Cinclus cinclus (white-throated dipper): 134052296
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Entry
134052296 CDS
T10813
Symbol
COL6A3
Name
(RefSeq) collagen alpha-3(VI) chain
KO
K06238
collagen type VI alpha
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic04510
Focal adhesion
ccic04512
ECM-receptor interaction
ccic04518
Integrin signaling
ccic04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
134052296 (COL6A3)
04518 Integrin signaling
134052296 (COL6A3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
134052296 (COL6A3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
134052296 (COL6A3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ccic04147
]
134052296 (COL6A3)
00536 Glycosaminoglycan binding proteins [BR:
ccic00536
]
134052296 (COL6A3)
Exosome [BR:
ccic04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
134052296 (COL6A3)
Glycosaminoglycan binding proteins [BR:
ccic00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
134052296 (COL6A3)
Hyaluronan
Extracellular matrix or blood plasma proteins
134052296 (COL6A3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
VWA_3
Kunitz_BPTI
fn3
Ig_J
Motif
Other DBs
NCBI-GeneID:
134052296
NCBI-ProteinID:
XP_062362646
LinkDB
All DBs
Position
21:7446088..7494974
Genome browser
AA seq
3139 aa
AA seq
DB search
MRKHRHFPLVAMFCLLLSGFGSVGAQQQAAVKTVAVADIIFLVDSSWSVGKEHFQLIREF
LYDVVKALDVGGNDFRFALVQFSGDPHTEFQLNTYPSIQDVLSHIANMTYVGGGTEPGKG
LEYLMEKHLTKAAGSRASEGVPQVIVVLADGQPRDDVALPSSVLNSARVKLFAVGVQDTV
EGELQEVASAPLDTHRFNLENFTALHGIVGDLVASVRSSMTPEKAGAKGLVKDITAQESA
DLIFLIDGSNNIGGVNFPAIRDFLVNLIEILRVGAQQIHIGVVQYSDQPRTEFALNSYST
KADVLDAVKALGFRGGEEANTGAALEFVVENLFTQAGGSRIEEAVPQILVLISGGESSDD
IREGLLAVKQAGIFSFSIGVLNADSAELQQIATDGSFAYTALDIRNLDALQELILPNIVG
VAQRLILLAAPTIVTEVIEVNKKDIVFLIDGSTALGTAPFNAIRDFVAKIVQRLEVGPDL
IQVAVAQYADTVKPEFYFNTHQTRKDVMANVRKMKLMGGTTLNTGSALDFVRNNFFTNAA
GCRMEEGVLPMLVLITGGKSRDAVDQAAEEMKRNRIVTLAVGSRNADLAELQQIAHERDF
VFNPNDFRLQFMQAILPEVLSPIRTLSGGVIVPEPPAVQVTKRDIIFLLDGSLNVGNANF
PYVRDFVATLVNYLDVGSDKIRVGLVQFSDTPKTEFSLYSYQTKSDIIQRLGQLRPKGGS
VLNTGSALNFVLLNHFTEAGGSRINEQVPQVLVLVTAGSSADPFLQVSNELARAGVLTFA
VGVRNADKAELEKIAFNPRMVYFMDDFSALAALPQELNKPITTYVSGGVEEVPLAPTESK
KDVLFLIDGSTNLLGSFPPVRDFVHKVISDLNVGSDATRVAVAQFSDTVQVEFDFAEYSS
KQDMLIKVKRMKLKSGKQLNIGAALDEAIRRLFVREAGSRIEEGVPQFLILLVAGKSADD
VEEPSDVLKHAGVVTFGIKAKNADPTELQRIVYAPQFLLNVESLQRISELQPNIVNLLRT
