Cinclus cinclus (white-throated dipper): 134052601
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Entry
134052601 CDS
T10813
Symbol
LIG3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
134052601 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccic03400
]
134052601 (LIG3)
Enzymes [BR:
ccic01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
134052601 (LIG3)
DNA repair and recombination proteins [BR:
ccic03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
134052601 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
Synaptonemal_3
aRib
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
134052601
NCBI-ProteinID:
XP_062363121
LinkDB
All DBs
Position
22:5788731..5802402
Genome browser
AA seq
1021 aa
AA seq
DB search
MPTGGRTLSHAARALVRSAALFCPRPQLPLPRPLSYSAGVSLGCWCQLLFQPVSVLSPKQ
RGAAFPLSLLLGGWLRSACTAAEDMAEQRYCVDYAKRGTAGCKKCKEKIVKGMVRIGKIV
PNPFTESGGDMKEWYHVKCIFEKLDKARATTKKIEDITDLEGWEELQDEEKEIINKHISE
ANSKTGGTPKKKVIVQAKLTATGQLTTKDPPKKFSGFTAKPKNSEDAPANSAQKASLSAA
RCDPKHKDCLLREFRKLCAMVAEKPSYNVKTQIIQDFLRKGSAGDGFHGDIYLTIKMLLP
GVIKIVYNLNDKQIVKLFSRIFNCNQEEMVRDLEQGDVSETVRIFFEQSKTCPPAAKSLL
TIQEVDEFLIQLSKLTKEDDQQSVLQQISRRCTGNDLKCIIRLIKHDLKMNAGAKHVLDA
LDPNAYEAFKASRNLQDVVERVLQNQQEAEKVPGLKRTLSVQASLMTPVQPMLAEACKSI
EYAMKKCPNGMYAEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKDFIPQAFPGG
QSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYFNDVSLMDRPLCE
RRKFLHDNMVEIPNRILFSEMKHVTKASDLADMITRVIREGLEGLVLKDLKGNYEPGKRH
WLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPKSEKWCTVTKCSGG
HDDATLARLQTELDMVKISKDPSKIPRWLKINKIYYPDFIVPDPKKAPVWEITGAEFSRA
EAHTADGISIRFPRCTRIRHDKDWQTATNLQQLKELYQLSKEKADFSVTAGEEDESTAGS
SGENDGNSRSSTPHSSIKSPPSKSPAKAQKAEESKGIIGSPQKSEEKRGEKRKASEMEDN
GKKVQSGARPAPRAGWGSLRPSLFVHFTPRNVCARALLLLPPQQPLLDIFTGVKLYLAPS
VKDFARIRRYFIAFDGDLVAEFDTASATHVIGDIEDNPGAQRVSPRWIWECIRKRRLVAP
C
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atgcccacgggaggcaggacgctgtcacacgctgcccgcgctctcgtcaggagcgctgcg
ctgttctgccctcgcccgcagctccccttgcccagaccgctctcctactctgccggagtc
agcctcggttgctggtgccagctgctcttccagcctgtctccgtgctatccccaaagcag
cgcggtgctgcttttcctctctccctacttttgggcggctggctgcgctcagcctgcacg
gctgcagaggacatggcagagcagcggtattgtgtggactatgccaagcgaggcaccgcg
ggctgcaagaagtgcaaggagaagatcgtgaaggggatggtgcgcattgggaagattgtt
cccaatcctttcaccgagtccggaggggacatgaaggagtggtaccatgtcaagtgcatc
tttgagaagctggacaaggcccgagccaccaccaagaaaatcgaagacatcacagacttg
gagggatgggaagagctgcaggatgaggagaaagaaataatcaacaagcacatctcagaa
gccaattcaaagactggaggtaccccgaagaaaaaagttatagtccaagcaaaactcaca
gccacaggacagctgaccacaaaagatccaccaaagaaattctctggattcactgccaag
