| Entry |
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| Symbol |
SMARCA4
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| Name |
(RefSeq) transcription activator BRG1 isoform X1
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| KO |
| K11647 | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-] |
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| Organism |
ccic Cinclus cinclus (white-throated dipper)
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:ccic00001]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
134055520 (SMARCA4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:ccic03021]
134055520 (SMARCA4)
03036 Chromosome and associated proteins [BR:ccic03036]
134055520 (SMARCA4)
Transcription machinery [BR:ccic03021]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
134055520 (SMARCA4)
Chromosome and associated proteins [BR:ccic03036]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
134055520 (SMARCA4)
Chromatin remodeling factors
BAF complex
134055520 (SMARCA4)
PBAF complex
134055520 (SMARCA4)
GBAF(ncBAF) complex
134055520 (SMARCA4)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
32:703372..726524
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| AA seq |
1620 aa
MATPEPPLGGTPRPGPSPGPGPSPGSMLGPSPGPSPGSGHSGHSGHALPAPGYAPDTIHP
LHKPLDPMHEKGMSEDPRYGQMKGMGMRPGGHAGMGPPPSPMDQHSQGYPSPLGGSEHAS
SPVPSNGPSSSSAGGSGTALDGSGSDSPALGRGPSPFNAAQLHQLRAQIMAYKLLARGQP
LPEHLQVAVQGKRPLPGMQPQIPALPPPAGATQGPGQAPGAGPAPPGYSRPHGIGGPNMP
PPGPSGVPPGMPGQPPGGPPKPWPEGPLSAAAPGGAPQKLLPPPPAGRPSPVPPAVPPAS
PGPPPPSPGQPAPPALPIHPKQNRITPIQKPRGLDPVEILQEREYRLQARIAHRIQELEN
LPGSLAGDLRTKATIELKALRLLNFQRQLRQEVVVCMRRDTALETALNAKAYKRSKRQSL
REARITEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVSGKIQKLTKAVATY
HANTEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTEL
VRQHKAAQVAKEKKKKKKKKKAENAEGQAPAIGPDGEPLDETSQMSDLPVKVIHVESGKI
LTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQPAQPALPVEEKK
KIPDPDSDDVSEVDARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVDKQSAL
MVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLI
IVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIKDKH
ILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFL
LPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQL
PEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNH
PYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSL
MTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSA
DTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKV
IQAGMFDQKSSSHERRAFLQAILEHEEQDESRQSAGSGSFPHAASSLCLGAESEEAPLKE
EDEVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWILKDDA
EVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQKKSSRK
RKREPEGPAGPPPSARSRDKDEESRKQKKRGRPPAEKLSPNPPPLTRKMRKIVDAVIKYK
DSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLC
QNAQTFNLEGSLIYEDSIVLQSVFTSVRQKVEKEEESDGEESEEEEEGEEEGSESEGSGF
PPARSVKVKIRLGRKEKVPERGKGRRRGGRGGRPKPLLSDDESEDEQEEVRESGNGTRSW |
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| NT seq |
4863 nt +upstreamnt +downstreamnt
atggcaactccggagcctccgctgggagggaccccccggcccggcccctctcccggtcct
ggcccttccccagggtccatgctgggcccctctcccggcccttcacccgggtctggacac
tcgggacactcgggccacgcactcccggcaccgggatatgccccggacaccatccacccg
ctgcacaagccccttgatccaatgcacgagaagggaatgtcagaggatccgcgctacggg
cagatgaagggaatgggaatgcggccaggggggcatgcgggaatgggccccccccccagc
cccatggatcagcattcccaaggttatccatcccctctgggcggctcagagcatgcctcc
agcccagtgccatccaacggcccctccagcagctccgcaggtggctctggcacggcgctg
gacggctccggctcagactcgccagcactgggccggggtccatccccgttcaacgcggca
cagctgcaccagctccgtgcccagatcatggcctacaagctgctggcacggggacagccg
ctcccagagcacctccaggtcgccgtccagggaaagcggcccctgcctgggatgcagccg
cagattcctgctctacctccgcccgccggcgccacgcagggcccgggacaagcgcccgga
gcagggccggcaccacccgggtactccagacctcatggaataggagggcccaacatgccc
cctcctggaccctcaggagttccccctggcatgccaggacagccccctgggggccccccc
aagccctggccagaagggccgctctcggcagcagcaccaggtggggcccctcagaagctg
ctgccacctccccctgcgggccgcccctctcctgtgcccccggctgtgcctccggcatcc
cctggaccccccccaccctcgccggggcagccggcgccacccgcactcccgatccatccc