VQLQPTVVERGEKKDVVFLIDGSDGVRRGFPLLKTFVQRVVESLDVGRDKVRVAVAQYSN
TIQPEFLLDTYEDKADLISAIQQLKLMGGSPLNTGAALDYLIKNVFTVSSGSRIAEGVPQ
FLILLTADRSQDDVRRPSVVLKTSGTVPFGIGIGNADLTELQTISFLPDFAISVPDFSQL
DSVQQVVSNRVIRLTKQEIESIAPDLVFTSPSPAGVKRDVVFLVDGSRYAAQEFYLVRDL
IGRIVSNLDVGIDTTRISVVQFSEHPHVEFLLNTHSTKDEVQSAVRQLRSKGGQLVNVGE
ALEFVAKTIFTRPSGSRIEEGVPQFLVILSSRKSDDDFEYPSLQVKQVGVAPMMIAKNVD
TEEMIQISLSPEYVFQVSSFQELPSLEQKLLTPIETLTVDQIRRLLGDVQPPIDVSGDEK
DIVFLIDSSDSVRPDGLAHIRDFVSRIVQQLEVGPNKVRIGVVQFSNGVFPEFYLKTHKS
KNAVLEAIRRLRLRGGSPLNAGKALDFVVKNYFIKSAGSRIEDGVPQHLVVILGDRSQDD
VDRPARVITSTNIKPLGVGARNVDRDQLQVITNDPGRVLVVQDFTGLSTLEKRVQNILDE
LPIPTTDSPGPFLPGDEGKKQADIVFLLDGSINLGRDNFQEVLQFVYSVVDAIYRDGDSI
QVGLAQYNSDVTDEFFLKDHSTKAQILDAINKVIYKGGRVANTGAAIKHIQERHFVKEAG
SRIDQRVPQIAFIVTGGKSTDDGPRASLEITQKGVKVFAVGVKNIDLKEVSLLASESAMS
FRASTAQELSELNEQVLVTLEAAMEERLCPGATDVTRDCDLDVIIGFDVSDVGPGQNIFS
SQRGLESRVESVLNRITQMQKISCTGNQAPNVRVAIMAQAQGGPVEGLDFSEYRPELLEK
FLDMRTRGAYYLRADTLRSYLSKFRSSPAGSTKVIIHFTDGADEPIDQLEAASSTLHSEG
VNALIFVGLDRVTNFDRLMQLEFGRGFTYNRPLRVNLLDLDFELAEQLDNIAERTCCKVP
CKCSGQRGDRGVPGPIGPKGVTGDLGYGGYPGDEGGPGERGPPGVNGTQGFQGCPGHRGT
KGSRGFPGEKGELGEMGLDGIDGEEGDKGLPGSSGEKGYSGRRGDKGVKGERGERGDRGL
RGDPGDSGADNTQRGPRGQKGEIGPMGDPGPAGLEGQEGGVGRRGMPGRRGPIGVKGTKG
APGQAGPAGEQGMRGPQGPPGPVGTPGIRGEQGVPGPRAGSGPPGPPGERGRTGPLGRKG
EPGNPGPKGPDGQPGPRGEMGDDGRDGIGGPGPKGRKGERGFVGYAGPKGGPGDRGVAGG
PGPKGNRGRRGNAGVPGAPGQKGEIGYPGPSGLKGEKGESRDQCALVRNIKDKCPCCYGP
KECPVFPTELAFAIDTSSGVVRDVFNRMKQTVLRVVNNLTIAESNCPRGARVALVTYNNE
VTTEIRFADARKKSSLLQQIQNFQATLTTKPRSLETAMSFVARNTFKRARSGFLMRKVAV
FFSNGDTRASPQLNDAVLKLYDAGVVPVFLTSRQDAVLARALEINNTAVGHAIVLPTSGG
QLNQTIQRLLTCHICLDVCDPDPSCGASGQRPTFRDRRAAPTDVDTDIAFILDSSESTTP
LQFSEMKKYISHIVTNLEISSEPKISQHHARVAVLQQAPYEHEINSSFPPVKTEFSLTDY
VSKEKIINYLHNQMTQLHGTSALGSAIEHTIAHVFESAPSPRDLKVIVLMMTGKVNKKEL
EHLQRVVVNAKCKGYFFVVLGIGRKVNAKNIYSLASEPNDVFFKLVDKSGELHEEPLLRF
GTLLPSFIRSEFPFYLSPEIRTQCEWLQNGQQIQSQHPVLTGQKAVFMAPNATVSRTFTA
STTVSATIDPAASAQARSTPASTTAQGTATETTPASSVVQGNATAEGAASATTHTKASGR
ATTNANATTTVAGGRRRHSAKTHDIQITDVTESSARLRWASPEPHNTFDVTVTLAHDHSL
VQRQNLTGTEHVIRGLRSGQKYVVVITGFQKSQPKVTYTGSFSTKTPAQPQVSLANMMLN
TEPLEGPESVMDICRLQKDEGTCRSFVLKWYYDPETKSCARFWYGGCGGNENRFNTQKEC
EKLCIPGAINPGVVTTIGT
NT seq
9420 nt
NT seq
+upstream
nt +downstream
nt
atgaggaaacatcgacattttcccctcgtggcaatgttttgcctcctgctctcaggcttt
ggctcggttggtgctcagcagcaagcagctgtcaaaaccgttgctgtggctgatataata
tttctagtggattcctcctggagcgttgggaaggaacacttccaactcattcgagagttt
