Cinclus cinclus (white-throated dipper): 134055742
Help
Entry
134055742 CDS
T10813
Symbol
POLR2A
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1 isoform X1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic03020
RNA polymerase
ccic03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
134055742 (POLR2A)
09124 Replication and repair
03420 Nucleotide excision repair
134055742 (POLR2A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccic03021
]
134055742 (POLR2A)
03400 DNA repair and recombination proteins [BR:
ccic03400
]
134055742 (POLR2A)
Enzymes [BR:
ccic01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
134055742 (POLR2A)
Transcription machinery [BR:
ccic03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
134055742 (POLR2A)
DNA repair and recombination proteins [BR:
ccic03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
134055742 (POLR2A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
134055742
NCBI-ProteinID:
XP_062368168
LinkDB
All DBs
Position
34:complement(618301..672423)
Genome browser
AA seq
1969 aa
AA seq
DB search
MHGGPPSGDSACPLRTIKRVQFGILSPDEMKRMSVTEGGIKYPETTEGGRPKLGGLMDPR
QGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLGKTMKILRCVCFFCSKLLVDS
NNPKIKDILGKSKGQPKKRLTHVYDLCKGKNICEGGEEMDHKFGVEQPEGDEDLTKEKGH
GGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMDPK
FARPEWMVCTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAH
VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF
SARTVITPDPNLAIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIR
DNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWST
FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT
LTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHIN
CIRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMG
HDTTRLFYSNIQTVINNWLLIEGHTIGIGDSIADAKTYQDIQNTIKKAKQDVIEVIEKAH
NNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINI
SQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAM
GGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESV
EFQNLATLKPSNKAFEKKFKFDYTNERALRRTLQEELVKDILSNAHIQNELEREFDRMRE
DREVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINSRLPSDLHPVKVVEGVKELSRKLV
IVNGEDPLSRQAQENATLLFNIHLRSTLCSRRMVEEFRLSGEAFDWLLGEIESKFNQAIA
HPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTV
FLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPD
FDVSRISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRI
MNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKII
ITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERE
LYHVISFDGSYVNYRHLALLCDTMTSRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLME
AAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKHGMEIPSALPGLGVGGPTGM
FFGSAPSPMGGMSPAMTPWNQGATPAYGAWSPSVGSGMTPGGAGFSPSAASDASGFSPGY
SPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPS
YSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY
SPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTS
PSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYS
PTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSP
KYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDDDN
