Cinclus cinclus (white-throated dipper): 134054867
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Entry
134054867 CDS
T10813
Symbol
SCN8A
Name
(RefSeq) sodium channel protein type 8 subunit alpha isoform X1
KO
K04840
voltage-gated sodium channel type VIII alpha
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
134054867 (SCN8A)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ccic04040
]
134054867 (SCN8A)
Ion channels [BR:
ccic04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
134054867 (SCN8A)
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Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
PKD_channel
IQ_SCN5A_C
ATP-synt_B
GPHH
IQ
Motif
Other DBs
NCBI-GeneID:
134054867
NCBI-ProteinID:
XP_062366844
LinkDB
All DBs
Position
30:complement(2588614..2642350)
Genome browser
AA seq
1987 aa
AA seq
DB search
MAARLLAPPGPESFKPFTPESLANIEKHIAELKKKQRSKQDSSHRDDDEDSKPKPNSDLE
AGKNLPFIYGDIPKGLVAVPLEDFDPYYMTQKTFVVLNRGKTLFRFSATPALYILSPFNL
FRRIAIKILIHSVFSMIIMCTILTNCVFMTFSNPPEWSKNVEYTFTGIYTFESLVKIIAR
GFCIDGFTFLRDPWNWLDFSVIMMAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTI
VGALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCVIWPINVNETFLDNGSRGF
DWEEYTNNMSNFYIIPGAPDPLLCGNSSDAGQCPEGYTCMKAGRNPNYGYTSFDTFSWAF
LALFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFVGSFYLVNLILAVVAMAYEEQNQA
TLEEAEQKEAEFKAMLEQLKKQQEEAQAAAMVTSAGTVSEEAVEDDGGGRMSRSSSEISK
LSSKSAKERRNRRKKRKDKELSEGDEKCDNEKVFKSESEDGMRRKAFRLPDNRLGRKFSI
MNQSLLSIPGSPFLSRHNSKSSIFSYKGRFREPASENEFADDEHSTVEESEGRRDSLFIP
IRGRDRRSSYSGYSGYSQASRSSRVFPALRRSLKRNSTVDCNGVVSLIGGPPSSLHGGRI
LPEVEAPSPARGGTTEIEIRKKPGGSLLVSMDQVNASYGRKDRTNSVMTGLTNTLVEELE
ESQRKCPPCWYKFANTFLIWECHPYWMKLKEIVNLIVMDPFVDLAITICIVLNTLFMAME
HHPMTPEFEHVLSVGNLVFTGIFTAEMFLKLIAMDPYYYFQEGWNIFDGFIVSLSLMELS
LADVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVG
MQLFGKSYKECVCKINPECELPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAGQAMC
LIVFMMVMVIGNLVVLNLFLALLLSSFSADNLAATDDDGEMNNLQISVIRIKKGIAWTKA
KVREFMQAHFKQREADEVKPLDELYDKKVNCIANHTGADINRDIDFQKNGNGTTSGIGSS
VEKYIIDEDHMSFINNPNLTVRVPIAVGESDFENLNTEDFSSDTDPDGSKEKLDESSSSE
GSTIDIKPEVEEVPVEAPEEYLDPDACFTEGCMQRCKCCQVNIEEGLGKSWWTLRKTCFL
IVEHNWFETFIIFMILLSSGALAFEDIYIEQRKTIRTILEYADKVFTYIFILEMLLKWCA
YGFVKFFTNAWCWLDFLIVAVSLVSLIANALGYSELGAIKSLRTLRALRPLRALSRFEGM
RVVVNALVGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKYHYCFNETAEHRFEIDVVNNK
TDCEALMPPNSTEIRWKNVKINFDNVGAGYLALLQVATFKGWMDIMYAAVDSRKQEEQPK
YEDNIYMYIYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAMK
KLGSKKPQKPIPRPLNRVQGAVFDFVTQQAFDIVIMMLICLNMVTMMVETDTQSKQMEDI
LYWINFVFVIFFTCECVLKMFALRHYYFTIGWNIFDFVVVILSIVGMFLAEIIEKYFVSP
TLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIFSIFGMSNF
AYVKHEAGIDDMFNFETFGNSMICLFQITTSAGWDGLLLPILNRPPDCDLDKEHPGSGFK
GDCGNPSVGIFFFVSYIIISFLIVVNMYIAIILENFSVATEESADPLSEDDFETFYEIWE
KFDPDATQFIEYSKLADFADALEHPLRVPKPNTIELIAMDLPMVSGDRIHCLDILFAFTK
RVLGDSGELDILRQQMEERFVASNPSKVSYEPITTTLRRKQEEVSAVVIQRAYRARLARR
GFISRRSATTKLENGGATREKKEGTPSTASLPSYDSVTKPEKEKQQRAEEGRREKAKRQK
DAREHKC
NT seq
5964 nt
NT seq
+upstream
nt +downstream
nt
