Cinclus cinclus (white-throated dipper): 134054799
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Entry
134054799 CDS
T10813
Symbol
SNRNP200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase isoform X1
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134054799 (SNRNP200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccic03041
]
134054799 (SNRNP200)
Enzymes [BR:
ccic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
134054799 (SNRNP200)
Spliceosome [BR:
ccic03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
134054799 (SNRNP200)
Complex C
U5 SnRNP specific factors
134054799 (SNRNP200)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
DUF603
Hikeshi-like_C
Motif
Other DBs
NCBI-GeneID:
134054799
NCBI-ProteinID:
XP_062366763
LinkDB
All DBs
Position
29:1213761..1285871
Genome browser
AA seq
2136 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTK
PQMQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEVELLLGPTDDTRYHVLVNLGKKIT
DYGGDKDIQNMDDNIDETYGVNVQFESDEEEGDEDVYGEVRDEASDDDLEGDEAVVRCTL
SANLVASGELMSSKKKELHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTAGDDR
ECENQLVLLLGFNTFDFIKVLRQHRVMILYCTLLASAQSEAEKERIMGKMEADPELSKFL
YQLHETEKEDLIREERSRRERVRQSRMDTDLESLDLEQAGEALAPRQVLDLEDLVFAQGS
HFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKAFGADEQLVSVEKLPKYAQAGFEGFKT
LNRIQSKLFRAALESDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVEEFKIIY
IAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKG
GERTYTQLVRLVILDEIHLLHDDRGPVLESLVARAIRNIEMTQEDVRLVGLSATLPNYED
VATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQ
VLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPY
GFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGR
WTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVAKLPDM
LNAEAVLGNVQNAKDAVNWLGYTYLYIRMLRSPTLYGISHDDLKADPLLEQRRLDLVHTA
ALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNETVQTYNQLLKPTLSEIELFRVFSL
SSEFRNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMAD
MVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFKKLPEEVV
KKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKV
ELTVAPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLVTFFVPVFE
PLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESL
YQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYIT
PMEALAEQVFMDWYEKFQERLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWK
QRKNVQNVNLFIVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDV
AHWLGCSATATFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAIMKHSPKKPVL
VFVPSRKQTRLTAINILTTCASDVQRHRFLHCAEKDLVPYLEKLSDPTLKETLVNGVGYL
HEGLTAMERRVVEQLFSSGAVQVMVASRSLCWGMNISAHLVIIMDTQYYNGKIHAYVDYP
IYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEI
VTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGVSHRHLSDHLSELVEQTLSDLEQSK
CISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLLEIISNAAEYENIPI
RHHEDNLLRQLSQKVPHKLTNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAI
RLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVE
SVFDIMEMEDEERTALLQLPEAQIADVARFCNRYPNIELSYEVGDRDSIRSGGPVVVLVQ
LEREEEVTGPVIAPLFPQKREEGWWVVIGDSKSNSLISIKRLTLQQKAKVKLDFVAPAAG
TQHYTLFFMSDAYMGCDQEYKFSVDVKEAESDSESD
NT seq
6411 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgtgaccgcccgtagcctgcagtacgaatacaaggcgaactccaaccttgtt