aagcagaaccggatcacccccatccagaagccccgtggcctcgaccctgtggagatcctg
caggaacgcgagtacagactccaagcccgcatcgcccaccgcatccaagagctggaaaac
cttcctggttccttggctggagacctgcggaccaaagcaaccatcgagctcaaggctctg
cggctgctcaacttccagcgccagctgcggcaggaggtggtggtgtgcatgaggcgggac
acggcgctggagacggcgctcaatgccaaggcctacaagcgcagcaagcgtcagtcatta
cgtgaggcccggatcacggagaagctggagaagcagcagaagatcgagcaggagcggaag
cgccggcagaagcatcaggaatacctcaacagcatcctgcagcatgccaaggacttcaag
gaataccaccgtagcgtgagtgggaagatccagaagctgaccaaggcagtggccacgtac
cacgccaacactgagcgtgaacagaagaaggagaacgagcgcatcgagaaggagcggatg
cgccggctcatggcagaggatgaggaaggctaccggaagctcattgaccagaagaaggac
aagcgcctggcctacctgctgcagcagacagatgagtacgtggcaaatctcacagagctc
gtgcggcagcacaaggcagcccaggtggccaaggagaagaagaagaagaagaagaagaag
aaggcagagaatgctgaaggacaggctccagccatcggccccgatggggagccactggac
gagacgagccagatgagcgacctcccggtgaaggtgatccatgtggagagtgggaagatc
ctcactggcactgatgcgcccaaggctgggcagctcgaggcctggctggaaatgaaccct
gggtacgaggttgctccacgctctgacagcgaggagagcggctccgaggaggaggaggag
gaggaggaagaggagcagccacagccagcacagccagcgctgcctgtggaggagaagaag
aagattccagatccggacagtgacgatgtctcggaggtggatgcccgacacatcatcgag
aacgcgaagcaggatgtggatgacgagtatggggtgtcgcaggcactggcacgagggctc
cagtcctactacgccgtggctcacgccgtgactgagcgcgtggacaagcagtcagccctg
atggtcaatggtgtcctcaagcagtaccagatcaaaggcctggaatggcttgtgtccctg
tacaacaacaacctcaatggaattctggcagatgagatgggactggggaaaaccatccag
accatcgccctcatcacgtacctcatggagcataagcggatcaatggccccttcctcatt
atcgtcccactctcgactttgtccaactgggcctatgagtttgacaaatgggctccttcc
gtggtgaaggtctcctacaagggctctccggcagcacgacgcgccttcgtccctcagctc
cggagtggaaaattcaacgtcctgctgacaacgtacgagtacatcatcaaggacaaacac
atactggccaagatccgctggaagtacatgattgtggatgaggggcaccggatgaagaac
caccactgcaaactgacacaggtgctcaatacccactacgtggccccgcggcggctgctc
ctcactggtaccccactccagaacaagctcccagagctctgggctctcctcaacttcctg
ctcccaaccatcttcaagagctgcagcacctttgagcagtggttcaacgcgccatttgcc
atgaccggggagaaggtggacctgaacgaggaggagacgatcctcattatccgccgcctg
cacaaggtgctccggcccttcctgctccggcgcctcaagaaggaggtggaagctcagctc
ccagaaaaggttgagtatgtgatcaagtgcgacatgtcagcgctgcagcgggtcctgtac
cggcacatgcaggccaagggtgtcctcctcacagatggctccgagaaggacaagaagggc
aaaggtggcacgaagacgctgatgaacacaatcatgcagctgcgcaagatctgcaaccac
ccctacatgttccagcacatcgaggaatccttctcagagcacttggggttcaccggtggg
atcgtgcaggggctggatttataccgtgcctccggaaagtttgagctcctggaccggatc
ctgcccaagctccgggccaccaaccacaaggtgctgctgttctgccagatgacctccctg
atgaccatcatggaggactattttgcttaccgtggcttcaaatacctcaggctggatggg
accacgaaggcggaggaccgcggaatgttgctgaagacgttcaatgagccaggctctgag
tatttcatcttcctgctgagcacacgggctggggggctgggcctcaacctccagtcagct
gacacagtcatcatctttgacagcgactggaacccacaccaggacctgcaggcccaggac
cgggcccaccgcatcgggcagcagaacgaggtccgcgtgctccggctttgcaccgtcaac
agcgtggaggagaagatcctggcagctgccaagtacaagctcaacgtggaccagaaggtg
atccaggccggaatgtttgaccagaaatcctccagccacgagcgccgggcattccttcag
gccatcctggagcacgaggagcaggatgagagcagacagagcgcgggcagtggcagcttc
ccccacgctgcctcctccctgtgcctgggcgctgagtcggaggaagcacctctaaaggaa
gaagacgaggtgcccgatgatgagaccgtgaatcagatgatcgcccggcacgaggaggag
ttcgatctgttcatgcgcatggacctggaccggcggcgggaggaagcgcggaatcccaag
cggaagccgcggctgatggaggaggacgagctcccatcctggatcctgaaggatgatgct
gaggtggagcggctcacctgtgaggaagaggaggagaagatgtttggccgcggctcccgg
caccgcaaggaagtggattacagtgattctctcacagaaaaacaatggcttaaggccatc
gaggaggggacgctggaggagatcgaggaggaagtccggcagaagaaatcctcgcggaag
cggaagcgggagcccgagggtcccgcagggccccccccaagtgcccggagccgggacaag
gatgaggagagcaggaagcagaagaagcgaggacggcccccagctgaaaaactgtctcca
aatcctccccccctcacccggaaaatgcgtaaaattgtggatgccgtcatcaagtacaag
gacagcagcagcgggcgacagctgagcgaggttttcatccagctcccgtcccgcaaggag
ctgccggaatactacgagctcatccggaaacctgtggacttcaagaagatcaaggagcgg
atccgaaaccacaagtaccggagtctcaacgacctggagaaggatgtgatgctgctgtgc
cagaatgcccagaccttcaacctggaagggtccctgatctatgaggattccatcgtgctc
cagtctgtgttcaccagtgtccggcagaaggtggaaaaggaggaggaaagcgatggagag
gagagcgaggaggaagaagagggagaggaggaaggatctgagtctgaggggtctggattc
cccccagctcgctcagtgaaggtgaagatccgtctgggccgaaaggagaaggttccggag
cgtgggaagggccggcgccggggggggcgggggggacgccccaaacccctcctgagcgac
gatgagagcgaggatgagcaggaggaggtgagagaatctgggaatggcaccagatcctgg
taa |
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