Cinclus cinclus (white-throated dipper): 134055998
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Entry
134055998 CDS
T10813
Symbol
ERCC2
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic03022
Basal transcription factors
ccic03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
134055998 (ERCC2)
09124 Replication and repair
03420 Nucleotide excision repair
134055998 (ERCC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccic03021
]
134055998 (ERCC2)
03036 Chromosome and associated proteins [BR:
ccic03036
]
134055998 (ERCC2)
03400 DNA repair and recombination proteins [BR:
ccic03400
]
134055998 (ERCC2)
Enzymes [BR:
ccic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
134055998 (ERCC2)
Transcription machinery [BR:
ccic03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
134055998 (ERCC2)
Chromosome and associated proteins [BR:
ccic03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
134055998 (ERCC2)
DNA repair and recombination proteins [BR:
ccic03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
134055998 (ERCC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HBB
DEAD_2
DEAD
ResIII
SesA
Motif
Other DBs
NCBI-GeneID:
134055998
NCBI-ProteinID:
XP_062368458
LinkDB
All DBs
Position
37:complement(838374..858174)
Genome browser
AA seq
546 aa
AA seq
DB search
MKLNVDGLLVLFPYEFIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLSLIVAYQ
RAHPLDVSKLIYCSRTVPEIEKVVEELRKLLECYERDLGEPLPFLALALSSRKNLCVHPQ
VSALRFGKEVDSRCLALTASYLRDPPEGPRDTCTFFQEFEARGRQSPLPFGVHNLDDLRT
LGRQRGCCPYYLARASLPHANVVVYSYHYLLDPKIAGLVSGELARSSVVVFDEAHNIDNV
CIEAMGVTITRRTLDRCQANVGTLQSTVQRIKDSDSRRLADEYRRLLQGLREAGAARDSD
LILGNPVLPDEILQEAVPGSIRTAEHFVGFLRRLVEHLRAQLRGPRVQQLSPPAFLRELR
ERVCIDRKPLRFCAERLHSLLRTLALPDVADFSPITLVANFATLVSTYSKGFTIIIEPFD
ERTPSVSNPVLHFSCLDASIAIRPVFERFQSVIVTSGPRYHGNLQHDPGPDLPVPHDRGK
GQRPSGHELQIREPRGHRWVWGLRGHFGGFWGFFGIFLGFFGDFLGIFWGFFRIFWGFFG
GVLGWP
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgaacgtggacgggctcctggtgctgttcccctatgagttcatctaccccgag
cagttctcctacatgctggagctcaagcgcacgctggacgccaagggtcacggggtgctg
gagatgccgtcggggacgggcaagacggtgtcactgctgtccctgatcgtggcctaccag
agggctcaccccctggacgtctccaagctcatctactgctcccgcaccgtgcccgagatc
gagaaggtggtggaggagctgaggaaacttctggaatgttacgagagggacctgggggag
cctctgcccttcctggcgctggcgctgagctcccgcaagaatctctgcgtgcacccccag
gtgtcagctctccgtttcgggaaggaggtcgacagtcgctgcctggccctgacggcctcg
tacctgagggacccccccgagggcccccgggacacctgcaccttcttccaggagttcgag
gctcggggtcggcagagccccctcccctttggggttcacaacctggacgatctccggacc
ctcggccgccagcgcggctgctgcccctattacctggcaagagcctcgctgccccacgcc
aacgtggtggtgtacagctaccattacctgctggaccccaaaatcgccgggctggtttcg
ggggagctcgcccgctcctcggtcgtggtgttcgacgaagctcacaacatcgataacgtt
tgcatcgaggccatgggagtgaccatcacccgccggacgctcgaccgctgccaggccaac
gtgggaaccctgcagagcacggtccagcggatcaaggactcggattcccggcgcctggcg
gacgaatatcgccgcttgctgcaggggctgcgcgaggccggcgccgcccgcgactccgac
ctgatcctggggaatcccgtcctgcccgacgagatcctgcaggaggccgttcctggcagc
atccgcacggccgagcactttgtggggttcctgcgtcgtttggtcgagcacctgcgggcc
cagctcaggggaccccgagttcagcagctgagccccccagcgttcctgagggagctcagg
gagagggtctgcatcgacaggaaacccctcaggttctgtgctgaacgcctgcactccctg
ctccgaactctcgccctccccgacgtcgctgatttttcccccatcaccctcgtggcaaat
ttcgccaccttggtcagcacctacagcaaaggtttcaccatcatcatcgaacccttcgac
gagcgcaccccgagcgtctccaaccccgtgctgcacttcagctgcctggacgcgtccatc
gccatcaggccggtgttcgagcgcttccagtcggtcattgtcacctcggggccccgttac
catggcaaccttcagcatgaccctggcccggacctgcctgtgccccatgatcgtgggaag
gggcaacgaccaagtggccatgagctccaaattcgagagccgagaggacatcggtgggtc
tgggggcttcgggggcattttgggggattttggggattttttgggatttttttgggattt
tttggggattttttggggattttttggggattttttcggattttttggggattttttgga
ggggttttggggtggccatga
DBGET
integrated database retrieval system
