Cinclus cinclus (white-throated dipper): 134053924
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Entry
134053924 CDS
T10813
Symbol
COL9A2
Name
(RefSeq) collagen alpha-2(IX) chain
KO
K08131
collagen type IX alpha
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic04510
Focal adhesion
ccic04512
ECM-receptor interaction
ccic04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
134053924 (COL9A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
134053924 (COL9A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
134053924 (COL9A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ccic00535
]
134053924 (COL9A2)
Proteoglycans [BR:
ccic00535
]
Extracellular matrix (ECM) proteoglycans
Others
134053924 (COL9A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
134053924
NCBI-ProteinID:
XP_062365262
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Position
26:complement(5191197..5206905)
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AA seq
690 aa
AA seq
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MARATLVSQLWLLLQASCLCLAQLRGPPGEPGPRGPPGPPGVPGADGIDGDKGPAGAPGS
PGAKGEPGAPGVDGSPGKPGIDGLTGAKGEPGPIGRPGIKGQPGLPGPPGLPGPSLPGPP
GLPGQVGLPGEIGVLGPKGDPGPDGPRGPPGPPGKPGLPGHLQGLEGSADFLCPTSCPPG
PKGPQGLQGLKGHRGRPGALGEPGKQGELGPKGDVGASGEQGVPGPPGPQGLRGYPGMAG
PKGETGPAGYKGMVGSIGAAGRPGREGPKGPPGDPGDKGELGNRGIRGPQGDIGPKGENG
LPGIDGKDGTPGIPGVKGGTGQAGRPGTPGHRGQAGLPGQPGSKGGPGDKGEAGPRGHPG
VTGAPGQLGEPGPRGEQGPQGVPGLKGDRGERGLVGPPGEQGRAGPKGEQGPPGIPGPQG
LPGVKGDKGSPGKTGPKGSVGDPGVHGLAGLKGEKGESGEPGPKGQQGIQGDLGFPGPSG
DAGAPGIRGYPGPPGPRGLVGERGVPGMPGPRGAAGRDAGDQHIVDVVLKMLQEQLAEVA
VSAKRAALGGVGAVGPPGPPGPPGPPGEQGPHGPMGPRGVPGILGAAGQIGNVGPKGKRG
EKGERGEVGRGHPGMPGPPGIPGLPGIPGHALDGKAGERGVPGSPGEAGRPGLPGPPGFP
GFCEPAACLGASAYAAARLTEPGSVKGPLY
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggcccgtgccaccctcgtgtcgcagctctggctcctgctccaagcctcctgcctctgc
ctggcccagctcagagggccaccaggagaacctggcccacgagggccccccggtccccca
ggagtgccaggagctgatggcatcgatggtgacaaaggtcccgctggagcccctggctcc
ccgggtgccaagggcgagcctggagcccccggtgtggatggatcccccgggaagccgggc
attgatggcctgacaggagcgaaaggggagccaggacccattggcaggccaggaattaaa
ggccagcccggactcccagggccaccagggctccctggtccttcactgccaggacccccc
ggacttccaggccaggttggacttcccggagagatcggagtgctgggacccaagggtgac
cctggacccgacggccccaggggtcccccaggtcctccagggaaacccggcctcccagga
catctccagggcctggaaggcagcgctgatttcctgtgccccaccagctgccccccaggt
cccaaaggccctcagggactgcagggactgaagggacacagaggccgccctggcgccctc
ggagagcccggcaagcagggagagctgggccccaagggggacgttggtgcctctggagaa
caaggagtcccaggccctccgggacctcagggcctcaggggttatcctgggatggcaggg
cccaagggtgagacgggtcctgctggctacaagggcatggtggggagcatcggagccgcc
gggcggccgggcagggaaggtcccaagggaccacctggggaccctggtgacaagggagag
ctgggtaaccgtggcatcaggggaccccagggtgacatcggccccaaaggggagaatggt
ctcccgggcatcgatggcaaggatggcaccccaggaatccccggagtgaagggtggcaca
ggacaggccggacgcccgggaacgccaggacaccggggacaagctggattgccgggccag
ccgggaagcaaaggtggcccaggtgacaagggtgaagcgggtccccggggccaccccggt
gtcaccggtgccccagggcagctcggtgagcccggacctcggggtgagcagggtccccag
ggtgtccccgggctgaagggtgacaggggagagcgtggcctcgtgggtccccccggggag
cagggcagagcggggccaaaaggtgagcagggcccaccagggatcccaggaccccaaggc
ttacctggagtcaaaggagacaagggttctccgggcaaaaccggccccaaaggcagcgtt
ggtgatcccggtgtccatggcctggcagggctcaagggagagaagggggagtcaggagag
ccgggacccaagggacagcaaggcatccagggagacctgggcttccccggcccctctggg
gatgcaggagctccaggaattcggggctatcccggcccacccggccctcgggggctggtg
ggggagcgtggagtgccaggaatgccgggcccgaggggcgcagccggccgggatgctggg
gaccagcacatcgtggacgtggtgctgaagatgctgcaagagcagctggcagaggtggcc
gtgagtgccaagagagctgccctgggcggggtcggggctgtgggacccccaggacccccc
ggacccccgggaccacccggtgagcagggtccccacggccccatgggaccccgaggtgtc
cccggaatcctgggagctgccgggcagatcgggaatgtcggacccaaagggaagagagga
gagaagggagagcggggagaagttggccgtggccacccgggaatgccgggtcctccagga
atcccaggtctcccgggcatccccggtcacgctctggatggcaaagcgggcgagcggggc
gtgccggggtccccgggtgaggctggcaggccgggtttgccgggacccccgggattcccg
ggattttgtgaacctgccgcgtgcctgggagcctctgcctacgcggccgcgcgcctcacg
gagccgggcagcgtcaagggacccctgtactga
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