| Entry |
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| Symbol |
TNRC6C
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| Name |
(RefSeq) trinucleotide repeat-containing gene 6C protein isoform X1
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| KO |
| K18412 | trinucleotide repeat-containing gene 6 protein |
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| Organism |
ccic Cinclus cinclus (white-throated dipper)
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| Brite |
KEGG Orthology (KO) [BR:ccic00001]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:ccic03019]
134052190 (TNRC6C)
03036 Chromosome and associated proteins [BR:ccic03036]
134052190 (TNRC6C)
Messenger RNA biogenesis [BR:ccic03019]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
134052190 (TNRC6C)
Chromosome and associated proteins [BR:ccic03036]
Eukaryotic type
Gene silencing
piRNA pathway
134052190 (TNRC6C)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
20:4785564..4885389
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| AA seq |
1959 aa
MEEKKKKKQEEKKKKEGAQKKAAEQKTKVPEPIKTSLSQPQPAGTGTSTSTSTLTNSSNG
KRASANGQQPAASRYLPREVPPRFRQQEQKQLLKRGQPLPSGALSAPGPAPGTAAAAASP
PPPPPPQQHPSKAQPDLSHSGLGDHYENSHWGQQPAFRSEGNCSWDKVIIDRTDKEAWPS
ITGAETESASECTTDTDSASNCGSENSSMATGSAQGNFTGHTKKTNGNNGANGALVQSTS
NQSALGAGGANGNGSSARVWGVAAGSSSGLAHCSASGGDGKMDNMMGDGRSQNCWGASNS
NAGINLNLNPNANPAAWPVLGHEGTVGAGNPSSICSPVSAIGQNMGNQNGNPTGTLGAWG
NLLPQESTEPQTSTSQNVSFSVQPQNLNTDGPNNTNPMNSSPNPINAMQTNGLPNWGMAV
GMGAIIPPHLQGLPGANGTAVSQVSGGGGEGMGSSVWGMSPGNPATGNSNSGFSQGNGDT
VNSALSAKQNGSSSAVQKEGNGANAWDSGPPSGPGVLAWGRGGGGVGSVHSGAWGHPNRS
ASNGVNGEWGKPPNQHSNSDINGKGSTGWDSSSVTGPNPAMQQGNEQMNSWAKAAASGTT
ASEGSNDSGGSQNEVSTGREGAGEGRRRDKGMIDQGQVQLPRNDLDPRVLSNTGWGQTPV
KQNTAWEFEESPRSERKNDNGTEAWGCAATQSSNSGGKNDGSIMNSTNTSSVSGWVNSPP
AAVPTNTGWGDNNNKAPNGPGGWGESASSTTVNNAAAAKSGHAWSGTANQEDKSPTWGEP
QKPKSQNWGDGQKSNPSWTSGGGDWTDSSSVPGHLGDGKKNGSGWDSDNRSGSGWNDSTK
SGTSGWGNGTNSKANTGTSWGESLKPGPQQNWANKPQDNNVSNWGGAASVKQTGSGWVGG
PVPAKQKENCEATGWEEPSPPSIRRKMEIDDGTSAWGDPNYNNNKTVNMWDRNNPIIQSS
TTTNTTTTSTIINTNMVEPQPSHQSSAQPNRSPLLGPGWGEMPAVHTKSEASWGEPSSPS
AAVDNGTSAWGKPPSSGTGWGENPAEPAGTYGRTNTPAAAPALCKPASKSMQEGWGSGGD
EVNLSTSQWEDEEGDMWNNTASQESSSSCNSWGNAPKKGLQKPKTNPRLSLGTFWRTERK
RLLKDFVIEKLHRDLLKGMKTSSKQDEAWIMNRLIKQLTDMGFPREPAEEALKSNSMNLD
QAMSALLEKKVEMDKRGMGVTDYNGMVTKPLGCRPPPISKESSMDRPTFLDKDGGLVEEP
TTSPFLPSPSLKLPLSNSALPNQTLGGIASGLGMQNLNSSRQIPSGNLGMFGNSGAAQAR
TMQQPQQPPVQPLNSSQPSLRAQVPQFLSPQVQAQLLQFAAKNIGLSPAQLTSPINNPQH
MTMLNQLYQLQLAYQRLQIQQQMLQAQRNVSGPMRQQEQQVARTINNMQQQIQQHQRQLA
QALLMKQQPPPPHLSLHPSAGKSAMDSFSPHPQAPGLPDLQTKEQQSSPNTFAPYPLAGL
NPNMNVNNMDITGGLSVKDTSQSQSRLPQWTHPNSMDNLSSAASSLDQNSSKHGAIPGGL
SIGPPGKSSLDDSYGRYDLIQNSESPASPPVAVPHSWSRAKSDSDKISNGSSINWPPEFH
PGVPWKGLQNIDPENDPDVTPGSVPTGPTINTTIQDVNRYLLKSGGSSPTSSQNATLPSS
SAWPLSASGYSSSFSSIASAPSIAGKLSDIKSTWSSGPISHTQASLSHELWKVPRNTTAP
TRPPPGLTNTKPSSTWGASPLGWTSSYSSGSAWSTDSSGRTSSWLVLRNLTPQIDGSTLR
TLCLQHGPLITFHLNLTQGNAVVRYSSKEEAAKAQKSLHMCVLGNTTILAEFAGEEEVNR
FLAQGQALPPTSSWQSNTGSTPSRLGSSGSSHGLVRPDTGHWNPPCLGGKGSSDLLWGGV
PQYSSSLWGPPSADDGRVIGSPTPLNTLLPGDLLSGESI |
