Cinclus cinclus (white-throated dipper): 134055064
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Entry
134055064 CDS
T10813
Symbol
SMG5
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG5 isoform X1
KO
K11125
protein SMG5
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
134055064 (SMG5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccic03019
]
134055064 (SMG5)
03032 DNA replication proteins [BR:
ccic03032
]
134055064 (SMG5)
Messenger RNA biogenesis [BR:
ccic03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
134055064 (SMG5)
mRNA cycle factors
Common to processing body (P body) and stress granule
134055064 (SMG5)
DNA replication proteins [BR:
ccic03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
134055064 (SMG5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
134055064
NCBI-ProteinID:
XP_062367170
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All DBs
Position
31:208283..239224
Genome browser
AA seq
1025 aa
AA seq
DB search
MSQGGGAAGESGEPEAKVLHTKRLYRAVVEAVHRLDLILGNKAAYQDVFKPENISLRNKL
RELCVKLMFLHPVDYGRKAEELLWRKVYYEVIQLIKTNKKHIHSRSTLECAYRTHLVAGI
GFYQHLLLYIQSHYQLELQCCIDWTHVTDPLIGCKKPVSASEKEMEWAQMACHRCLVYLG
DLARYQNELAGVDTELLAERFYYQALSVAPQIGMPFNQLGTLAGSKYYNVEATYCYLRCI
QSEVSFEGAYGNLKRLYDKAAKMYHQLKKCETRKLSPSKKRGKDIKRLLVSFMYLQSLLQ
PKSSSLDSELTSLCQSVLEDFNLCLFYLPSPPNLSSTSEDEEEYESGYSFLPDLLIFRMV
IICLMSVHSLKRAGSKQYSAAIAFTLALFSHLINHVNIRLQAELEEGENPVPAFQSDGTD
DQEPREPVNSIDKEAVAELANHQPSEEQQKNDCKKSKKYSRLSCLRRRRHPQKADESDLS
EGFDSDSSQSSIKGSDGSESGSEKSDEEAEAAFDVETDSDMNSQESRSDLEDMEDEPGEE
GSSQGKSGPKEALENFNGPASLSTNDASIASNLQAMSTQLFQTKRCFRLAPTFTNILLKP
SSEPAALKDGIESKPCVNGDLEKPSLAEQVDVSDSEESISSNKSCRNERSLQEKLEIVTN
EGLLLTVKVFLDWLRTNTDLIIMCAQSSQSLWNRLSVLLNLLPSAAALQESGLALCDEVK
DILSDAELPDLKANLLLPEDVALRNLPPLKNAHKRFNFEQDRPIFSAVEESVVRICCIRS
FGHFITHLQGSILQFNSELGIFISIAQSEQDNLLHQAQAQFHMAAEEARRNRLMRDMAQL
RLQLEVSQLEGSLQQPKAQSAMSPYLVPDTQALCQHLALVKQLAASGRFIIIIPRTVIDG
LDFLKKENAGARDSIRYLEAEFKKGNRYIRCQKDVGKSFERHKLKRQDLDAWNLYKILDS
CKQLTVSQGSGEDDTMGMVTIITGFQLEDPSLFSVPMQSAVQAAANASIEIKNVLEFYKQ
WKEMG
NT seq
3078 nt
NT seq
+upstream
nt +downstream
nt
atgagccagggtggcggggccgctggcgagagcggagagccggaggccaaggtgctgcac
accaaacggctgtaccgggcagtggttgaggccgtgcaccggctggatctcatccttggc
aataaggcagcttatcaggatgtgttcaaaccagagaacatcagcttgaggaacaagctg
cgggagctgtgcgtgaagctgatgttcctgcatcctgtggattatggaagaaaagcagaa
gaactgctctggagaaaggtttactatgaagttatccagctcattaaaacaaataaaaag
cacatccacagccgcagtaccctggagtgtgcgtaccggactcacctggtggctggcata
ggattttaccagcaccttctgctctacatccagtctcattatcagctggagttgcagtgc
tgcatcgactggacacacgtgacagaccctctcataggctgcaagaaacctgtgtctgcg
tcagagaaggagatggagtgggcacagatggcttgtcaccgatgtctggtttatctggga
