Cinclus cinclus (white-throated dipper): 134054146
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Entry
134054146 CDS
T10813
Symbol
SOX13
Name
(RefSeq) transcription factor SOX-13
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
ccic Cinclus cinclus (white-throated dipper)
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ccic03000
]
134054146 (SOX13)
Transcription factors [BR:
ccic03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
134054146 (SOX13)
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Motif
Pfam:
HMG_box
HMG_WDHD1
HMG_box_2
AAA_23
CREPT
Motif
Other DBs
NCBI-GeneID:
134054146
NCBI-ProteinID:
XP_062365615
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Position
27:complement(3162222..3169810)
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AA seq
619 aa
AA seq
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MSMRSPVSPPPELDGAGTMVNCTIKTEEKKESGPEIPPGAAPSTEPRPHEPPGPPPRDGT
DPQALPQVVTFCVPQESRSPTGDIPEPQRSAFEPAGGGQEKLDFNRNLKEVMPTIEKLLS
SDWKERLLGRNTADSKEVKGTQESLAEKELQLLVMINQLSTLRDQLLTAHSEQKNMATML
FEKQQQQMELARQQQEQIAKQQQQLIQQQHKINLLQQQIQQVNMPYVMIPAFTPGHQPLP
VTPESQLALPIQPIPCKPVDYPVQLLHSPPPPTLKRPAGPGHLQMQETSQPLNLTAKPKG
SELPSASSSPSLKMSGCQSLTPSHGATRDLQTSPSNLPLGFLGEGDAITKAIHDARQLLH
GHGATMEGSLSSPYRKEPVGIDSSPVKERMEETPGHRLDEALLSCEVDGSRHFPESRNNN
HIKRPMNAFMVWAKDERRKILQAFPDMHNSSISKILGSRWKSMSNQEKQPYYEEQARLSR
QHLEKYPDYKYKPRPKRTCIVEGKRLRVGEYKALMRNRRQDARQGYLIGPQGSQVPPSSS
DVLYPRPVGVQLPPPLLEHYLPRSVDPTMPVIVNTRSLKDGDAGDDGHSVAEGDMYRYSE
DEDSEGEDKSDGELVVLTD
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgtccatgaggagccccgtgtccccacccccggagctggatggagcgggcaccatggtg
aactgcaccatcaagaccgaggagaagaaggagagcggccccgaaatccccccgggggct
gcccccagcaccgagccccgaccccatgaacccccggggccaccacccagggatggaacc
gacccccaggccctgccacaggtggtgacattctgtgtcccacaggaatcccgctctccc
accggggacattcccgagccccagcgctccgccttcgagccggctggtggtggccaggag
aagctggacttcaacaggaacctgaaggaagtgatgccaaccatcgagaagctgctgtcc
agtgactggaaggagcggctgttgggcaggaacacggctgactccaaggaagtgaaagga
acccaggagagcctggcagagaaggagctgcagctgctggtgatgatcaaccagctgtcc
acgctgcgggaccagctgctgacggcgcactcggagcagaagaacatggccaccatgctc
tttgagaagcagcagcagcagatggagctggcacggcagcagcaggagcagattgccaag
cagcagcagcaactcatccagcagcagcacaagatcaacctcctgcagcagcagatccag
caggtcaacatgccctacgtgatgatccctgccttcacccctggccaccagcccctcccg
gtcacccccgagtcccagctggctctgcccatccagcccatcccctgcaaaccagtggat
tacccggtgcagctcctgcacagcccccctcctcccacgctgaagagacctgcgggcccg
ggccacctccagatgcaggagacctcgcagccgctgaacctgacagccaaacccaaaggt
tccgagctccccagtgcctccagttcgcccagtttgaagatgagtggctgccagtctctc
acaccgagccacggggccaccagggatctgcagaccagcccatccaacctccccctgggg
ttcctgggagagggcgatgccatcaccaaagccatccacgacgcgcggcagctcctgcac
ggccacggtgccaccatggaggggtccctgagcagcccctatcgcaaggagcctgtcggg
atcgattcctccccggtgaaggagcggatggaggagacccccgggcaccggctggacgag
gctctgctgagctgtgaggtggacggctcccggcacttcccagagtcccggaacaacaac
cacatcaaacgtcccatgaacgccttcatggtgtgggccaaggatgagcgcaggaagatc
ctgcaggcgttcccggacatgcacaactccagcatcagcaaaatcctgggatcccgttgg
aaatccatgtccaaccaggagaagcagccgtactatgaggagcaggcgcggctgagccgg
cagcacctggagaaatacccggattacaaatacaaaccccggcccaagcgcacctgcatc
gtggagggcaagcggctgcgcgtgggcgagtacaaggcactgatgaggaaccggcgccag
gacgccaggcagggatacttgatagggccgcagggcagccaggtgccccccagctcctcg
gacgtgctgtacccacggccggtgggcgtccagctgccccctcccctcctggagcattac
ctgccccgcagcgtggaccccaccatgcccgtcatcgtcaacacccgcagcctcaaggac
ggggacgccggtgacgacgggcactcggtggccgagggggacatgtaccgctacagcgag
gacgaggactcggagggcgaagacaagagtgacggcgagctggtggtgctgacagactga
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