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| NT seq |
5880 nt +upstreamnt +downstreamnt
atggaagaaaagaaaaagaaaaagcaggaagaaaagaaaaagaaggaaggtgctcagaaa
aaggctgctgaacaaaaaaccaaagtgccagaacctattaagaccagtttaagccagccc
caacctgccggtaccggtaccagtacttccaccagcactctcaccaacagcagcaatggc
aagcgcgcgtctgctaacgggcagcagcctgcggcgtcccgatacctgccccgagaggtg
cctccccgcttccgccagcaggaacagaagcagctcctaaagagggggcagccactgccc
agcggggctctgagcgcccccggcccggcgccgggcacggcagcagcagcagccagccct
cctcctcctcctcctcctcagcagcatcccagcaaggcccagccagatctcagccacagt
ggattgggagaccattatgagaattcccactggggacagcagcccgctttcaggagtgaa
ggcaactgcagctgggataaagtgataatagacaggactgacaaggaagcgtggccttcc
attaccggagctgagactgagtctgcctcagaatgtactacagacactgactctgcctcc
aactgtggctcagagaacagtagcatggctacagggagtgcccaaggcaacttcactgga
catacaaagaaaactaatggcaataatggcgccaacggagcactcgtccaaagcacttct
aaccagagtgcccttggagctggtggagcaaacggcaacggcagctcggccagggtgtgg
ggggtggctgcaggctccagctctggcctagctcactgctctgccagtggtggggatgga
aagatggacaacatgatgggagacggtagaagtcagaactgctggggtgcttccaactcg
aatgctggcattaatcttaaccttaaccctaatgccaatccagctgcctggcctgtactt
ggacatgaaggaactgtgggagcaggcaacccttccagtatttgcagtccagtcagtgcc
ataggtcagaacatgggcaaccagaatgggaacccaacaggcaccttaggtgcttgggga
aacttgctgccgcaagagagcacagaaccacaaacgtccacttctcagaatgtgtctttc
agcgtacaacctcagaaccttaacactgatggaccaaataacactaaccccatgaactct
tcaccaaaccctatcaatgcaatgcagacaaacggactgccgaactgggggatggccgtg
ggcatgggggccatcatcccgccccacctgcaaggccttcctggtgctaacggaacagcg
gtttctcaagtcagcgggggcggtggtgaaggaatgggcagttcagtatgggggatgtcc
ccaggtaatcctgccacaggaaacagcaattctgggttcagtcaggggaatggcgacact
gtgaactcagcattaagtgctaaacaaaacggatccagcagtgctgtgcaaaaggaagga
aacggagcgaacgcgtgggactcggggcctccctctggccccggggtcctggcgtggggc
aggggcggtggcggggttggcagtgtgcattctggagcctggggccaccccaaccgcagc
gccagcaacggtgtcaacggggagtggggcaagcccccaaaccagcattccaatagcgac
atcaatgggaaaggatcaacagggtgggatagctcgagtgttaccggtccgaatcctgcc
atgcagcagggcaatgaacaaatgaactcttgggccaaagctgcagcatctggcaccacg
gctagtgaaggaagcaatgacagcggtgggagtcaaaatgaagtcagtaccgggagggag
ggggctggagagggaaggaggagagacaaagggatgatagaccaagggcaagttcagttg
ccaagaaatgaccttgaccccagggtcctgtccaatacagggtggggacagacccctgtg
aagcaaaacactgcctgggaatttgaagagtccccaaggtctgaacggaagaatgacaat
ggaactgaggcctggggttgtgcagctactcaatcttcaaactcaggggggaagaacgat
gggtccatcatgaacagtacaaatacctcttcagtatctgggtgggtcaactctccaccg
gcagctgttccaacaaatacaggttggggagacaataacaacaaagcaccaaatggccca
ggggggtggggagagtcagcaagctctactactgttaataatgctgctgctgccaaaagc
ggccacgcttggagtgggaccgcaaatcaggaggacaaatcacctacctggggtgaacct
cagaaacccaaatctcaaaactggggagatggacagaaatcaaatccaagctggacttca
ggaggtggagactggacagattcatcatctgttcctggacacttgggtgacgggaagaag
aatggatctggatgggattctgataatagatcggggtctggctggaatgattccacaaag
tctgggaccagtgggtgggggaatggcacaaacagcaaggctaatacaggtacaagttgg
ggggaatctttaaagccaggcccccaacaaaattgggctaataaaccccaggacaacaat
gtgagtaactggggaggagctgcttctgtaaaacagacggggtcagggtgggttggtggg
ccagtgccagccaaacaaaaagagaactgtgaggcaactggctgggaagagccatctcca
ccgtccattcgccgcaagatggaaatcgatgacggtacctcagcttggggcgacccaaat
tacaacaacaacaagactgtaaacatgtgggatagaaataatcctataattcagagcagt
accacaaccaacaccaccaccactagcaccattatcaacaccaacatggttgaacctcag
