KEGG   Cinclus cinclus (white-throated dipper): 134054865
Entry
134054865         CDS       T10813                                 
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain
  KO
K19719  collagen type II alpha
Organism
ccic  Cinclus cinclus (white-throated dipper)
Pathway
ccic04510  Focal adhesion
ccic04512  ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:ccic00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    134054865 (COL2A1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    134054865 (COL2A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:ccic00536]
    134054865 (COL2A1)
Glycosaminoglycan binding proteins [BR:ccic00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   134054865 (COL2A1)
SSDB
Motif
Pfam: Collagen COLFI VWC
Other DBs
NCBI-GeneID: 134054865
NCBI-ProteinID: XP_062366842
LinkDB
Position
30:complement(3419321..3437702)
AA seq 1607 aa
MGLKIGQDRFRVPPPALVPVVAGGGPGEGSGGPARLGGRGRVRGHRGKVRGARRGRPGSG
YSSGGRRGRDLSGAAGPSGHCRPRARIGRSRFAMPGHRPAPGGHRSVRSGHSTEPAATSA
VPGAAPRPGLLLLLLLLCLAAAAAAQDRDLPEAGSCLQDGHRYSDKDVWKPEPCRICVCD
TGTVLCDEIICEELRDCPSPEIPFGECCPICPTEQPSGQPGPKGQKGEPGDIKDVVGPRG
PPGPQGPAGEQGQRGDRGEKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFA
AQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGSPGPQGFQGNPGEPGEPGAAGPMG
PRGPPGPPGKPGDDGETGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGVKG
EAGAPGAKGESGSPGESGSPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPPGPVG
PAGAPGFPGAPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPAGAPGNPGTDGIPGAKG
SAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGETGPTGPQG
APGPAGEEGKRGARGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPAGLAG
PKGATGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPTGAPGEDGRPGPPGPQGARGQPG
VMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPG
PSGFQGLPGPPGPPGESGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRG
LPGTPGTDGPKGATGPAGPSGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPG
KDGARGLTGPIGPPGPAGPNGEKGESGPPGPSGAAGARGAPGERGEPGAPGPAGFAGPPG
ADGQPGAKGEQGEPGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPG
AAGRVGPPGPNGNPGPPGPPGSAGKDGPKGARGDAGPPGRAGDPGLQGPAGPPGEKGEPG
EDGPAGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGSAGDRGPPG
PVGPPGLTGPAGEPGREGNPGSDGPPGRDGAAGVKGDRGETGPVGAPGAPGAPGAPGPVG
PTGKQGDRGETGAQGPMGPSGPAGARGMPGPQGPRGDKGEAGEAGERGLKGHRGFTGLQG
LPGPPGPSGDQGAAGPAGPSGPRGPPGPVGPSGKDGSNGMPGPIGPPGPRGRSGEPGPAG
PPGNPGPPGPPGPPGTGIDMSAFAGLGQPEKGPDPGRYMRADEAAPGLRPHDAEVDATLK
ALNNQIESIRSPEGSRKNPARTCRDIKLCHPDWKSGDYWIDPNQGCTLDAIKVFCNMATG
ETCVYPSPGSIPRKNWWSSKAKEKKHVWFAETISGGFHFSYGAEDLAPNTANIQMTFLRL
LSTEGSQNVTYHCRNSVAYLDEESGSLRKALLIQGSNDVEIRAEGNSRFTYSVLEDGCTK
HTGKWGRTVIEYRSQKTSRLPIVDIAPMDIGGPEQEFGVDLGPVCFL
NT seq 4824 nt   +upstreamnt  +downstreamnt
atgggtttgaaaattgggcaagatcggttccgggtccctccgcccgctctcgtcccggtg
gtggccgggggagggcccggggagggctcgggagggccggcccggctcgggggccggggg
agggtccggggccaccgggggaaggtccggggggcccggcggggccggcccggctcgggt
tacagctccggggggcggcggggccgggacttaagcggggccgcggggccgagcgggcac
tgccggccccgggcgcggatcgggcgcagccgtttcgctatgcccggacaccgcccggcc
cccggcggccaccgctcggtccgcagcggccacagcacggagcccgcagccaccagcgcg
gtccccggagccgccccccggccggggctcctgctcctcctcctcctcctctgcctcgcc
gcggccgccgcagcgcaggaccgagacctccccgaggctggcagctgcctgcaggacggg
caccgctacagcgacaaggacgtgtggaagccggagccgtgccggatctgcgtgtgcgac
acggggacagtgctgtgcgacgaaatcatctgcgaggagctgcgggactgccccagcccc
gagatccccttcggagagtgctgccccatttgccccaccgagcagcccagcggacagccc
ggccccaagggacaaaaaggtgaacccggtgacatcaaagatgtcgtaggaccccgagga
cccccaggcccgcagggccccgcaggtgagcagggacagcgaggggatcgcggcgagaag
ggtgagaagggcgcccctggcccacggggcagggatggggaacctggaaccccaggaaat
cctgggccccccggaccccccggccccccaggaccccctggcttgggggggaacttcgcc
gctcagatggccgggggcttcgatgagaaggccggaggggctcagatgggcgtcatgcag
ggtcccatgggccccatgggaccccgaggcccccccggcccttccggctcccccggaccc
caaggattccaaggcaaccccggcgagcccggcgagccaggcgctgctggtccgatgggt