gatctagcccgctatcagaatgagctggcaggtgtggacacggagctgctggctgagcga
ttttactatcaagccctttctgttgcaccacaaattggaatgcccttcaaccaactgggg
acgttggcagggagcaaatactacaatgtggaagcaacctactgctacttacgctgcatc
cagtctgaagtgtccttcgaaggtgcctatgggaacctgaagcggctctatgacaaagca
gccaagatgtatcatcagctgaagaaatgtgaaaccaggaagttgtctccaagcaagaaa
cgaggaaaagacattaagaggttgctggtgagcttcatgtacctgcagagtcttctgcag
ccaaaaagcagctctttggattctgagctgacatctctctgccagtctgtactggaggat
ttcaacctgtgcttgttctacctgccctctcctcctaacctgagctcaactagtgaagat
gaagaagaatatgagagtggctactccttccttcctgatctcctgatctttcgcatggtg
atcatctgccttatgagtgttcacagcctcaagagggcaggttctaagcagtacagtgca
gccattgccttcacactggccctcttctctcacctgataaatcacgtcaatattcgcctc
caggctgagctagaagaaggggaaaatcctgtcccagcctttcagagtgatggcacagat
gaccaggagccccgggagcctgtgaactcaattgacaaggaagctgtagctgagttggcc
aatcatcagcctagtgaggaacagcagaagaatgactgcaagaaaagcaaaaaatactct
cgcctctcctgtctgcgccgccgccgccacccccagaaggcggatgagagcgacctgagt
gagggctttgactctgactccagccagagctccatcaagggcagtgacggctcagagagt
ggttcagagaagagtgatgaggaagcagaagctgcttttgatgtggagacagactccgac
atgaacagccaagagtctcggtctgacttggaagacatggaggatgaaccaggtgaagag
ggaagcagccaaggcaaaagtgggcccaaagaggccttagaaaacttcaatgggccagct
tccctgagcactaatgatgcaagcatagccagtaatctccaggccatgtccacccagctg
ttccagaccaaacgctgctttcgcttggctcccacgttcaccaacatcctcctgaaaccc
agcagtgaaccagctgccttgaaggatgggatagagagcaagccatgtgtcaatggagat
ctggagaagcccagcttggcagagcaagttgatgtgtctgactctgaagaaagtatttca
agtaacaaatcctgcagaaatgagcgatcccttcaggagaagttggagatcgtgaccaat
gaagggctgctgcttactgtcaaggtgttcctggactggctgaggacaaacacagacctc
atcattatgtgtgctcagagctctcagagcctgtggaacaggctatctgtgctcctgaac
cttctgccttctgctgcagccctgcaggaatcagggctggccctgtgtgatgaagttaaa
gacatcctgagtgatgctgagctcccagacctgaaggccaacctgctgctccctgaagat
gtggccctgcgcaatctcccccctctgaaaaatgcacacaagaggtttaacttcgagcag
gacaggcccattttctcagcagttgaggagtctgtcgtgcggatctgctgcattcggagc
tttggccacttcattacccacttgcaaggcagcatcctgcagttcaactcagagcttggg
atcttcatcagcatagcacagtcagagcaggacaacttgctgcaccaggcccaggcccag
tttcacatggctgcagaggaagctcgtcggaacaggctcatgagagacatggctcagctt
cgactgcagctggaagtgtctcagctggagggaagtctccagcagcccaaggcgcagtca
gccatgtctccttaccttgttccggacacccaggccctctgccagcacctggctcttgtc
aagcagctggctgctagtgggaggttcataatcattatccctcgaacagttattgatggc
ctagacttcctgaaaaaggagaacgctggtgctagggacagcattcggtatctggaggca
gaatttaagaagggaaacaggtacattcgttgccagaaagatgttgggaagagctttgag
aggcataaattgaagagacaagatttagatgcctggaatctctataaaatactggacagc
tgcaaacaattgacagtgtcgcagggcagcggagaggacgacaccatgggaatggtcacc
atcatcacaggcttccagctggaggacccgagcttgttctcagtgcccatgcagtctgcc
gtccaggcagccgccaatgccagcatagagataaaaaatgttctggagttctacaagcag
tggaaagagatgggctga
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