Cinclus cinclus (white-throated dipper): 134053565
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Entry
134053565 CDS
T10813
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6 isoform X1
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic03018
RNA degradation
Brite
Enzymes [BR:
ccic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
134053565
Messenger RNA biogenesis [BR:
ccic03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
134053565
mRNA degradation factors
5'-3' decay
Decapping complex
134053565
Chromosome and associated proteins [BR:
ccic03036
]
Eukaryotic type
Gene silencing
piRNA pathway
134053565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
134053565
NCBI-ProteinID:
XP_062364615
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Position
25:7426112..7446256
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AA seq
483 aa
AA seq
DB search
MSTARTENPVIMGLSSQNGQLRGPVKPSGGPGGGGTQTQQQMNQLKNANTINNGTQQQAQ
SMTTTIKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPS
PIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQV
SQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVEHV
QMIVLDEANKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINL
MEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYS
CFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLH
RIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHSEPVED
EKQ
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgagcacggccagaacagagaaccctgttataatgggtctatccagtcagaatgggcag
ttgagaggccctgtaaaacccagcgggggcccaggaggtggaggcacacaaactcagcaa
cagatgaaccagctgaaaaatgccaacacaatcaataatggcactcaacagcaagcacag
agtatgaccaccactattaaacctggtgatgactggaagaagactttaaaactccctcca
aaggatttgagaatcaaaacttcggacgtgacctccacaaaaggaaatgagtttgaagat
tactgtttgaaacgggagttgctgatgggaatttttgaaatgggctgggaaaaaccatct
cctattcaggaggagagcatccccattgctttatctggtagggatatcttggcaagagca
aaaaatggaacaggcaagagtggagcctacctcattcctttacttgaacggctagactta
aagaaggacaatatacaagcaatggtgattgttcccacccgtgagctagccctgcaggtc
agtcaaatctgtatccaagtcagcaaacacatgggaggtgccaaagtgatggcaacaacc
ggaggaaccaatttgcgagatgacattatgagacttgatgatacagtgcatgtggtgata
gctacccctgggagaattcttgatctcatcaagaaaggagtagcaaaagttgagcatgtc
cagatgatagtattggatgaggcaaataagttgctgtctcaagattttgttcaaataatg
gaagacattattctcacgctacctaaaaacagacagattttgctctactcagccactttt
cctttgagtgtgcagaagttcatgaattcccatttacagaaaccctacgaaattaatctg
atggaggagctgaccttgaagggagttactcagtactatgcctatgtcactgagcgtcag
aaagtgcactgcctcaatacactcttttccaggctccagattaaccagtcgatcattttc
tgcaactcctctcaacgggttgaattgctagccaaaaagatctcccagctgggctattcc
tgcttctatatccatgctaaaatgaggcaggagcaccgcaatcgtgtattccatgacttc
cgaaatggcttgtgccgcaatctcgtttgcactgatctgtttacccgaggtattgatatc
caggctgtgaatgtggtgataaactttgatttcccaaagctggcagaaacttatctccat
cgcattggcagatcaggtcgctttggtcatcttggcctggccatcaacttgatcacctat
gatgatcgattcaacctgaaaagtattgaggagcagttgggaactgaaattaaacccata
ccaagcaacattgacaagagcttgtatgtggcagaataccacagtgaacctgtagaagat
gagaaacagtaa
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