Cinclus cinclus (white-throated dipper): 134052644
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Entry
134052644 CDS
T10813
Symbol
RPA1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit isoform X1
KO
K07466
replication factor A1
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic03030
DNA replication
ccic03420
Nucleotide excision repair
ccic03430
Mismatch repair
ccic03440
Homologous recombination
ccic03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
134052644 (RPA1)
03420 Nucleotide excision repair
134052644 (RPA1)
03430 Mismatch repair
134052644 (RPA1)
03440 Homologous recombination
134052644 (RPA1)
03460 Fanconi anemia pathway
134052644 (RPA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ccic03000
]
134052644 (RPA1)
03032 DNA replication proteins [BR:
ccic03032
]
134052644 (RPA1)
03400 DNA repair and recombination proteins [BR:
ccic03400
]
134052644 (RPA1)
Transcription factors [BR:
ccic03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
134052644 (RPA1)
DNA replication proteins [BR:
ccic03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
134052644 (RPA1)
DNA repair and recombination proteins [BR:
ccic03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
134052644 (RPA1)
MMR (mismatch excision repair)
134052644 (RPA1)
DSBR (double strand breaks repair)
HR (homologous recombination)
134052644 (RPA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
RADX
CATSPERD-E_C
IBR
Motif
Other DBs
NCBI-GeneID:
134052644
NCBI-ProteinID:
XP_062363176
LinkDB
All DBs
Position
22:complement(4821802..4844609)
Genome browser
AA seq
622 aa
AA seq
DB search
MSARLSEGAIAAIMQGEDISRPVLQVVNTRAIATGTGPPRYRVLMSDGVNTLSSFMLATQ
LNSLVEEERLSAWCICQVNRFIVNSLKDGRRVVILMDVNVLQTADQVGGPIGNPQPYNEG
QGQRSAAPAVNPAPSKPQQQNGNLSGAGPAAPKYHAPSNQFGKASAPSAPSAPSAPSALK
TPGGTQAKVVPIASLNPYQSKWTICARVTQKGQIRTWSNSRGEGKLFSIELVDESGEIRA
TAFNDQADKFFPLIELNKVYYFTKGNLKTANKQYTAVKNDYEITFTNETSVVPCDDAPHL
PSVQFDFVSISDLENTPKDSIVDVIGICKSYEDVTKIIVKANNREVSKRNVHLMDTSGKL
VTATLWGNEAEQFDGSRQPVIAIKGARVSDFGGRSLSVLSSSTVVINPDSPEAFKLRGWF
DSEGQLLECASISDVRGGPAAGANTNWKTLFEAKSENLGQGDKADYFSCVGTIVHLRKEN
CMYQACPSQDCNKKVIDQQNGLYRCEKCDREFPNFKYRLMLLVTIADCLEYQWVTCFQDT
AELILGQNAALLGELKEKNEQAFEEVFQNANFNTYEFRIRVKLETYNDESRIKATAVDVK
PVNYREYSKRLIANIRRNAQLG
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcgcggctgagcgagggggccatcgcggccataatgcaaggggaggacatctcc
aggcccgtgctgcaagtcgtcaatacacgggctattgccacaggaactgggcccccacgt
taccgagtgctgatgagtgatggggtgaacaccctttcctcattcatgttggccacacag
ctgaactccctggtggaagaggaacgcttgtcagcttggtgtatctgccaggttaacaga
ttcattgtcaacagcctgaaagatggaaggagagtggttatcctgatggatgtaaatgtc
ctgcaaactgctgatcaggttggtgggcctattggcaatccccagccgtacaatgaagga
caagggcaacgttctgcagctccagcagtaaacccagcacccagcaaaccacagcaacaa
aatggaaatttgtctggtgcaggtcctgctgctcctaagtaccacgctccctctaaccag
tttggaaaagccagtgctcccagtgctcccagtgctcccagtgctcccagtgccctgaag
acacctgggggtactcaggccaaagtggtgccgattgccagtttgaatccataccagtcc
aagtggaccatttgtgctcgtgttacccaaaaaggtcagatccgcacgtggagcaactcc
cgtggtgaaggaaagctcttttccatagagctggttgatgaaagtggtgagattagagct
actgcattcaacgatcaagcagacaagttttttccactcattgaattgaacaaggtatat
tattttaccaaaggcaatttgaagactgctaacaagcaatatacagctgttaagaatgac
tatgagattacattcactaatgagacttcagttgtgccctgtgatgatgccccgcatctt
ccatctgttcagtttgattttgtatccatctctgacttggagaacacgcccaaagactca
attgttgatgtaattggaatttgcaagagctacgaagatgtcactaaaattatagtgaaa
gctaacaatagagaggtttcaaagaggaacgtgcatctgatggatacatcagggaaactg
gtgacagctacgctgtggggaaatgaggctgaacagtttgatggttccagacaacctgtg
attgccatcaaaggagcccgtgtctctgactttggtggcagaagcctgtctgtcctgtct
tccagcacagttgtcatcaaccctgatagcccagaggctttcaagctccgaggatggttt
gactccgaggggcagcttctggaatgtgcctccatctctgatgtgaggggtgggccagca
gctggagcaaataccaactggaaaactttgtttgaagccaaatctgagaacttgggacaa
ggagataaggcagattattttagctgtgtgggcacaattgtacatctgcgcaaagagaac
tgcatgtaccaggcatgtccctcccaggattgcaacaagaaagtgatagaccagcaaaat
ggactttaccgctgtgagaagtgtgaccgagaattccccaacttcaagtaccgcctgatg
ctcctggtgaccattgcagactgtctggaatatcagtgggtgacttgttttcaagacaca
gcagaattaattcttgggcaaaatgcagctttactgggagaactgaaggaaaagaacgag
caggcttttgaagaagtgttccaaaatgcaaacttcaacacctacgagttcaggatccgg
gtgaaactggagacttacaatgatgaatctcgtattaaggccacagcagtcgacgtcaaa
cccgtgaactacagagaatacagcaagaggttgattgccaacatcaggagaaatgctcag
ttggggtga
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