ccatcgcaccagtcaagtgcccagccgaaccggtccccgctgctcggcccaggctgggga
gagatgcctgctgtccacaccaagagcgaagcttcctggggagagccctcctccccttct
gctgcagttgacaatggcacttcggcgtgggggaagccccccagcagtgggaccgggtgg
ggagagaatcctgccgagccagcagggacctatggaagaacaaacactccagctgctgcc
ccagcactgtgcaaaccagcttcaaaatctatgcaagaaggctggggcagtggtggggat
gaagtgaatctcagtactagtcagtgggaagatgaagaaggagatatgtggaataatact
gcttcacaagagagcagctcctcctgtaattcctgggggaatgccccgaagaaaggactt
caaaagcccaaaacaaatccgcgcttgtcccttggtactttctggagaactgaaaggaag
agacttcttaaggattttgtgatagaaaagctgcacagagatcttttaaagggcatgaag
acatctagcaagcaggatgaggcctggatcatgaaccgtctgataaaacagctcacagac
atgggcttccctagagagccagcagaagaggccttgaagagcaacagtatgaatctcgat
caggccatgagtgctctgctggaaaagaaggtggaaatggacaagcgtggaatgggagtg
accgactataacggaatggtcaccaaaccccttggctgccgcccaccaccaatctccaaa
gagtcttccatggaccgccccaccttcctcgacaaggatggcggcctagtggaagagccc
actacttcaccatttttgccttcaccaagcctgaagctccccctttcaaacagtgcactc
cctaatcagaccctgggcgggattgcctcagggctgggcatgcaaaacttgaattcttct
agacagataccgagtggcaatctgggtatgtttggcaatagcggagcagcacaagccagg
accatgcaacagccgcagcaaccgccagtgcaacctcttaattcatcccagcctagtctt
cgtgctcaagtgcctcagtttctatcccctcaggttcaagcacagcttttgcagtttgca
gcaaaaaacattggtctcagccctgcacagttaacctcgccaattaataatcctcagcat
atgacgatgttgaaccagctctatcagctgcagctggcataccaacgtttacaaatccag
cagcagatgttacaggctcagcgcaacgtttccggacccatgagacaacaggagcagcaa
gttgcacgtacaatcaataacatgcagcagcagatccagcagcaccagcgccagctggcc
caggccctgcttatgaagcagcagcctccccctccacatctatctttgcacccctctgca
ggcaaatcagccatggatagcttttcaccccatccccaggctcccggccttcctgacctg
cagaccaaagagcagcagtcttcaccgaacacctttgctccttaccctcttgctggactg
aacccgaacatgaatgtaaataacatggacattactggtggtttgtcagtgaaggacact
tctcagtcccagtctcgccttcctcagtggacacaccccaactcaatggataatctgtct
agtgctgcttcttctcttgaccagaactccagcaagcacggtgctatccctggaggtttg
agtattggtcctccaggaaagtcctcccttgatgactcctacggccgctatgatctgatc
cagaacagtgagtctcctgccagcccacctgtagctgttcctcacagctggtcacgtgcc
aaatctgatagtgataagatttccaatggctccagcataaactggccaccagagtttcac
ccaggagtgccatggaaaggactgcagaatattgatcctgaaaatgaccccgatgttact
cctggcagtgttccaactgggcctaccataaacaccacgatccaagatgtgaatcgctat
ctgctcaagagtggagggtcatccccaacatcatctcagaatgccacgctgccttcatcg
agtgcctggccgcttagtgcctccggctacagtagctctttcagcagcattgcatctgca
cctagcattgcaggtaaactgtcagacatcaagtccacgtggtcctctggcccgatctct
cacacgcaagcctctctgtcccacgagctctggaaggtgcccagaaacactacagctcca
acaagacctcctccaggcttaaccaacaccaagccatcctccacgtggggtgccagtccc
ctgggctggaccagctcttactcctctggttctgcatggagtactgacagctcagggaga
acaagcagctggctggttcttcggaacctcaccccccagatcgatggttccacactgcgg
accctgtgtttgcagcacggccctctcatcacattccacttgaacctgacccaagggaat
gctgtggtccgatacagctccaaggaggaagcagccaaggcccagaagtctctgcacatg
tgtgtcctgggcaacaccacgatcctggcggagtttgctggtgaggaagaagtgaatcgt
ttcctggcgcaggggcaggcgctgccgcccacctccagctggcagtccaacactggatcc
accccgagccgcctgggctcctcgggcagctcccacgggctggtgcgccccgacaccggc
cactggaaccccccgtgcctggggggcaagggcagcagtgacctgctctgggggggggtg
ccccaatactccagcagcctttggggtccccccagcgccgacgacggcagagtcatcggg
agccccacgcccctcaacaccctcctgccgggggatctgctcagcggggagtccatctag |
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