Cinclus cinclus (white-throated dipper): 134055686
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Entry
134055686 CDS
T10813
Symbol
HDAC6
Name
(RefSeq) histone deacetylase 6 isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
ccic Cinclus cinclus (white-throated dipper)
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ccic01009
]
134055686 (HDAC6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccic03019
]
134055686 (HDAC6)
04131 Membrane trafficking [BR:
ccic04131
]
134055686 (HDAC6)
03036 Chromosome and associated proteins [BR:
ccic03036
]
134055686 (HDAC6)
Enzymes [BR:
ccic01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
134055686 (HDAC6)
Protein phosphatases and associated proteins [BR:
ccic01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
134055686 (HDAC6)
Messenger RNA biogenesis [BR:
ccic03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
134055686 (HDAC6)
Membrane trafficking [BR:
ccic04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
134055686 (HDAC6)
Chromosome and associated proteins [BR:
ccic03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
134055686 (HDAC6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
PTPRCAP
DNA_pol_A_exoN
Nop14
Motif
Other DBs
NCBI-GeneID:
134055686
NCBI-ProteinID:
XP_062368107
LinkDB
All DBs
Position
33:2179182..2193109
Genome browser
AA seq
1063 aa
AA seq
DB search
MGVVGGRGSRQRAWVGWAWLKGLLWDGRVLRARRGLKFFPEMGVDERGLRAGRGLRVSPG
GRGPVGVSDAGPAQGRAGRRLPQQGALFQARRRGRARGRRAGLEAELQQLDLGAEAAAPT
GTGLVSDGGNRAERGDSRPPWDLVLEGLVQRCVPVQCRPATDEELLLVHSPSFVAQLESP
DSPPQGGSGPRWAVGAALALLEQVLGGTLRNGVALMSPQDPQDPPEPTAVAARVAQKHLG
VQRVLIVDWSPQPGRSLPRLFQEDPSVLYFGAQRGREPPPSTGHGPGEGFSVELRWEQPG
VTDGDYAAAAFHVLLPIAFQFQPELVLVEASLEDLGGSLGVSPSGFSLLTHLLSALGRGR
LLLLLQRPGQHCPHPERPPAVLGLPAEHRPPYWITAILIPLRDTPLDTPKLLPDIPKTPH
GSSNPLGDPSDPQEPPPRTPKIFWGNPKIGWESTLRCPSCTEVEEEEEEEEEEKEEEEGE
AEAGEEEEEDEEEKEELEGDGPPPETPPEPPPRARVGLVYDPRMEEHRNTWDSHHPECPQ
RLARVLQRLQELGLAQRCLRVPARLASPQQLRACHTRAHVRALSRTPVLSPRELRALSQR
YNSVYLCPKSYTCARLAAGGACSAVGAVLGGQVRSALAVLRPPGHHARPSSAGGFCLFNN
VGVAARHAQSLAGSPLRVLILDWDVHHGNGTQEIFEEDPSVLYMSLHRHDGSFFPGGAGG
SPRRRGRGPGTGFTLNVGWGGPRVGDPEYLAALTRLLLPVACQFGPELVLVSAGFDAGRG
DPLGGCLVSPQTFGLMTHLLGGLAGGRLVLVLEGGYNLAVTAEGVGQCLGVLLGDPPTLP
PPGTPQPAALRALSRTLRAQRGSWSCLQLPHAEPPQESPKEGAGSDDVTSTTGDVTGSAD
LDSAIHRLGALQLGDAPGAEPPPGPAPTAAAAAAPCWEEEEELEEGALYAVTPLLECPHL
GAVAPPPPGGALGTVLPPPCGTCGSRRENWLCLSCHQVQCGRYVGGHMVEHGDASGHPLV
LSLRDLAAWCYPCGGYVTHPVLLPTKTFIYRLKFGSDPPTSSF
NT seq
3192 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtggtcggtgggcgaggctcacgccagagggcttgggttgggtgggcgtggctt
aaagggttattgtgggatgggcgtgttttgcgggctaggcgtggcctaaagttttttccc
gaaatgggcgtggacgaaaggggtttgcgtgctgggcgtggcctaagggtttcaccgggt
gggcgtggccctgtgggcgtgtctgacgcaggccccgcccagggccgcgctgggcggcgg
ctcccccagcagggggcgctgttccaggcgcggaggcgcgggcgcgcacggggccggagg
gcggggctggaggcggagcttcagcagctggatttgggggcagaggccgcagctcccact