ccaaagaattcagaagatgcccctgcaaactctgcccagaaggccagcctgtctgcagcc
aggtgtgatcccaagcacaaggactgcctgctgcgggaattccgcaagctctgtgccatg
gtggctgagaagccaagctacaatgtgaaaactcagatcatccaggacttcctcaggaag
ggatctgcaggagatggttttcatggtgatatatacctgactattaagatgctgttacca
ggtgtcattaaaatagtttacaacttgaatgataagcagattgtcaagctgttcagcagg
atttttaactgcaaccaagaagaaatggtccgggacctggagcagggagatgtttccgag
accgtacggattttctttgagcagagcaagacgtgtcccccagcagccaagagcctcctg
accatccaggaggtcgatgaattcctcatccagctgtccaaactcaccaaggaggatgac
cagcagagtgtcctgcagcagatcagtcgcaggtgtacgggcaatgacttgaagtgcatc
atcaggctaattaagcatgacttgaaaatgaacgctggagcaaagcacgtcctggatgct
ctggatcccaacgcctacgaggcgttcaaggcctcacggaacctgcaggacgtggtggag
agggtgctgcagaaccagcaggaggccgagaaggtgccggggctgaagagaaccctgagc
gtgcaggcctcactcatgaccccagtgcagcccatgctggctgaggcctgcaagtccatt
gagtatgccatgaagaagtgtcccaacgggatgtacgccgagatcaagtacgacggcgag
cgcgtgcaggtgcacaagaacggggatcacttcagctacttcagcaggagcctcaaacct
gtgctcccccacaaagtagcccattttaaggatttcatcccccaggctttccctggtggg
caaagcatgatcctggattcagaagttctcctgattgacaataaaactggcaagccactt
ccttttgggactcttggtgtgcacaagaaagctgctttccaggatgccaacgtttgcctg
tttgtgtttgactgcatctacttcaacgatgtcagcctgatggacaggcctctgtgtgaa
cggcgcaagttcctccacgacaacatggtggagatccccaacagaatcctgttctcagag
atgaaacatgtcacaaaagcttcagatctggcagacatgatcacccgagtcatccgggag
gggctggaagggctggtgctgaaagatttaaaggggaactatgaaccagggaaacgccac
tggctgaaggtgaagaaggattatctcaacgagggggcaatggctgacacagctgacctg
gtggtgctgggggctttctatggacaaggcagtaaaggtgggatgatgtccatcttcctc
atgggctgctacgaccccaagagtgagaagtggtgcacggtgaccaagtgctctggtggc
catgatgatgccaccctggcacgtctgcagacggagctggacatggtgaagatcagcaag
gatcctagtaaaattccaaggtggctaaaaattaacaaaatctactacccagacttcatt
gtcccagatccaaagaaagccccagtgtgggagatcaccggggccgagttctccagggcc
gaggcgcacactgcggacgggatctccatccgcttcccgcgctgcacccgcatccgccac
gacaaggactggcagactgccaccaacctgcagcagctcaaggagctgtaccagctctcc
aaggagaaggctgatttcagtgttacagctggggaggaagatgagtccacagctggcagc
agtggagagaatgatgggaattccaggtcttccacacctcacagcagtattaagagtcct
ccaagcaagtcacctgcaaaagcccagaaggcagaagagagcaaaggaatcatcgggtcc
cctcagaaatccgaggagaaacgaggggagaagagaaaagcatccgagatggaggacaat
ggaaagaaggtacagtcaggggccaggccagcacccagggcggggtgggggagcctgagg
ccatcgttgtttgttcacttcactccaaggaacgtttgtgcccgagctctgcttctcctt
ccccctcagcagccgctgctggacattttcacgggggtgaagctctacctggcgccctcg
gtgaaggattttgcccgaatccgccgctacttcatcgcctttgacggggacctggtggca
gagttcgacacggcctcggccacccacgtcattggggacattgaggacaaccccggggca
cagagggtctctcccaggtggatctgggagtgcatccggaagcgcaggctggtggccccg
tgctag
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