ctgtatgatgttgtaaaagctttagatgtgggaggaaatgattttcgctttgccctggtc
cagttcagcggagacccccacacagagttccagttaaacacctacccctccatccaggac
gtcctgtcccatattgccaacatgacttacgtggggggaggcaccgagcctggaaaagga
ttagagtacttaatggagaagcacctcactaaagctgctggaagcagagccagtgaaggc
gtgccccaggttattgtagtgctggcagacggacagccccgcgatgatgtggctctgccc
tcatctgtccttaactcggcccgtgtaaagctgtttgcggtcggcgttcaggacacagtg
gaaggggaattgcaggaagtagcaagcgcacccctcgatacgcaccgcttcaacctagag
aattttactgctctccacggcatagttggagacttagtggcgagtgtccgctcctccatg
actccagaaaaggctggagccaaaggactggtaaaagacatcacagctcaagagtccgct
gaccttattttccttattgacggatcaaacaacatcggaggtgtcaattttccagccata
cgcgatttccttgtaaatttgattgaaatcctcagagttggagctcagcagatacacatt
ggggtggtgcagtatagtgatcaacccagaaccgagttcgctttgaacagctactccaca
aaagcggatgtcctggatgccgtgaaggcactcggcttccgcgggggcgaggaagcgaac
accggtgcggcactggagtttgtggtggagaacctcttcacccaggcgggaggcagcagg
atagaggaagcggtgcctcagattttagtgctgataagtggtggagagtctagtgatgat
atccgagagggcttgttagcggtgaagcaagctggtatattttcatttagcattggggtc
ctgaatgctgacagtgcagagctgcagcagattgctactgatggaagcttcgcctatact
gccctggatatccgtaaccttgatgctcttcaagaattaatactgcccaacattgttgga
gtggcccaaagactcattttgttagcggccccaaccattgtgactgaagttattgaagtg
aacaagaaggatatagtcttcctgatagatggctcaactgctttggggactgcccccttt
aacgcaattcgtgatttcgttgccaaaattgtccaaaggctggaggttggacccgacctg
atccaagtggcggtggcacagtatgcagacaccgtgaagccagagttttattttaacacc
caccagaccagaaaggatgtgatggccaatgtgaggaagatgaagctcatgggtggcacg
acactcaacactggctcggcactggactttgtgaggaacaacttcttcaccaatgctgcc
gggtgcaggatggaggaaggggtgctgcccatgctggtgctcatcactgggggtaagtcc
agggatgctgttgaccaagccgcggaggagatgaaaaggaaccggatagtgacccttgcc
gttgggtccagaaatgctgacctggcagagctccaacaaattgctcacgagcgagatttt
gtgttcaacccaaatgacttccgccttcagttcatgcaagccatccttcctgaagtgctg
tcacctatccggacactctctggaggagtgattgttccagagccaccggcagttcaagta
accaaaagggatatcatctttcttttggatggatcactcaacgttggaaatgccaacttc
ccctatgtgcgggactttgttgccaccctagttaactaccttgatgtcggcagtgacaaa
atacgagttggcttagtgcaatttagcgacactcccaaaaccgagttctccctgtactcc
taccaaaccaaatctgacataatccagcgcttgggccagctgaggcccaaggggggctct
gtgctgaacactggctctgcgctgaactttgtgctcttgaatcacttcacggaggccggt
gggagcagaataaatgaacaagtgccccaggtcctagtcctggtgacagcagggagctct
gctgaccccttcctccaagtttccaatgaattagctcgggctggagtgctgacttttgct
gttggcgttaggaatgcggataaggcagagcttgaaaagattgcctttaatccaagaatg
gtgtattttatggatgatttcagtgctctggcagctttaccccaggagttaaataagccc
ataacaacatatgttagtggaggtgtggaagaggttccactcgccccaacagaaagcaag
