGLSDRKFQRPQEQYPPFRFGTV
PNGSTERNIRSNYPDMHTHMVKYNQRSVEDALTSLKMGKLDAFIYDAAVLNYMAGKDEGC
KLVTIGSGKVFATTGYGIALQKDSRWKRAIDLALLQFLGDGDTQKLETVWLSGICQNEKN
EVMSSKLDIDNMAGVFYMLLVAMGLSLLVFAWEHLIYWKLRHSVPKSHKLDFLLAISRGI
YSCFNGVQTLSSPGRAPRPDVTASSAQANVLKMLQAAKEMVQTASVGGSLEQATRTIEDW
SNHSERLQTTFSLRTPQLVVQNSTGAHRGPPSSPHPAERLGRACAPKGAPLGLPLSQPIP
VDSRLHGEENWRGENEHPRLLHPLKFRGGCVGDEALTSFPHLLVKTSPGGDYGEQMLVGN
HIGAPLPPPTSPRDLPPPDIYREHKRPSGRGDRLQNNPLLQRAGTHGVSGTLPRLLSAAE
KKREVGSAFLPPSCSRGAFPKVTRTCRARGEPARPEAAVLEREKLSRWASSARVPGERGD
KRRPAGLRRCGAARPPARSDVPDLFPEAEAGYGCGSRCPQAAGRLPPHSPVTRLPSYREA
CRQNPRATATVPACAPHACMNSYANLPLYARHLWRGSPLPREHAGVHRCERGSGRWDSSC
RDCGRRGELAVLRAVGADRRDPLVARGVASPCAGGSWRRVSSLESEV
NT seq
4644 nt
NT seq
+upstream
nt +downstream
nt
atggaggagaggggtgaaggaaaggagggggtcttgcccccttctgtctccggccccggg
gccggccccggtgccaggagaggcgggccggtttctggaggaagggctgcctgtcccccg
tcccccccgttccaccggggctggcggccagccccgaagttgcggcgaggcgggaggaca
cacgtcctgtccttccaccgcccccgggctccccccagcctccatccccgcatccctccc
ccgcgctcctcccgaccgtcccgcccgggcagccccgccggtcccgggccggggggagat
ggctgccggcgctcggaggtcgccgagacacctgctgccaccggccccccccccgtgcac
acccgctccgctcccgctccctccttcctccgctcccgtccctgcctccagccgccgctg
cagagccgccgccgccgccgccgccgccgccaaggacgagccgggaccgacggcggccgc
cggagccccccgccagccgcggcggggcccgaccctgccccggggggctgccccgcagca
ggagaagctttggaagagccgagcccccggtgggacgagccccgccggagccgcggggca
tgtaggcaccgagcagcagcggtcccggacacgctggtggacatgggcagagcgccggca
cacactctgctactgtggatggtgctgggctgctcggctgccttcacggacatcctgctg
ccgggccctgaggagccagtggtcaacgtggccgtggtgtttgggggcacgtcctacccc
ctgcacatccgctcccgcctgagcccccagagcttcctggacatgcccctggagatccac
cccatcactgttgtcgtcaacaacaccaaccccagcaccctcctcacccagatctgcgac
atcctcgccagccacaagatccacggcatcgtctttgaagacaacgtgggcacggaggct
gtggcccagatccttgacttcatctcctcccagactcaggttcctatcatcagcatcagt
ggtgggtctgcagtggtcctgaccccaaaggagcccggatcagctttcctgcagttgggt
gtctccattgagcagcaaatccaggtgatcttcaaggtgttggaggaatacgactggggc
tcctttgctgtcatcaccagcctctacccaggctacaacatcttcctggatgtcatccgc
tccttcacggatgccagctactttggctgggagctgcaggaggtgctcacctttgagatg
agccaggaccagagcagctccaggacgcagcggctcctacgccagattgatgcccaggtc
ctcattgtttactgctcccgagaggaggctgagtatctcttctccatggcggagcaagcc
gggcttgtggggccaggatatatctggattgtgcccagcatgacagtgggcaacatggag
gtgccaccctcttccttcccagtgggcctcattagcgtggtgacggagagctggaagctg
agcctgcggcagaaggtgcgggatggcgtggccatcattgccatgggggcagccagcttc
ttccgtgcccatggctacctccccgaggtggggcgggactgctggacccccatcagggcc
accaccaccaacacaagcttctaccggcacctcctcaatgtgacatgggagcacagggac
ttctccttcaatgaaggtggatacctggtcaggccgaccatggtggtgatcacgctgaac
cagcaccggctctgggagatggtgggcaaatgggagaaaggcatcatccacatgaagtac
cccgtgtggccccgctatggctccttcatgcagcccgtggttgacaaccgccacctgaca
gtggccaccctggaggagagaccctttgtcattgtggagaacacggaccccagcacgggc
gtctgcgtgcgcaacaccgtgccctgccgcaagcagaccaactcctcccagagtggtgat