atggcagcacggctgctcgcaccaccaggccccgagagttttaaacccttcactccggag
tctctggccaacattgagaaacacattgcagagctgaagaagaagcaacgctccaagcag
gacagcagccaccgggacgacgatgaagacagcaaaccaaaaccaaacagtgaccttgag
gcagggaagaatttgcctttcatctacggggacatccctaaagggctggttgctgtgcca
ctggaggactttgacccttattatatgacccagaaaacctttgtagtactaaacagaggg
aaaacactcttcagatttagtgccacacctgccttgtacattttaagtccttttaatctg
tttagaagaatagctattaaaattttgatacattcagtatttagcatgatcattatgtgc
actattttgaccaactgtgtattcatgacttttagtaacccgccagaatggtcaaagaat
gtggagtacacattcactgggatttatacatttgaatcactggtgaaaatcattgccagg
ggtttctgtatagatggattcaccttcctgagggatccctggaactggctggatttcagc
gtgatcatgatggcatatgtcacagagtttgtggaccttgggaatgtctcagcattgaga
actttcagagttctccgagctttgaaaactatctctgtaattccaggcttgaagaccatc
gtgggtgccctcatccagtctgtgaagaagctgtcagatgtgatgatcctgacagttttc
tgtctcagtgtctttgccctcattgggctccagctgttcatgggcaatttaaggaacaag
tgtgtgatctggccaattaatgtcaacgaaaccttcctggataatggctccaggggcttt
gactgggaggaatacaccaacaatatgtcaaatttttacatcattcctggcgcccctgac
cctttgctctgtggtaacagctcagatgcagggcaatgcccagagggatacacgtgcatg
aaggcaggacggaaccccaactacggctacacgagcttcgacaccttcagctgggctttc
ctggctttgtttcgcctcatgactcaggacttctgggaaaatttgtatcagttgacttta
cgagcggcaggaaaaacctacatgatcttctttgtgctggtgatctttgtgggatccttc
tacctggtgaacctgattttggctgtggtggccatggcctacgaggagcagaaccaggcg
accctggaggaggcagagcagaaggaggcagaattcaaggccatgttggagcaattgaaa
aagcaacaggaagaagcacaggctgctgccatggtcacctcggcagggacggtctctgaa
gaggctgtggaagatgatggtggggggaggatgtccaggagctcctcagagatttccaaa
ctcagttccaagagtgccaaggagcgtcgcaacaggaggaagaagcggaaggacaaggag
ctgtcggaaggagatgagaagtgtgacaatgagaaggtgttcaagtcagagtctgaggat
ggcatgaggaggaaagccttcaggctgccggataacaggctgggaaggaaattttccatc
atgaaccagtctctcctcagcatcccgggctccccgttcctctcccgccacaacagcaag
agcagcatcttcagctacaagggtcgcttccgcgagccggcctcggagaacgaattcgcc
gacgacgagcacagcacggtggaggagagcgagggaaggagggactcgctcttcatcccc
atccgcggccgcgaccggcgcagcagctacagcggctacagcggctacagccaggccagc
cgctcctcgcgcgtcttccccgcgctgcgccgcagcctcaagaggaacagcaccgtggac
tgcaacggcgtcgtgtccctcatcgggggtcccccctccagcctgcacggggggcgcatc
ctgcccgaggtagaggcgccgagcccggcccgcgggggtaccactgaaattgaaatcagg
aagaagcctggcgggtctctcttggtctccatggatcaggtgaatgcatcctatggaagg
aaggaccggaccaacagtgtcatgactgggttgaccaacacccttgttgaggagctggaa
gagtcccagaggaagtgtcccccttgctggtacaaatttgccaacacgttcctgatctgg
gaatgccacccctactggatgaagctgaaggagatcgtgaatttaattgtgatggatcct
tttgttgacttggccatcaccatctgcatcgtgctgaacacgttgttcatggccatggag
caccaccccatgacccccgagttcgagcacgtgctctccgtaggaaatctggttttcact
gggattttcacagcagaaatgttcctgaagctcattgcaatggatccatactattatttt
caagaaggctggaacatctttgatgggtttattgtttccctcagtttaatggagctgagt
ttggcagatgtggaaggactttccgtgctgcgatctttcagactgctgagagtcttcaaa
ctggccaaatcctggcccactctgaacatgctgataaaaatcatcggtaactcagtgggt
gccttggggaatttgaccttggtgctggccatcatcgtgtttatcttcgccgtggtggga
atgcagctctttggcaaaagctacaaggaatgtgtgtgcaagatcaatccggagtgtgag
ctgccccgctggcacatgcacgatttcttccactccttccttattgtcttccgtgtgttg
tgtggggagtggattgagaccatgtgggattgtatggaagtggcaggacaggccatgtgc
ttgattgtcttcatgatggtcatggtcatcggaaatttagtggtactgaacctgttcttg
gccttgctgctgagctccttcagcgccgacaacctggcggccacggacgacgacggcgag