aaagatgttttattcctgattgatggctcaaccaacctcttgggcagctttcctcccgtc
cgggattttgtacacaaagtaatttctgacctgaacgtgggttccgatgccacgcgagtc
gctgtagctcagttcagtgacaccgtccaagttgaatttgactttgctgaatactcatcc
aagcaagatatgcttatcaaagtgaaaaggatgaagcttaaaagtgggaagcaactgaac
attggagctgcacttgacgaagctataagaaggctgtttgtgagggaagctggaagcagg
atcgaagaaggggttcctcagtttttgatccttcttgttgctgggaaatcagctgatgat
gtggaggagccatcagatgttctgaagcatgctggagttgtaacctttggtatcaaagcc
aaaaatgctgaccccacagagctgcaaaggattgtttacgccccacaattccttctgaac
gttgaatccctccaacggatttcagagcttcagccaaacatagtgaacctgttgagaaca
gtccagcttcagccaacagtagttgagagaggtgagaagaaggatgtggtgtttctaatt
gatggctcggatggtgtcagaagaggtttccctctactgaagacgtttgtccaaagagtt
gtcgagagcctggacgttggtcgtgacaaggtgcgcgtggccgtggcacagtacagcaac
accatccagcccgagttcttgcttgacacctacgaggacaaagcagatcttatcagcgcc
atccaacagctgaagctcatgggagggtctcctctgaacactggggcagccctcgactat
ctcatcaagaatgtgttcacggtgtcaagtggcagcagaatagcggagggcgtcccgcag
ttcctgatcctgctgactgctgaccggtcccaggacgatgtcaggaggccctcagtggtc
ctgaagacaagtggcacggtgccctttggcattgggattggaaatgccgacctcacagag
ctgcagaccatttccttcctcccagattttgctatctctgtgcctgatttcagccagctg
gattcagtgcagcaggtcgtctccaacagagtcatccggctgaccaagcaagaaatagaa
tctattgcccctgacctggtttttacatcacccagcccagcgggtgtgaagagggacgtg
gtgttcctggttgacggctcccgctacgccgcccaggagttctaccttgtccgcgacctc
atcgggaggatcgtgagcaacctggacgtgggcatcgacaccaccaggatttcggtggtc
cagttcagcgagcatccccatgtggagttcctgctcaacacccactccaccaaggatgag
gtgcagagcgccgtgaggcagctgcggtccaaaggtggccagctggtgaacgtgggggag
gccctggagtttgtggccaagaccatcttcacccggccctccgggagccgcatagaggaa
ggcgtcccacagttcttggtcatcctctcctcccgcaagtctgatgatgactttgagtat
ccatccctccaagtcaagcaagtgggggtggcacctatgatgatagcaaagaacgtggat
actgaagagatgatacagatttcccttagtcctgaatatgtgttccaagtctccagcttc
caggaactgcccagcctcgagcagaagctgctgactccaattgaaaccctgactgtggac
caaatcaggcggctgctgggagatgtgcaaccccccatagatgtttctggagatgaaaag
gacatagtcttcctcattgacagctctgacagcgttcgaccagatgggcttgctcatatt
cgggatttcgtcagcagaattgtccagcagctggaagtggggccaaacaaagtgcggatt
ggggtggtgcagttcagcaatggtgtcttccctgagttctacctgaagacccacaagtcc
aaaaatgctgtcctggaagccatccgccgcttgaggcttagaggtgggtctcccctgaat
gctggcaaagctctggacttcgtggtgaagaactacttcatcaagtctgcggggagcagg
atagaagatggagtgccccagcacctggtggtcatccttggagaccggtcccaggatgac
gtggacagacctgccagagtgatcacttccacaaacatcaaacctctgggtgtcggagcc
aggaatgtggacagggaccagctgcaggtcattaccaatgatcctgggcgtgtgcttgtt