ggccttgtggatccctacaccaagctgtgctgcaaaggtttctgcattgacatcctgaag
aagctggccaagacggtgaagttctcctatgacctttacctagtgaccaatggcaaacat
ggcaagattgtccgtggggtctggaatggcatgattggtgaggtgtactacaagcgtgca
gacatggccatcggctccctcaccatcaatgaggagcggtctgagattgtggatttctcc
gtgccctttgtggagacaggcatcagtgtcatggtggcccggagcaacggcaccgtgtcc
ccctctgccttcctggagccttacagcccagccgtgtgggtcatgatgtttgtcatgtgc
ctcactgtggtggccatcaccgtcttcatgtttgagtatttcagccccgttggctacaac
cagaacctcaccagtggcaagaggccagggggtccctccttcaccattggcaagtccatc
tggctgctgtgggctctggtcttcaacaactcagtccccattgagaaccccaagggcacc
accagcaagatcatggtgctcatctgggccttctttgccgtcatcttcctcgccagctac
acagccaacctggctgccttcatgatccaggagcagtacattgacactgtgtcggggctg
agtgacaggaagttccagaggccacaggagcagtacccacccttccgctttggcactgtc
cccaatggcagcaccgagaggaacatccgcagcaactaccccgacatgcacacccacatg
gtgaagtacaaccagcgctctgtggaggatgccctcaccagcctcaaaatggggaagctg
gatgccttcatctacgacgcagcggtgctcaactacatggcgggcaaggacgagggctgc
aagctggtgaccattggcagtgggaaggtgtttgccaccacgggctacggcatcgccctg
cagaaggactcgcgctggaagcgagccattgacctggccctgctccagttcctgggagat
ggtgacacccagaagctggagacagtttggctgtcagggatctgccagaatgagaagaat
gaggtgatgagcagcaagctagacatcgacaacatggctggggttttctacatgctgctg
gtggccatggggctgagcctgctggtctttgcttgggagcacctcatctactggaagctg
cgtcattctgtccccaagtcccacaagcttgacttcctcctggccatcagcaggggcatc
tacagctgcttcaatggtgtgcagaccctgtcgagccccgggcgggcacccagacccgat
gtcactgccagctcagcccaggccaatgtgttgaaaatgctgcaggcggccaaagagatg
gtgcaaacggccagcgtgggcggctcgctggagcaggccacccgcaccattgaggactgg
agcaaccacagcgagcgtctccagaccaccttctccctgaggacaccgcagctcgtggtg
cagaacagcaccggcgcacaccgcgggcccccctccagcccgcaccccgccgagaggctg
gggagagcctgcgctcccaagggcgctcccctggggctgccgctgtcccagcccatccct
gtggactcccgtctgcacggggaggagaactggagaggggaaaacgagcacccccgcctg
ctgcaccccctgaagtttcggggtggttgtgtaggggatgaagccctcacaagtttcccc
cacctcctggtgaagacttccccaggaggggattatggggagcaaatgctggtggggaac
catatcggggctcccctcccgccccccacatccccgagggacctcccaccaccggacatc
tacagggagcacaaacggccgtcgggacggggggaccggctgcaaaacaaccccctgctc
cagagggccgggacgcacggggtctcagggactctgccccggctgctctcggcagcggag
aagaagcgggaggtgggcagcgccttcctgcctccatcctgctctcgcggagccttcccg
aaagtcaccaggacttgcagagccaggggcgagccggcgcggccggaggcggcggtgctg
gaacgggagaagctgagccgatgggcgagctcggccagggtgcccggggagcgcggcgac
aagcggcgacccgcggggctgcggcgctgcggggccgctcgcccacccgcccgctccgac
gtgcccgacctcttccccgaagccgaggccgggtacggctgcggctcccgttgcccacag
gccgctggccggctgccaccgcactcgcccgtgaccaggctgccatcctaccgggaggct
tgccggcaaaacccccgtgccaccgccaccgtgccggcgtgcgctccccacgcctgcatg
aactcctacgccaacctgcccctctacgcgagacacctctggcgggggtccccgctgccc
cgggagcacgccggggtgcaccgctgtgagcgggggtccgggcgctgggacagctcctgc
agagactgcgggaggcgcggggagctggccgtgctgcgggcggtgggggcggacaggagg
gacccgctggtggcccgcggggtggcgagtccctgcgccggcgggtcctggcggcgggtc
tccagcctggagtcggaggtgtga
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