KEGG   Cinclus cinclus (white-throated dipper): 134052058
Entry
134052058         CDS       T10813                                 
Symbol
ALYREF
Name
(RefSeq) THO complex subunit 4 isoform X1
  KO
K12881  THO complex subunit 4
Organism
ccic  Cinclus cinclus (white-throated dipper)
Pathway
ccic03013  Nucleocytoplasmic transport
ccic03015  mRNA surveillance pathway
ccic03040  Spliceosome
ccic05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:ccic00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    134052058 (ALYREF)
  09122 Translation
   03013 Nucleocytoplasmic transport
    134052058 (ALYREF)
   03015 mRNA surveillance pathway
    134052058 (ALYREF)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    134052058 (ALYREF)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccic03019]
    134052058 (ALYREF)
   03041 Spliceosome [BR:ccic03041]
    134052058 (ALYREF)
Messenger RNA biogenesis [BR:ccic03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     134052058 (ALYREF)
    TREX complex
     134052058 (ALYREF)
Spliceosome [BR:ccic03041]
 Complex C
  Other components
   EJC/TREX
    134052058 (ALYREF)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    134052058 (ALYREF)
SSDB
Motif
Pfam: RRM_1 FYTT
Other DBs
NCBI-GeneID: 134052058
NCBI-ProteinID: XP_062362240
LinkDB
Position
20:complement(12386314..12390514)
AA seq 334 aa
MADKMDMSLDDIIKLNRSQRGASRGGRGGRGRGGTARGGGPGRGGVGGGRAGGGPVRNRP
VMARGGGRNRPAPYSRPKQLPEKWQHDLFDSGFGAGAGVETGGKLLVSNLDFGVSDADIQ
ELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGESAWPMSTAC
FPSWSGAPCTSVSLPTCVSCRLRAALPPLRAPHEHPAGDVTDRHAAETSTECKQRWHDQK
PRGLGGIWRWRQQARDSWREQRERQRSWKNFQTTALCRRTRCTAGCLQCQDGHQLKRQRW
AQGRTPLLLHTPGRGCSCGYYYQGWDLFYFYVLG
NT seq 1005 nt   +upstreamnt  +downstreamnt
atggccgacaagatggacatgtccctggacgacatcattaagctgaaccggagccagcgt
ggggccagccggggtggccgaggcggccggggccggggcggcaccgcacgcgggggcggg
cccggccggggcggcgtgggcggcgggcgcgcgggcggcggccccgtgcggaaccggccg
gtgatggcccggggcggcggcaggaaccggcccgcgccctacagccggccaaagcaactc
cccgagaagtggcagcacgacctgttcgacagcggcttcggggcgggggccggcgtggag
accggtggaaaattgctcgtctccaacctggacttcggcgtttcggatgcggacatccag
gagctctttgcggagtttgggaccttgaagaaggcagctgtgcactatgacagatctggt
cgcagtctaggaacggcagacgtgcattttgagagaaaggctgatgctctgaaggcaatg
aagcagtacaatggggtgcccttggatggtgagtctgcatggcccatgtccacggcctgc
ttccctagctggagtggagcaccctgcacatccgtgtccctccccacctgcgtgtcctgc
aggcttagggctgctctccctcccctcagggcgccccatgaacatccagctggtgacgtc
acagatcgacacgcagcggagaccagcacagagtgtaaacagaggtggcatgaccagaaa
ccgcggggtctcggggggatttggaggtggaggcaacaggcgagggactcgtggcgggaa
cagagggagaggcagaggagctggaagaacttccaaacaacagctctctgcagaagaact
agatgcacagctggatgcttacaatgccaggatggacaccagctaaagcggcagcggtgg
gcgcagggaaggactccactcttgctccacactcccggcaggggctgcagctgtggctac
tactaccaaggatgggatttgttttacttttatgttctgggatag

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