atgaacaacctgcagatctcggtgatccgcatcaagaaaggcatcgcctggaccaaggcc
aaggtcagggagttcatgcaggctcacttcaagcagagagaggccgacgaggtgaaaccc
ttggacgagctctacgacaagaaggtgaactgcatcgccaaccacaccggggccgacatc
aacagggacatcgacttccagaagaacggcaacggcaccaccagcggcatcggcagcagc
gtggagaagtacatcatcgacgaggaccacatgtccttcatcaacaaccccaacctcacc
gtgcgcgtccccatcgccgtgggggagtccgacttcgagaacctcaacacggaggatttc
agcagcgacacggatcccgatggcagcaaggagaagctggatgagagcagctcctccgag
ggcagcaccattgacatcaagcctgaagtggaagaagtccctgtggaggccccggaggag
tacctggaccccgatgcctgcttcacagaaggttgtatgcagcgctgcaagtgttgtcag
gtcaatattgaggaggggctgggaaagtcctggtggaccttgaggaaaacttgtttctta
attgtggagcataattggtttgagactttcatcatctttatgatcctcctgagcagcggt
gctctggcttttgaggacatttacatcgagcagaggaaaaccatcaggaccatcctggaa
tatgcagacaaggtcttcacctacattttcatcctggagatgctgctcaagtggtgtgct
tatggatttgtgaaattcttcaccaatgcctggtgctggctggattttctcatcgtggct
gtctctttagtcagccttatagctaatgccctgggctactcggaactaggtgccataaaa
tcccttaggacactaagagccttgaggcctttaagagcgttgtcccgatttgaggggatg
agggtggttgtcaacgccttggttggcgctatcccttccattatgaatgtcttgttggtc
tgccttatcttctggctgattttcagcattatgggggttaacctgtttgccgggaaatat
cattactgctttaatgaaacagctgagcatcgctttgagatagatgttgttaacaacaag
acagactgcgaagctctgatgcctcccaactccacggagatccgatggaagaatgtgaaa
attaacttcgacaacgttggggcgggatatctggctcttctgcaagttgccacgttcaag
ggctggatggacatcatgtatgcagctgtagattccagaaagcaagaagaacaacccaag
tacgaggacaacatttacatgtacatttattttgttatcttcatcatcttcgggtccttc
ttcaccctgaacttgttcattggtgtcatcatcgacaacttcaatcaacaaaagaaaaag
tttggaggtcaagatattttcatgacagaagaacaaaagaagtattacaatgccatgaaa
aaactgggctcaaagaagcctcaaaaacccattccccgacctctgaaccgcgtccaaggc
gccgtgttcgacttcgtcacccagcaagccttcgacatcgtcatcatgatgctcatctgc
ctcaacatggtgaccatgatggtggagacagacactcaaagcaagcagatggaggacatc
ctctactggatcaacttcgtgttcgtcatcttcttcacctgcgagtgcgtgctcaagatg
ttcgccctgcgccattattacttcaccatcggctggaacatcttcgacttcgtggttgtc
attctgtccatcgtggggatgttcctggctgaaatcattgagaagtacttcgtgtcgccc
accctgttccgagtgatccgcctggctcgcatcggccgcatcctgaggttgatcaaggga
gccaaagggatccgcacgctgctttttgccttaatgatgtccctgcccgccttgttcaac
atcggcctcttgctcttcttggtcatgttcatcttctccatcttcggcatgtccaacttc
gcctacgtcaagcacgaggccggcatcgacgacatgttcaacttcgagacttttggcaac
agcatgatctgcttgttccagatcaccacctcggcaggctgggacgggctcctgctgccc
atcctgaaccggccgccggactgcgacctggacaaggagcacccgggcagcggcttcaag
ggggactgcggcaacccttcggtggggatattcttcttcgtgagctacatcatcatctcc
ttcctgatcgtggtcaacatgtacatcgccatcatcctggagaacttcagcgtggccacg
gaggagagcgcggatccgctgagcgaggacgacttcgagactttctacgagatctgggag
aagttcgaccccgacgccacgcagttcatcgagtacagcaagctggcggatttcgccgac
gctttggagcatcccctccgcgtgccaaaacccaacaccatcgaactcatcgccatggac
ctgcccatggtaagtggagacaggattcactgtttggacatcctgttcgctttcaccaaa
cgcgtgctgggggacagcggggagctggatatcctgagacaacaaatggaggagaggttt
gtggcttccaacccttccaaagtgtcttacgagcccatcaccaccacgctgaggcgcaag
caggaggaggtgtcggcggtggtgatccagagggcttacagggctcgtttggcacggcgg
ggtttcatcagccgaaggtctgccaccaccaaactggagaacgggggagctaccagggag
aaaaaagaaggaaccccctccacggcgtccctgccctcctacgacagcgtcaccaaaccc
gagaaggaaaaacaacaacgggccgaggaggggaggagagaaaaggcaaagagacaaaaa
gacgccagggaacacaagtgttga
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