ccccggggacctccgggacctcctggcaaacccggtgatgacggcgagactggcaaaccc
gggaaatcgggcgagcgtggcccccccggcccccagggcgctcgtggcttccccgggacc
cccggcctgcctggagtcaaaggccacaggggctacccaggcctggatggcgtcaaggga
gaggcgggagcacctggagctaagggcgagtccggctcccccggcgagagtggctcccca
gggcccatgggtccccgcgggctgcctggagaacgaggacgcccgggcccctcgggcgct
gcgggcgctcgtggaaatgacggcctcccgggcccagccggaccacctggtcccgtcggc
cccgcaggagcccccggcttccctggtgcccccggctccaagggtgaagcgggtcccacc
ggcgcacgaggacccgaaggtgcccaggggccccgcggagaatccgggacccccggctct
cccggccccgccggtgcccccggaaaccccgggaccgacggcatccccggagcaaaggga
tcggcgggagctccaggcatcgcgggcgctccaggattccccggcccccgcggcccaccc
ggaccccagggagccactggcccgctgggccccaagggacagacgggcgaacccggcatt
gcaggattcaaaggcgagcagggacccaagggagagacgggccccacaggaccccaaggc
gcccccggaccagccggggaggaagggaagagaggagcccgcggagaacccggagctgct
ggacctttgggaccacctggagagaggggtgctcccggcaaccgtggcttccctgggcag
gatgggctggccggccccaagggggccccgggcgagcgtggccctgctggcctggccggc
cctaaaggagccaccggcgaccccggacgccctggagagcctggcctgcctggagccagg
ggtctcacgggccgccctggggatgctgggcctcaaggcaaagtcggccccacgggtgcc
cccggtgaggacggacgccctggaccccccggcccccagggggctcggggccagcctggc
gttatgggattccctggtcccaaaggtgccaatggtgagcctggaaaagctggtgaaaaa
ggacttcctggagcaccggggctaaggggacttcctggcaaggacggagagactggagcc
gccggacccccgggacctgccggcccagcaggagagaggggagagcaaggagcccccggc
ccctctggcttccaggggctgccagggccaccaggtccccccggtgagagcggcaaaccc
ggagatcagggcgttcctggagaagctggagccccggggcttgtgggtcccaggggcgag
cgcggattccctggtgagcgcggctctcccggcgcccagggcctgcaggggccccgcggc
ctccccggcacccctggcaccgacggacccaagggtgccaccggccccgccggccccagc
ggtgcccagggacccccggggctgcaggggatgcctggggagagaggagctgctggcatc
gccggtcccaagggagacaggggagacgtcggagagaagggacctgagggggcccccgga
aaggatggagctcgcggtctgaccggtcccatcggcccccctggccctgctggccccaac
ggtgaaaagggcgagtctggcccccctggcccatctggagccgccggtgcccgcggtgcc
cctggagagcgtggagagcccggagcccccggccctgccggattcgctgggcccccgggt
gccgatggccagcctggagccaagggcgaacagggggagcccggccagaagggcgacgct
ggagcccccgggcctcagggtccttctggggctcctggaccacagggccccactggtgtc
accggtcccaaaggagcccggggcgctcagggacccccaggagccaccggattccctgga
gctgccggacgtgttggaccccctggtccaaatggtaaccccggccctcccgggcccccc
ggctccgcaggcaaggatggccctaagggcgcccggggcgatgcaggacccccgggccga
gcaggggacccggggctgcagggccccgctggcccccccggcgagaagggcgagcctggc
gaggacggccccgcgggtccagacggtcccccaggtccccaggggctggcagggcagcgc
ggcatcgtggggctgccggggcagcgtggcgaacgtggattcccggggctgcccggaccc
tcgggagagcctggaaaacagggagcacctggatctgccggtgaccggggaccccccggg
cccgtgggacccccggggctgacggggccggccggagagcccggcagagagggaaatccc
ggctctgacggacccccaggcagggatggggcggctggagtgaagggcgatcgtggggag
actggccccgtgggcgctcctggagctcccggcgctcctggcgctccgggccccgtggga
cccactggaaaacaaggagacagaggagagacgggtgcccagggtccaatgggtccctcc
ggccctgctggtgctcgggggatgccgggtccccaggggccacgcggtgacaaaggcgag
gcgggcgaggccggcgagcgcggcctgaaggggcaccggggcttcaccgggctccagggg
ctgcctgggccccccggtccttctggagaccagggtgctgccggacctgcaggcccctct
gggcccaggggtcccccaggtcccgtgggtccctcgggcaaggacggctccaatgggatg
cctggacccatcggcccccctggaccccgtgggaggagcggcgagcccggcccagcgggc
cctcccgggaaccccggcccgcccggcccccccgggccccccggcaccggtatcgacatg
tcggcgtttgcggggctggggcagcccgagaagggccccgaccccgggcgctacatgcgg
gcagacgaggcggcaccggggctgcggccacacgacgccgaggtggatgccacgctcaag
gccctcaacaaccagattgagagcatccgcagccccgagggctcccgcaagaacccggcc
aggacctgcagagacatcaaactctgccaccccgactggaagagtggtgattactggatc
gaccccaaccagggctgcaccctggatgccatcaaggtcttctgcaacatggccacgggg
gagacgtgcgtgtatcccagccccggcagcatccccaggaagaactggtggagcagcaaa
gccaaggagaagaagcacgtctggttcgctgagaccatcagcggcggcttccacttcagc
tatggcgctgaggacctggctcccaacacggccaacatccagatgaccttcctgaggctg
ctgtccaccgagggctcccagaacgtcacctaccactgccgcaacagcgtggcctacctg
gatgaggagtcgggcagcctgaggaaggcgctgctcatccagggctccaacgatgtcgag
atccgcgccgagggtaacagcaggttcacctacagcgtgctggaggacggctgcacgaaa
cacacggggaaatggggcaggactgtcatcgagtaccgctcacagaagacctcgcgcctg
cccatcgtggacattgcacctatggacattgggggccccgagcaggagttcggggtggac
ctcggccccgtttgcttcttgtaa

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