NT seq
5910 nt
NT seq
+upstream
nt +downstream
nt
atgcacggcgggccaccctcaggcgacagcgcctgcccgcttcggaccatcaaacgagtc
cagttcggaatcctcagccccgatgagatgaaacggatgtcagtgaccgaggggggcatc
aagtaccccgaaaccaccgaggggggacgtcccaaacttggggggctcatggaccccagg
cagggcgtcatcgagaggacagggcgctgccagacctgtgctgggaacatgacagagtgc
ccgggtcacttcggtcacatcgagctggccaagcccgtgttccacgtgggatttttgggg
aaaaccatgaaaatcctgcgctgcgtctgcttcttctgctccaaacttctcgtggactcg
aacaaccccaaaatcaaggacatcctgggcaaatccaaggggcagcccaagaagaggctg
acccacgtgtacgacctgtgcaagggcaagaacatctgcgaggggggcgaggagatggat
cacaaatttggggtggagcagcccgagggagacgaggacctcaccaaggagaagggccac
ggtggctgtggccgttaccagccccgcatccgccgctcgggcctggagctttacgccgag
tggaagcacgtgaacgaggattctcaggagaagaaaatcctgctgagcccggagcgggtg
cacgagatcttcaaacgcatctcggacgaggagtgcttcgtgctgggcatggatcccaaa
ttcgcccggcccgagtggatggtgtgcacggtgctgcccgtgccacccctgtccgtgcgg
cccgccgtggtcatgcaggggtcagcacggaaccaggatgacctgacccacaaattggcc
gacatcgttaagatcaacaatcagctgagacgtaacgagcagaacggggcggccgctcac
gtcatcgccgaggacgtcaagctcctgcagttccacgtggccaccatggtggacaacgag
ttgcccggcttgcccagggccatgcagaaatcggggcgtcccctaaaatccctgaagcag
cggctgaaggggaaggagggcagagttcgggggaacctcatggggaagcgcgtggacttc
agcgcgcgcacggtcatcacccccgaccccaacctggccatcgaccaggtgggggttcct
cgatccatcgccgccaacatgaccttcgctgagattgtcacccccttcaacatcgacagg
ttgcaggaattggttcgtcgagggaacagccaatacccaggagccaaatacatcatcagg
gacaacggggacaggatcgacctccgcttccaccccaaacccagcgacctccacctgcag
attggctacaaggtggaacgtcacatgtgcgacggggacatcgtgatcttcaaccggcag
ccgacgttgcacaagatgtccatgatgggccacagggtcaggatcctgccctggtccacg
ttcaggctcaatttgagtgtcaccacgccctacaacgccgatttcgacggcgacgagatg
aatcttcaccttcctcagtcgctggagacgcgtgcggagatccaggagttggccatggtg
ccccggatgatcgtcaccccccagagcaaccggcccgtcatgggcatcgtgcaggacacg
ctgacggccgtgcgcaagttcaccaagagggacgtcttcctcgagaggggcgaggtgatg
aacctgctgatgttcctgtccacgtgggacggcaaagttccccagccagccatcctaaaa
ccacgacccctgtggacagggaaacaaatcttctccctcatcatccccgggcacatcaac
tgcatccgcacgcacagcacgcaccccgacgacgaggacagcgggccctacaaacacatc
tcgcccggggacaccaaggtcatcgtggagaacggggagctcatcatgggcatcctctgc
aagaaatccttggggacgtcggcggggtccttggtgcacatctcctacctggagatggga
cacgacaccaccagacttttctacagcaacatccaaaccgtcatcaacaactggctgctc
atcgagggtcacaccatcggcatcggggactccatcgccgacgccaaaacctaccaggac
atccaaaacaccatcaagaaagccaagcaggacgtcatcgaggtgatcgagaaggctcac
aacaacgagctggagcccaccccgggcaacaccttgagacaaaccttcgagaaccaggtg
aaccggatcctcaacgacgcccgcgacaaaaccggttcttctgcccagaaatccctgtcc
gagtacaacaacttcaaatccatggtggtctcgggggccaagggctccaaaatcaacatc
tcccaggtcatcgccgtggtgggacagcagaacgtcgagggcaagcggatcccgtttggc
ttcaagcaccggacgttgccgcatttcatcaaggacgattacggcccagagagccgcggc
ttcgtggagaactcgtacctggccggcctcacccccaccgagttcttcttccacgccatg
ggtgggcgcgagggtctcatcgacaccgccgtgaaaacggccgagaccgggtacatccaa
cggcgtctgatcaagtccatggaatcggtgatggtcaagtacgacgccacggtcaggaac
tccatcaaccaggtggtgcagctgcgttacggcgaggacgggctggccggggagagcgtg
gagttccagaacctggccaccctcaaaccatccaacaaagccttcgagaagaagttcaag
tttgattacaccaacgagcgggcgctgcgccggacgctgcaggaggagctggtcaaggac
atcctgtccaacgcccacatccagaacgagctggagcgcgagttcgaccgaatgcgggag
gacagggaggtgctgcgggtcatcttccccactggagatagcaaggtggtgctcccctgt
