Cinclus cinclus (white-throated dipper): 134053814
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Entry
134053814 CDS
T10813
Symbol
HDAC1
Name
(RefSeq) histone deacetylase 1
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic03082
ATP-dependent chromatin remodeling
ccic03083
Polycomb repressive complex
ccic04110
Cell cycle
ccic04330
Notch signaling pathway
ccic04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
134053814 (HDAC1)
03083 Polycomb repressive complex
134053814 (HDAC1)
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
134053814 (HDAC1)
04350 TGF-beta signaling pathway
134053814 (HDAC1)
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
134053814 (HDAC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ccic03036
]
134053814 (HDAC1)
Enzymes [BR:
ccic01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
134053814 (HDAC1)
Chromosome and associated proteins [BR:
ccic03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
134053814 (HDAC1)
HDAC complexes
Sin3A-HDAC complex
134053814 (HDAC1)
BRAF-HDAC complex
134053814 (HDAC1)
REST complex
134053814 (HDAC1)
SHIP complex
134053814 (HDAC1)
MiDAC complex
134053814 (HDAC1)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
134053814 (HDAC1)
Heterochromatin formation proteins
Other heterochromatin formation proteins
134053814 (HDAC1)
Chromatin remodeling factors
NuRD complex
134053814 (HDAC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
134053814
NCBI-ProteinID:
XP_062365039
LinkDB
All DBs
Position
26:complement(5532145..5543443)
Genome browser
AA seq
487 aa
AA seq
DB search
MALTQGTKRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKAN
AEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSAGGSVAS
AVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHG
DGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAI
FKPVISKVMETFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGG
GGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLE
KIKQRLFENLRMLPHAPGVQMQPIPEDAVQEDSGDEEEDDPEKRISIRNSNKRISCDEEF
SDSEDEGEGGRKNVANFKKAKRVKAEEDKEEEEKKDEKEEEKAKEEKPAPAAAAAEPKGV
KEETKST
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgacgcaggggacgaagcgcaaagtctgctactactacgatggggatgttggg
aattattactatggccaaggacatcccatgaaaccccacaggatccgtatgacccacaac
ctcctgctcaactatgggctctacaggaagatggagatctatcgtccccacaaggccaat
gcagaggagatgaccaagtaccacagtgatgattacatcaaattcctgaggtccatccgc
cctgacaacatgtctgagtacagcaagcagatgcagagatttaatgttggggaggactgc
cctgtgtttgatgggctctttgagttctgtcagctctctgctggaggatctgttgccagt
gctgtgaagctgaacaagcagcagacagacattgcagtgaactgggcaggagggctccac
cacgccaaaaaatcagaagcttctggattctgctacgtcaacgacatcgtcctggccatc
ctggaactcctcaagtaccaccaacgggtgctgtacattgacattgacatccaccacggg
gatggggtggaggaggctttttacaccacagaccgagtcatgaccgtgtccttccacaaa
tatggagaatatttcccaggaactggggacctgagggacatcggggcaggcaaagggaaa
tactacgctgtgaattacccgctgcgcgacggcatcgacgacgagtcctacgaagccatt
ttcaaacctgtgatctccaaagtgatggagacgttccagcccagcgctgttgtcctgcag
tgcggctccgattccctgtctggggacaggctgggctgcttcaacctcaccatcaaaggc
catgccaagtgtgtggagtttgtgaagagctttaacctgcccatgctgatgctgggagga
ggggggtacacgatccgaaacgtggctcgctgctggacctatgagactgctgtggccttg
gacactgagattcccaatgaacttccatacaacgactactttgagtactttgggccagac
ttcaagctccacatcagcccctccaacatgaccaaccagaacaccaacgaatacctggag
aaaatcaagcagcggctcttcgagaacctgcggatgctccctcatgctcctggggtccaa
atgcagccaattcctgaggatgctgtccaggaggacagtggggatgaagaggaggatgat
cctgaaaaacgcatttccatccgaaattccaacaagagaatatcctgtgatgaggaattc
tccgactccgaggacgagggcgagggagggcgcaaaaacgtcgccaattttaaaaaagcc
aaacgtgtgaaagctgaggaggacaaggaggaagaggagaagaaagatgagaaggaagag
gagaaagcaaaagaggaaaaaccagcaccagcagcagcagcagcagaacccaaaggggtg
aaggaagagacaaaatccacctga
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