Cinclus cinclus (white-throated dipper): 134054625
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Entry
134054625 CDS
T10813
Symbol
USP39
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 39
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134054625 (USP39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccic03041
]
134054625 (USP39)
Spliceosome [BR:
ccic03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
134054625 (USP39)
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SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
UCH
zf-UBP
UCH_1
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
134054625
NCBI-ProteinID:
XP_062366476
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Position
29:334302..339965
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AA seq
585 aa
AA seq
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MSSRVRRDRDSRDARGASTSSSAAASSTRVSSRSRRDADAERPRGRRDAERERARPEAAE
ALPVDLARVKREPGTSVWGGSGTAALVAPVRVKREREPDGDSDPEPEPAVRYGRFDPEDQ
RSRHCPYLDTINKSVLDFDFEKLCSISLSHINVYACLVCGKYFQGRGLKSHAYIHSVQLS
HHVFLNLHTLKFYCLPDNYEIIDSSLEDITYVLKPTFTAQHIAHLDKQAKLSRAYDGTTY
LPGIVGLNNIKANDYANAVLQALSNVPPLRNYFLEEENYRCIQRPPGDIMFLLVQRFGEL
MRKLWNPRNFKAHVSPHEMLQAVVLCSKKNFQITKQGDGVEFLSWFLNALHAALGGTKRK
KKTIVTDVFQGSMRIFTKKLPHPDLPAEEKAQLLQNSEYQERVVESTFLYLTLDLPTAPL
YKDEKEQLIIPQVPLFSILAKFNGSTEKEYKTYKENFLKRFQLTRLPPYLIFCIKRFTKN
NFFVEKNPTIVNFPITNVDLREYLSEEVQAAHAHTTYDLIANIVHDGKPSEGSYRIHVLH
HGTGKWYELQDLQVTDILPQMITLSEAYIQIWKRREEDETNQQGA
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagccgagtgcggcgggatcgcgactcccgggacgcccgcggggcctccacctcc
tcctccgccgccgcctcctccacccgcgtctcctcccgcagccgccgcgacgccgatgcc
gagcggccgcgaggccgacgggacgcggagcgggagcgcgcgcggccggaggcggcggag
gcgctgccggtggatctggctcgcgttaagcgggaaccgggcaccagcgtctgggggggc
tccggcaccgccgccctcgtcgcgcccgtgcgtgtgaagcgggagagggagccggacgga
gattctgatcctgagcccgagcccgccgtgcgctatgggcgctttgatcccgaggaccag
cgcagccggcactgcccctacctggacaccatcaacaagagtgtcctggactttgacttc
gagaagctgtgctccatctccctctcccacatcaatgtctatgcctgccttgtctgtggg
aagtacttccagggccgtgggctgaagtcacacgcatacatccatagcgtgcagctgagc
caccatgtgttcctcaacctgcacacgctcaagttctactgcctgcctgacaactatgag
atcattgactcctcgcttgaggacatcacgtatgtgctcaagcccacctttacggcccag
cacattgcccacctggacaaacaggccaagctgtcccgggcttacgatggcaccacgtac
ctgcctggaatcgtggggctcaacaacatcaaggccaatgactatgccaacgctgtgctc
caggccttgtctaatgtgcctcccctgcggaattacttcctggaggaggagaactaccgg
tgcatccagcgcccacctggggacatcatgttcctgctggtgcagcggtttggggagctc
atgaggaagctctggaacccccggaatttcaaggcacatgtgtcaccccatgagatgctc
caggccgtggtgctctgcagcaagaagaacttccagatcaccaagcagggggatggggtg
gagttcctgtcctggttcctgaatgcgctgcacgcagcactgggcggcaccaagaggaag
aagaagaccattgttactgacgtgttccagggctccatgcgcatcttcaccaagaagtta
ccacaccctgatctgccggcggaggagaaggcgcagctgctgcagaacagcgagtaccaa
gagcgtgtggtggagtccacgttcctgtacctgaccctggacctgcccacggcgccgctc
tataaggacgagaaggagcagctcattatcccccaggttcccctgttcagcatcctggcc
aagttcaacggcagcaccgagaaggagtacaagacctacaaggagaacttcctgaagcgt
tttcagctgacacgcctgcccccctacctcatcttctgcatcaagcgcttcaccaagaac
aacttctttgtggagaagaatcccactattgtcaacttccccatcacgaatgtggacctg
cgggaatacctatcggaggaggtacaggctgcgcatgcccacaccacctatgacctcatc
gccaacatcgtgcacgatgggaagccctcggagggctcctaccgtatccacgtcctgcac
catggcacagggaagtggtacgagctgcaggacctgcaggtgactgacatcctgccccag
atgatcaccctgtctgaagcttacatccagatctggaagcgacgtgaggaggatgagacc
aaccaacaaggtgcctga
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