aacctgctccgcatgatctggaacgctcagaagattttccacatcaactcccggctgccc
tcggacctgcaccccgtcaaggtggtggagggggtgaaggagctgagccgaaagctggtg
atcgtgaacggggaggatcccctgagccgacaggcgcaggagaacgccacgctgctcttc
aacatccacctgcgctccacgctctgcagccgccgcatggtggaggagttccggctcagc
ggggaggccttcgactggctgctgggggagatcgagtccaagttcaaccaggccatcgct
caccccggtgagatggtcggcgcgctggccgcgcagtccctgggcgaaccggccactcag
atgaccctcaacaccttccactacgccggggtttcggccaaaaacgtcaccttgggtgtc
ccccgcctcaaggaactcatcaacatctccaaaaaacccaaaactccgtccctcaccgtg
ttcctgctgggacagagcgcccgcgacgccgagcgcgccaaggacatcctgtgccgcctg
gagcacaccacgctgcgcaaggtgacggccaacaccgccatctactacgaccccaaccct
cagagcacggtggtggccgaggaccaggagtgggtcaacgtttactacgagatgcccgac
ttcgacgtgagccgcatctcgccctggctgctgcgcgtggagctcgaccgcaagcacatg
accgaccgcaagctgaccatggagcagatcgccgagaagatcaacgccggtttcggtgac
gacctcaactgcatcttcaacgacgacaacgccgagaaattggtgctgcgcatccgcatc
atgaacagcgacgagaacaagatgcaggaggaggaggaagtggtggacaagatggacgac
gacgttttcctgcgctgcatcgagtccaacatgctgacggacatgaccctgcagggcatc
gagcagatcagcaaggtgtacatgcacctgccccagacggacaacaagaagaagatcatc
atcaccgaggacggggagttcaaggcgctgcaggagtggatcctggagacggacggcgtc
agcctgatgcgcgtgctgagcgagaaggacgtggaccccgtacggaccacgtccaacgac
atcgtggagatcttcaccgttttggggatcgaggcggtgcggaaggctctggaacgggag
ctgtaccacgtcatctccttcgacggctcctacgtgaactatcgtcacctggcgctgctg
tgcgacaccatgacgtcccggggacacctgatggccatcacccggcacggcgtcaaccgc
caggacaccgggcccctgatgaagtgttccttcgaggagacggttgatgtcctgatggag
gcagctgcccacggggagagtgaccccatgaaaggagtttctgagaacatcatgctgggt
cagttggccccggctggcaccgggtgcttcgatctcctgctggatgctgagaaatgcaaa
catggaatggaaattcccagcgctctgcccggcctcggggtcggaggacccaccgggatg
ttcttcggatcagcccccagccccatgggggggatgtccccagccatgaccccctggaac
caaggggccaccccggcctacggcgcctggtcccccagtgtgggcagcgggatgaccccg
ggcggggccgggttctcccccagcgccgcctccgacgcctccggcttcagccccggttat
tccccggcctggtcccccacccccggctccccggggtcacccggcccctccagcccctac
atcccctccccaggtggggccatgtcccccagctacagcccgacgtcccccgcctacgag
ccgcggtcaccggggggctacacgccgcagagccccagttacagccccacctctcccagt
tacagccccacttctcccagttacagccccacctcgcccaactacagccccacctctccc
agttacagcccaacctctcccagttacagcccgacctctcccagttacagcccgacctcg
cccagttacagccctacgtcaccgagctacagccccacgtctcccagttacagcccgacc
tctcccagttacagcccgacctctcccagttacagccccacgtctcccagttacagcccg
acctctcccagttacagcccgacctcgccaagctacagcccgacttctcccagttacagc
cccacctctcccagttacagcccgacttctcccagttacagccccacctctcccagttac
agcccgacctctcccaactacagccccaccagccccaactacaccccgacctctcccagt
tacagccccacctctcccagttacagccccaccagccccaactacaccccgacctcaccc
aactacagccccacctctcccagttacagccccacctctcccagttacagccccacctct
cccagttactccccatccagcccccgctacaccccgcagtcacccacctacacccccagc
agccccagttacagccccagcagccccagttacagccccacatcccccaagtacacccca
accagtcccagctacagccccagctcccccgagtacaccccgacctctcccaagtacagc
cccacatctcccaagtacagccccacgtcgcccaagtacagtcccacctctcccacctac
agccccaccacccccaagtacagccccacgtcgcccacctacagccccacctcgcccgtc
tacaccccgacgtctcccaagtacagccccacctcgcccacctacagccccacctcgccc
aagtacagccccacctcgcccacctacagccccacctcgcccaagggttccacgtacagc
cccacgtcccccggttacagccccacgtcaccgacctacagcctcaccagcccggccatc
agccccgacgacagcgacgacgacaactga
DBGET
integrated database retrieval system