gtacaggacttcacggggctctcaaccttagaaaagagagtgcagaatattcttgacgaa
ctcccaatacctacaacagactcacctggaccattcctacctggagatgagggcaaaaag
caggctgatattgtgtttttgctggatggctccatcaatctggggagagataacttccaa
gaagttctccagtttgtctactctgtggtggatgccatttacagggatggcgactctatc
caggtaggactggcccagtacaactcggatgtcactgatgagtttttcctcaaggaccac
tccaccaaagctcaaattttagatgctatcaacaaagtcatctacaaaggcgggcgagtg
gccaacaccggcgcggccatcaagcacatccaggagagacactttgtgaaggaggccggc
agccggattgaccagagggtgccccagattgccttcatcgtcacgggtgggaaatctaca
gatgatgggccaagggcctccttggaaatcacgcagaaaggtgtcaaggtgttcgccgtc
ggtgtgaagaacattgacctgaaggaagtcagcctgttggccagcgagagtgccatgagt
ttcagagcatccacagcccaggagctgtcagagctgaatgaacaggtcctggtcacactg
gaagctgccatggaggagagattgtgcccaggagcaacagatgtgacaagagattgtgac
ttagacgtgataattggctttgatgtcagtgatgttgggcccggtcaaaacatcttcagc
tcccagcgaggtctggagtcgagagtggagtctgtgctgaacaggattacgcagatgcag
aagatcagctgcactggcaaccaggcacccaacgtcagggtggccatcatggcccaggcc
caggggggacctgtggagggcctggacttctctgagtaccggcctgagctcttggagaag
ttcctggacatgcggacccgcggggcctattacctcagggcagatacactgaggtcctac
ctgagcaaattccggtcctcacctgctggcagcaccaaggtcataatccattttactgat
ggtgcagatgagccgatagatcagctggaggctgcttcatctactttacactcagaagga
gtcaatgctctcatctttgtcgggctggaccgagtgaccaactttgacagactgatgcag
ctggagtttggccgtggcttcacctacaacagaccactcagagttaatctgctggacttg
gattttgagctggcagagcagcttgacaacatcgcagagaggacgtgctgcaaagtcccc
tgcaagtgctcagggcagagaggggacagaggtgtgccaggccctataggaccaaagggt
gtcacaggggatctgggatatggaggctatcctggtgatgaaggaggaccgggtgagcgt
ggaccaccaggtgtgaatgggacacaaggtttccagggatgccctgggcacagaggaaca
aagggttcccggggattcccaggagagaagggtgaactgggagaaatgggtctggatggc
attgatggagaagagggagacaagggtttgcctggctcctctggagagaagggatattct
ggcaggaggggagataagggagttaagggtgaacgaggagaacgaggtgaccgtgggctc
cgtggagatccgggagattcaggagctgataatactcaacgaggccccagaggacaaaag
ggtgaaattggaccaatgggagatcctggaccggcagggctcgagggccaagaaggtgga
gttgggaggaggggcatgccaggacgaaggggacccataggagttaagggcaccaagggc
gctcctggtcaagcagggccagctggagagcaaggcatgcgagggccacagggtccccct
ggcccggttggcacaccagggatcagaggagagcaaggtgtccctggacccagggctggg
agtgggccaccaggacccccaggagaacgtggcaggactggtcccctgggaaggaagggt
gagcctggaaaccctggacccaaagggccggatggacagccaggcccaagaggagagatg
ggtgatgatggacgagatggaattggtggcccgggtcctaaaggcaggaagggagaacgt
ggcttcgtaggttatgcagggccaaagggtggacctggtgaccgtggtgttgctggaggc
ccaggccccaaaggaaacagaggccgcagaggaaatgcaggagtacctggggcacctggt
cagaaaggagagattggataccctgggccatctggccttaaaggggagaaaggagaatcc
