Cinclus cinclus (white-throated dipper): 134055452
Help
Entry
134055452 CDS
T10813
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134055452 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccic03019
]
134055452 (XAB2)
03041 Spliceosome [BR:
ccic03041
]
134055452 (XAB2)
Messenger RNA biogenesis [BR:
ccic03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
134055452 (XAB2)
Spliceosome [BR:
ccic03041
]
Complex B
Other components
Prp19-related factors
134055452 (XAB2)
Complex C
134055452 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
TPR_19
TPR_12
Suf
TPR_8
TPR_2
TPR_15
TPR_7
TPR_16
TPR_MalT
PPR
ARM_TT21
ARM_TT21_C
TPR_18
TPR_1
Motif
Other DBs
NCBI-GeneID:
134055452
NCBI-ProteinID:
XP_062367791
LinkDB
All DBs
Position
32:1896368..1909935
Genome browser
AA seq
901 aa
AA seq
DB search
MAAREEPPAAGAGSRAGSGLEQEPAAMAEPGPSAMAEAQPGAGPAAEAEPGAVADPGTGP
GPGRPELCFEDEEVQHEEELLRNPFSVRGWLRYAQARQRGPRPRLNQIYERALRELPGSY
KLWYQYLRQRRAQVKGRCPSDPAFEEANAVHERALVFMHKMPRIWLDYCQFLAEQGRITR
TRRTFDRALRALPITQHRRLWPPYLSFVRRHPLPETAVRVFRRFLKLCPEEAEQYVSYLR
SVGRLDEAAQVLARLVNDERFVSRQGKSNYQLWQELCELLSQHPDRVRSLDAGGIIRGGL
TRFTDQRGRLWGALADCYVRCGHLEKARDVYEEAVQTVMTVRDFTQVFDSYARFEESVIG
ALLDTQAQLGRGQDEEVELELRLARFERLMARRPLLLNSVLLRQNPHNVHEWHKRVALHQ
GQPDKIIQTFTEAVRTVDPQRATGRPHELWVAFARFYEDNGQLDDARSILSRATRVRFRR
VEDLAAVWCEFGELELRHQRHQEALSVLRKATALPAKRAEYFDSSEPVQNRLYKSLKVWS
MLADLEESLGTFQSTRAVYERILDLRIATPQIVINYALLLEEHGRFEDSFKAYERGIALF
RWPHVGDLWLTYLSKFVARYGGRKLERARDLFEQALDGCPPQHAKTIYLLYARLEEQFGL
ARRAMAVYERGTRAVPPAQQRDMFHIYIRRAAELFGVTHTRPIYQRAIEVLGDDAARELC
LRFADMECKLGEVDRARAIYTYCSQICDPRITGSFWQTWKEFEIRHGNEDTIREMLRIKR
SVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGLDEMKLLEQRAEALAAEAQRDTP
RPTQQVLFVRAEAPPGAEPSLSQQGNPEEIDLGEDEGDEPDEVQLEQKQVPASVFGGLKD
D
NT seq
2706 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcgtgaggagccgccggcagcaggagcgggatcgagagcgggatccggcctg
gagcaggagccggcagcgatggcggagccggggccgtcagcgatggcggaagcacagccg
ggagcggggccggcagcggaagcggagccgggagcggtggcggatcccggaacggggccg
ggcccggggcggcccgagctgtgttttgaggatgaggaggtgcagcacgaggaagagctg
ctccgaaatcccttctcggtgcggggttggctccgctacgcccaggcccggcagcgcggg
ccccgcccccgcctcaaccagatctacgagagggccctgcgggaactgcctggcagttac
aagctgtggtaccagtacctgcggcagcgccgggctcaggtcaaaggtcgctgcccctcg
gaccccgccttcgaggaggccaacgctgtccacgagagagccctggtgttcatgcacaag
atgccgcggatctggctggattactgccagttcctggccgagcagggccgcatcacgcgc
acgcgccggacgtttgaccgggcgctgcgggcactgcccatcacccagcaccgccgcctc
tggccgccctacctgagcttcgtgcgccggcaccccctgcccgagaccgccgtgcgcgtc
ttccgccgcttcctcaagctgtgccctgaggaagcagagcagtacgtgtcctacctgcgc
tccgtgggccgtctggacgaggccgcgcaggttctggcccggctggtgaacgacgagcgc
ttcgtgtcccgccagggcaagtccaactaccagctgtggcaggagctgtgcgagctgctc
tcccagcaccccgaccgcgtgcgctctctggacgccggggggatcatccggggggggctc
acgcgcttcactgaccagcggggacggctctggggggccctggccgactgctacgtgcgc
tgcggccacctggaaaaggcccgggatgtgtacgaggaggccgttcagactgtgatgacc
gtgcgggatttcacgcaggtctttgacagctatgcccgtttcgaggaaagcgtcatcggg
gccctgctggacacgcaggcccagctgggccggggccaggacgaggaggtggagctggag
ctgcgcctggcgcgtttcgagcgcctcatggcgcggcggccgctgctgctcaacagcgtt
ctgctgagacagaacccccacaacgtgcacgagtggcacaagagggtggcactgcaccag
ggacagcccgacaagatcatccagacgttcaccgaggccgtccgcactgtggatccccag
cgcgccaccggccgtccccacgagctctgggtggccttcgctcgcttctacgaggacaat
gggcagctggatgatgccaggtccatcctgtcccgagccactcgggttcgtttccggcgc
gttgaggatttggccgcggtctggtgcgagtttggggagctggagctgcgccaccagcgc
caccaggaggcgctgagcgtgctgcggaaagccacagcgctcccagccaagcgcgccgag
tacttcgacagctcagagcccgtccagaaccggctctacaaatccctcaaggtgtggtcc
atgctggccgacctggaggagagcctgggcaccttccagtccacccgagcagtctacgag
cgcatcctggacctgcgcatcgccaccccccagatcgtcatcaactacgcactgctgctg
gaggagcacgggcgcttcgaggacagcttcaaggcctacgagcgtggcattgctctgttc
cggtggccacacgttggggacctgtggctcacgtacctgtccaagttcgtggcccggtac
ggtggccggaagctggagcgggcacgggacctcttcgagcaggcgctggacgggtgtccc
ccgcagcatgccaagaccatctacctgctctatgcccgtctggaggagcagtttgggctg
gcacgccgggccatggccgtgtacgagcgcggcacgcgggccgtgccccccgcccagcag
cgagacatgttccacatctacatccgccgtgccgccgagctcttcggggtcacccacaca
cggcccatctaccagagagccatcgaggtgctgggggatgacgcggcgcgggagctgtgc
ctgcgcttcgccgacatggagtgcaaactgggagaggtggatcgggcccgcgccatctac
acgtactgctcacagatctgtgacccacggatcacgggctcgttctggcagacgtggaag
gagtttgagatccggcacgggaacgaggacacgatccgggagatgctgcgcatcaagcgc
agcgtgcaggccacctacaacacccaggtgaacttcatggcctcgcagatgctcaaagtg
tccgggagtgccaccggcacagtgtcagacctggccccggggcagagcggcctggatgag
atgaagctgctggagcagcgggcggaggcgctggcggccgaggcccagcgggacacgccc
cgccccacccagcaggtgctgttcgtcagggccgaggcccccccaggggcagagccctcc
ctgtcccagcaggggaaccccgaggagatcgacctgggcgaggacgagggggacgagccc
gatgaggtgcagctggagcagaagcaggtcccggcctcggtgttcggggggctcaaggac
gactga
DBGET
integrated database retrieval system