gggacaggactggtcagtgatggagggaacagagccgagcgtggggacagccgcccccca
tgggatctggtgctggaggggctggtccagcgctgcgtccctgtgcagtgccgcccagcc
actgacgaggagctgctgctggtgcacagcccctcatttgtggcacagctggagtcccct
gacagccccccacagggggggtcgggaccccgctgggccgtgggggcagcgctggcactg
ctggagcaggtgctaggggggaccctgcgcaatggggtggccctgatgagcccccaggac
ccccaggacccccctgagcccacggccgtggctgcccgggtggcccagaaacatctgggg
gtgcagcgtgtcctgattgtggattggagcccccagcctggccggagcctcccccggctg
ttccaggaagatcccagcgttctgtactttggggcgcagcggggccgggagccccccccg
agcaccgggcacggccctggagaggggttcagcgtggagctgcgctgggagcagcctggt
gtcactgatggtgattacgccgccgccgccttccacgtccttctgcccatcgccttccag
ttccagcccgagctcgtcctggtcgaggcttcgctggaggatttgggggggtccctgggg
gtctccccttccgggttctctctcctgacccacctgctctcggccctggggaggggacgg
ctgctgctgctgctgcagcggcctggccagcattgcccgcaccctgagcgtccaccagca
gtactggggctgcctgcagagcatcggccgccatattggattaccgccatcttgattcct
ctcagggacacccccctggacaccccaaaactcctcccagacatcccaaaaacccctcat
ggatcctcaaacccccttggcgacccctcagaccctcaggaaccccccccaaggacccca
aaaatcttctgggggaaccccaaaattgggtgggagtcaaccctgaggtgcccctcctgc
acagaggtcgaggaggaggaggaagaggaggaggaagagaaggaggaggaggaaggagag
gcagaagcaggggaggaagaagaagaggatgaggaggaaaaggaggagctggagggggat
gggccccccccagagacccccccggagccaccacctagagcccgagtggggctggtctat
gacccacggatggaggagcacaggaacacctgggacagccaccaccccgagtgcccgcag
cgcctggcgcgggtgctgcagcgcctgcaggagctggggctcgcccagcgctgcctccgg
gtgcccgcccggctcgccagcccccagcagctccgagcctgccacacccgtgcccacgtg
cgggctctgtcccggaccccggtgctgtccccacgggagctgcgggcgctgtcccagcgc
tacaacagcgtttacctgtgcccgaaatcctacacctgtgcccgcctggccgcgggcggg
gcctgctctgctgtgggggccgtgctggggggccaggtgcgctcggctctggccgttctg
cgcccccccggccaccacgcccgcccgagctctgccgggggcttctgcctcttcaacaac
gtgggggtggctgcacgccatgcccagagcctggcggggtcccccctcagggtgctgatc
ctggactgggacgttcaccacggcaatggtacccaggagatcttcgaggaggaccccagt
gtcctgtacatgtccctgcaccgccatgatggctccttcttcccggggggggccgggggg
tccccgcggcgccgggggaggggtcccggcaccggcttcaccctgaacgtgggctggggg
gggccccgcgtgggggaccccgagtacctggcagccctgacccgactgctgctgcccgtg
gcctgccagtttgggccggagctggtgctggtgtcggccgggttcgacgcgggtcggggg
gaccccctgggggggtgcctggtctccccccagaccttcggcctcatgacccatctgctg
ggggggctggcgggggggcggctcgtgctcgtgctcgagggcgggtacaacctggcggtg
acggccgagggggtggggcagtgcctgggggtcctgctcggggacccccccacgctgccc
ccccccgggaccccccagcccgcggcactccgggccctgagccgcaccctgcgagcccag
cggggctcctggagctgcctgcagctgcctcacgctgagcccccacaggagtctcccaaa
gagggggcgggcagcgatgacgtcacatccaccaccggtgacgtcacagggtcagccgac
ttggactccgccattcaccgcttgggggcgctgcagctcggggacgccccgggggcggag
cctccaccaggccccgcccccacagcagcggccgcggccgccccctgctgggaggaggag
gaggagctggaggagggggcgctgtacgccgtgacacctctcctggagtgtccccacctg
ggggctgtggccccgcccccccccgggggggccctcgggaccgtcctgccccccccctgc
gggacctgcgggagccgccgtgagaactggctgtgcctgagctgccaccaggtgcagtgt
gggcgctatgttggggggcacatggtggaacacggcgacgcctcggggcaccccctggtg
ctgagcctgcgggacctggcggcctggtgctacccctgcgggggctacgtcacacacccc
gtgctgctccccaccaagaccttcatctaccgcctcaaattcggctctgacccccccacc
tcgtccttctga
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