agagatcaatgtgcactggtgcggaacatcaaagacaaatgcccttgttgctatggtccc
aaggagtgtcctgtcttcccaactgagctggcctttgctattgacacctcctcaggcgtc
gtgagggacgttttcaacaggatgaagcaaactgtgctcagagtggtcaacaacttaacc
atcgctgagagcaactgtccccggggggcacgggtggctctggttacctacaataatgag
gtcaccaccgagatccgctttgctgatgccaggaagaaatccagcctcctccagcagatc
caaaacttccaggcaaccctgaccacgaagccacgcagtctggagactgccatgtccttt
gtggccaggaataccttcaagcgtgcccgcagtggcttcctgatgaggaaggtggctgtc
ttcttcagcaatggggacacgagagcatccccccagctcaacgatgctgtgctgaagctc
tacgatgctggggtcgtgccagtgttcctcaccagccggcaggatgcagttcttgccaga
gctctggagatcaacaacacggcggttggccacgccattgttcttccaaccagcggcggt
cagctgaatcaaaccattcagaggcttttgacttgtcacatttgtttggatgtgtgtgac
cctgatcccagctgtggtgcaagtggccagagaccaacgttcagagacagaagggcagcc
cccacagacgtggatacagacatagccttcatcctggacagctccgagtccaccacccct
ctgcagttcagtgagatgaagaagtacatttcccatattgtaactaacctggaaatcagc
tcagagccaaaaatatcccagcatcatgccagagtggctgttctccagcaagctccttat
gaacatgaaatcaactccagcttcccaccagtaaaaactgagttctcactgactgattat
gtatccaaagagaagatcattaattacctccacaaccaaatgacccagctccatggcacg
agtgccctaggaagtgcaattgaacacacaattgctcatgtttttgaaagtgcgccgagc
cctcgggatctaaaagtcatagttctgatgatgactggaaaagtgaacaaaaaagaactt
gagcacctgcagagggttgtcgtcaatgcaaaatgcaaagggtacttctttgttgtcctg
ggcattggcaggaaggtgaatgccaagaatatctacagccttgccagtgagccaaatgat
gtgttcttcaagctggttgataaatcaggagagctccatgaagagcccttgctgcgtttt
gggacactgctgccatcttttatcagaagtgaatttcctttctacctgtctccagagata
aggacacaatgtgaatggctccagaatggtcagcaaatccagagccagcaccctgtgctc
actgggcagaaagcagtgttcatggctcccaacgccaccgtcagccggaccttcactgcc
agcaccacggtcagcgcaacaatcgatccagcggcgagtgcccaggccagaagcactcct
gccagcaccacggcccagggcacagccacagagaccaccccggccagctccgtggtccag
gggaatgccacagctgagggagcagccagtgccaccacccacaccaaagccagcggccgg
gccaccaccaatgccaacgccacaaccaccgtggccggtggcaggaggagacacagtgca
aagacccacgacatccagatcacagacgtcaccgagagcagtgccaggctgcgttgggcc
agccctgagccacacaacacctttgatgtcactgtcaccttggcccacgaccactccctc
gtgcagaggcaaaacctgactggcactgagcacgtgatccgagggctcaggagtgggcaa
aaatacgtcgtcgtcatcactggcttccaaaaatcccagcccaaagtaacctacacaggg
tcattcagcacgaagaccccggcccagccccaggtgtctctggccaacatgatgctcaac
actgagccactggaggggcctgagagtgtcatggatatctgccggctgcagaaggatgag
ggcacctgcaggagctttgtgctgaagtggtactacgaccccgagaccaagagctgcgcc
cgcttctggtacggtggctgcggtggcaacgagaacaggttcaacacacagaaagaatgt
gaaaaactctgcatccctggtgccatcaaccccggcgtggtgacgacaatagggacatag
DBGET
integrated database retrieval system