ctccaagccgaccgctctctgattgaccgcacacgccgggatgagcccacgggggaggtg
ctgtccctggtggggaagctcgaggggacacgcatgggggacaaggcccagaggaccaaa
ccccagatgcaggaggagagaagggccaagaggaggaagcgggatgaggacaggcacgac
atcaacaagatgaaggggtacacgctgctgtccgagggcatcgatgagatggtcggcatc
atctacaaacccaagaccaaggagacccgcgagacctacgaggtcctgctcagcttcatc
caggcagccctgggggaccagccgcgggacatcctgtgcggcgctgccgacgaggtgctg
gccgtgctgaagaacgagaagctgcgggacaaggagcgccggaaggaggtggagctgctg
ctgggccccacggacgacacgcgctaccacgtgctggtcaacctgggcaagaaaatcacg
gactacggaggggacaaggacatccagaacatggatgacaacattgacgagacctacggg
gtgaacgtgcagttcgagtccgacgaggaggagggggacgaggacgtgtacggggaggtt
cgggacgaggcctcggacgatgacctggagggcgacgaggccgtggtgcgctgcacgctg
tcggccaacctggtggcatccggggagctgatgagctccaagaagaaggagctgcacccc
cgggacatcgacgccttctggctgcagagacagctcagccgcttctacgacgacgccatc
gtgtcccagaaaaaagcagatgaggtcctggagatcctcaagacggccggcgatgaccgc
gagtgcgagaaccagctggttctgctgctgggcttcaacaccttcgacttcatcaaggtg
ctgcggcagcaccgcgtcatgatcctgtactgcacgctgctggccagcgcgcagagcgag
gcggagaaggagcggatcatgggcaagatggaggcggaccccgagctctccaagttcctg
taccagctgcacgagacagagaaggaggatctgatccgggaggagcgctcgcggcgggag
cgcgtgcgccagtcccgcatggacacagacctggagtccctggacctggagcaggcagga
gaggctctggctccccggcaggtgctggatctggaggatctggtgtttgcccagggcagt
cacttcatggccaacaagcggtgccagctcccggacggctccttccggcggcagcgcaag
ggctacgaggaggttcacgtgcctgccctcaaacccaaagccttcggggccgacgagcaa
ttggtttctgtggagaagctgcccaagtacgcccaggccgggttcgaggggttcaaaacc
ctgaacaggatccagagcaaactgttccgggcggcgctggagtcggatgagaacctgctg
ctgtgtgctcccaccggcgcggggaagacgaacgtggcgctgatgtgcatgctgagggag
atcggcaaacacatcaacatggacggcaccatcaacgtggaggagttcaagatcatctac
atcgcacccatgaggtccctggtgcaggagatggtcgggagcttcggcaagcgtttggcc
acctacgggatcacggtggccgagctgaccggggaccaccagctgtgcaaggaggagatc
agcgccacgcagatcatcgtgtgcacgcccgagaagtgggacatcatcacccgcaagggc
ggggagcgcacctacacccagctggtgcgcctggtcatcctggacgagatccacctcctg
cacgacgaccgcgggcccgtgctggagtcgctggtggccagggccatccgcaacatcgag
atgacgcaggaggacgtgcggctggtggggctcagcgccaccctgcccaactacgaggac
gtggccaccttcctgcgcgtggacccggccaagggcctcttctacttcgacaacagtttc
cgtcccgtgcccctggagcagacctacgtggggatcacagagaaaaaagccatcaaacgt
ttccagatcatgaacgagatcgtctacgagaaaatcatggagcacgctggaaagaaccag
gtgctggtgttcgtgcactcgcggaaggagacggggaagacggcgcgggcgatccgggac
atgtgcctggagaaggacacgctggggctgttcctgagggagggatcggcctccaccgag
gtgctcaggacggaggcggagcagtgcaagaacctggagctgaaggatctccttccctac
ggattcgccatccaccacgccgggatgacgcgcgtcgaccggaccctggtggaggatctc
tttgctgacaaacacatccaggtcctggtgtccacggccacgctggcctggggcgtgaac
ctgccggcacacacggtgatcatcaagggcacgcaggtgtacagcccggagaaggggcgc
tggacggagctgggagcgctggacatcctccagatgctgggccgtgccgggaggccccag
tacgacacgaaaggagagggaattctgatcacttcccacggggagctgcagtattacctg
tccctgctcaaccagcagctgcccatcgagagccagatggtggccaagctcccggacatg
ctcaacgccgaggccgtgctcggcaacgtccagaacgccaaggatgccgtgaactggctg
ggatacacgtacctgtacatccgcatgctgcgctcgccgacgctctacggcatttcccac
gacgatctgaaggcggatccgctcctggagcagcggcgcctggacctcgtccacaccgcc
gcgctcatgctcgacaagaacaacctggtcaagtacgacaagaaaaccgggaatttccag
gtgacggagctgggccgcattgccagccattactacatcaccaatgagacggtgcagacg
tacaaccagctgctgaaacccaccctgagcgagatcgagctcttccgtgtcttctccctg
tcctccgagttccgcaacatcaccgtgcgcgaggaggagaagctggagctgcagaagctt
ctggagcgagtccccatcccagtgaaggaaagcatcgaggagcccagtgccaagatcaat
gtcctgctccaggccttcatctcacagctgaagctggagggattcgccctcatggctgac
atggtctacgtcacccagtcggccgggaggctgatgagagccatctttgagatcgtcctg
