Cinclus cinclus (white-throated dipper): 134055038
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Entry
134055038 CDS
T10813
Symbol
SMARCD1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 isoform X1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
134055038 (SMARCD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccic03021
]
134055038 (SMARCD1)
03036 Chromosome and associated proteins [BR:
ccic03036
]
134055038 (SMARCD1)
Transcription machinery [BR:
ccic03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
134055038 (SMARCD1)
Chromosome and associated proteins [BR:
ccic03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
134055038 (SMARCD1)
PBAF complex
134055038 (SMARCD1)
GBAF(ncBAF) complex
134055038 (SMARCD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
134055038
NCBI-ProteinID:
XP_062367137
LinkDB
All DBs
Position
30:complement(2828035..2834761)
Genome browser
AA seq
511 aa
AA seq
DB search
MAARAGFQSGPASGGGAGTAPGAALGPGAPGGAVRMGPAPGQGLYRSPLPGAAYPRPGML
PGGRLAPQGPAMGPPGYGGSPAVRPALAQAGLDQARKRPAPQQLQQVQPQAVPNRNHNAK
KKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRI
FISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSLVIEL
DKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARL
LGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQRLHAL
LMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIAALDNKI
HETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAEFYFQ
PWAQEAVCRYFYSKVQQRRQELEQALGIRNT
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcgggccgggttccagtcggggcctgcgagtggcggcggtgccgggaccgcg
cccggggccgcgctgggcccgggagcgccgggcggggcggtgcgcatgggcccggcgccg
gggcagggcctgtatcgctcgccgctgcccggagccgcctacccgcgccccgggatgctg
ccgggcggccgcctggcgccgcagggcccggccatgggtcctcccgggtacggtggaagc
cccgcggtgcggcccgcgctggcgcaggccgggctggaccaggctcgcaagcggccggcg
ccgcagcagcttcagcaggtgcagccgcaggcggtgcccaaccgcaaccacaatgccaag
aagaagaagatggcagataaaatcctcccacagcggatccgtgagctcgtgcccgaatcc
caggcctacatggacttgttggcctttgagaggaagctggaccagaccatcatgaggaag
cgcttggatatccaggaggctctgaaacgccccatcaagcaaaagcgaaagctgcgtatt
tttatctccaacaccttcaacccagccaagtcagacgcagaggatggcgaaggaaccgtc
gcctcctgggagcttcgggtggaaggacggctgttggaggattctgctctgtccaaatat
gatgccaccaagcagaaacggaaattttcgtccttctttaaatctctggtcattgaactt
gataaagacctgtatggccctgacaatcacctagtagagtggcacaggactgctacgact
caggagacagatggcttccaggtgaagaggccaggggatgtaaacgtgcgctgcactgtc
ctgctgatgctggattatcagcctccccagttcaaactggatccacgcctggctcggctc
ctgggcatccacacccagacccggcccgtgatcatccaggccctgtggcagtacatcaag
acccacaagctgcaggacccccacgagagggagtttgtcatctgtgacaagtacctgcag
cagatatttgagtcgcagcggatgaagttctctgaaatcccacaaaggcttcacgccttg
ctgatgcccccagaaccgatcatcatcaatcatgtgatcagtgttgacccgaatgaccag
aagaaaacagcctgctatgacattgatgtggaggtggacgataccctgaaaactcagatg
aattcctttctgctctccacagccagtcaacaggaaattgctgctctggataacaagatc
catgaaacaattgagaccatcaaccagctgaagacacagcgtgagttcatgctgagcttt
gcccgagatcctcagggcttcatcaacgactggctccagtcccagtgccgggatttgaag
acaatgactgatgtggttgggaatcccgaggaggagcgcagagccgagttctacttccag
ccctgggcgcaggaagccgtgtgccgatacttctactccaaggtgcagcagagacggcag
gaattggagcaggccctggggatccggaacacatag
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