aaccgtggctgggcccagctcaccgacaagaccctcaacctctgcaagatgatcgacaag
cgcatgtggcagtccatgtgtcccctgcgccagttcaagaagctgcccgaggaggtggtg
aagaagatcgagaagaagaatttccccttcgagcgcctctacgacctcaaccacaacgag
atcggggagctgatccgcatgcccaagatggggaagaccatccataaatacgtgcacctg
ttccccaagctggagctgtccgtgcacctgcagcccatcacccgctccacgctcaaggtg
gagctcaccgtcgctcccgacttccagtgggacgagaaggttcacggctcctccgaggcc
ttctggatcctggtggaggacgtggacagcgaggtgatcctgcaccacgaatatttcctg
ctcaaggccaaatatgcccaggacgagcacctggtgacattttttgtgcctgtcttcgag
cccctgcccccccagtatttcatcagggtggtgtcggaccgctggctctcctgtgagacc
cagcttcccgtgtccttccggcacctgatcctgccggagaagtaccctcctcccacggag
ctgctggacctgcagccgctgccggtgtcggcgctgcgcaacagcgccttcgagagcctc
taccaggacaagttccccttcttcaaccccatccagacccaagtgttcaacacggtgtac
aacagcgacgacaacgttttcgtgggagcgcccacgggcagcgggaaaacgatttgtgcg
gaattcgccatcctcaggatgctcctgcagaattccgagggacgctgcgtctacatcacc
cccatggaggccctggcagagcaggttttcatggattggtacgagaagttccaggagcgc
ctcaacaagaaggtggtgctgctcacgggggagaccagcacggacctgaagctgctggga
aaagggaacatcatcatcagcaccccggaaaagtgggacatcctgtcccggcgctggaag
cagcgcaagaacgtccagaacgtcaacctgttcatcgtggatgaagtgcacctgatcggg
ggagagaacgggcccgtgctggaggtgatctgctcgcgcatgcgctacatctcgtcgcag
atcgagcggccgatccgcatcgtggcgctcagctcgtcgctgtccaacgccaaggacgtg
gcgcactggctgggctgcagcgccacggccaccttcaacttccaccccaacgtgcgcccc
gtgcccctggagctgcacatccagggtttcaacatcagccacacgcagacccggctgctg
tccatggccaagcccgtgtaccacgccatcatgaagcactcgcccaaaaaacccgtcctg
gtcttcgtcccgtcccggaagcagacgcggctgacggccatcaacatcctgaccacctgc
gcctccgacgtccagcgccacaggttcctgcactgtgccgagaaggacctggtgccgtac
ctggagaagctgagcgaccccaccctgaaggagacgctggtgaacggggtcggatacctg
cacgaggggctgacagccatggagagacgcgtggtggaacagctcttcagctctggagcc
gtgcaggtgatggtggcctcgcgcagcctctgctggggcatgaacatctcggcccacctg
gtgatcatcatggacacgcagtactacaacggcaagatccacgcgtacgtggattacccc
atctacgacgtgctgcagatggtgggccacgccaaccggccgctgcaggacgacgagggc
cgctgtgtcatcatgtgccagggctccaagaaggatttcttcaagaagttcctgtacgag
cctctgccggtggagtctcacctggaccactgcatgcacgaccacttcaacgccgagatc
gtcaccaagaccatcgagaacaagcaggacgccgtggactacctgacctggaccttcctg
taccgcaggatgacccagaaccccaactactacaacctgcaaggcgtgtcccaccggcac
ctgtcggatcacctgtcggagctggtggagcagaccctcagtgacctggagcagtccaag
tgcatcagcatcgaggacgagatggacgtggccccgctcaacctgggcatgatcgcagcc
tactactacatcaactacaccaccatagaactgttcagcatgtcgctcaacgccaagacc
aaggtgcgggggctgctggagatcatctccaacgccgccgagtacgagaacatccccatc
cggcaccacgaggacaacctgctgcgccagctgtcccagaaggtgccccacaaactgacc
aaccccaaattcaacgacccccacgtcaagaccaacctgctgctccaggcccacctgtcc
cggatgcagctgagcgccgagctgcagtcggacaccgaggagatcctgagcaaggccatc
cggctgatccaggcctgtgtggacgtgctctccagcaatggctggctgagcccggcgctg
gccgccatggagctggcccagatggtcactcaggccatgtggtccaaggactcgtacctg
aagcagctgccccacttcacctctgagcacatcaaacgctgcacggacaagggcgtggag
agcgtgtttgacatcatggagatggaggacgaggagcgcacggcgctgctgcagctgccc
gaggcacagatcgccgacgtggcgcggttctgcaaccgctaccccaacatcgagctgtcc
tacgaggtgggggacagggacagcatccgcagtggtggtcccgtggtggtgctggtgcag
ctggagcgggaggaggaggtcacggggccagtgatcgcccccctgttcccacagaagcga
gaggagggctggtgggtggtgatcggggactccaagtccaacagcctcatctccatcaaa
cgcctgacgctgcagcagaaggccaaggtgaagctggatttcgtggccccagcagcaggc
acgcagcactacacgctgttcttcatgagcgacgcctacatgggctgtgaccaggagtac
aagttcagtgtggacgtcaaggaggccgagagcgactctgagtctgactga
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integrated database retrieval system
