Cinclus cinclus (white-throated dipper): 134056020
Help
Entry
134056020 CDS
T10813
Symbol
SUPT5H
Name
(RefSeq) transcription elongation factor SPT5 isoform X1
KO
K15172
transcription elongation factor SPT5
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic03250
Viral life cycle - HIV-1
Brite
Transcription machinery [BR:
ccic03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
134056020 (SUPT5H)
RNA polymerase I system
134056020 (SUPT5H)
Messenger RNA biogenesis [BR:
ccic03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
134056020 (SUPT5H)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
134056020
NCBI-ProteinID:
XP_062368484
LinkDB
All DBs
Position
37:complement(1098364..1107068)
Genome browser
AA seq
1083 aa
AA seq
DB search
MSDSEDSNFSEDESERSSEEGDDNEAEEQRGAGSGKEEAEEEEEEEEEEEEEEYDEEEEE
EEDDDRPAKKPRHGGFILDEADVDDEYEDEDQWEDGAEDILEKEEIEASNIDNVVLDEDR
SGARRLQNLWRDQREEELGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLLPGVKDPNL
WTVKCKIGEERATAIALMRKFIAYQYTDTPLQIKSVVAPEHVRGYLYVEAYKQTHVKQAI
EGVGNLRLGYWNQQMVPIKEMTDVLKVVKEVTNLKPKAWVRLKRGIYKDDIAQVDYVEPS
QNQISLKMIPRIDFDRIKARMSLKDWFAKRKKFKRPPQRLFDAEKIRSLGGDVASDGDFL
IFEGNRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLEVVTESTGKEREHN
FQPGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLEFPAQELRKYFRMGDHVK
VIAGRFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGEL
VQLDPQTVGVIVRLERETFQVLNMYGKVVTVRHQAVTRKKDNRFAVALDSEQNNIHVKDI
VKVIDGPHSGREGEIRHLFRGFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNFAM
CSFAPMSPRISSPMHPSGAGQRGGFGAGGLSRGRGRRDNDLIGQTVRISQGPYKGYIGVV
KDATESTARVELHSTCQTISVDRQRLTTVGSRRPGGLTSAYGRTPMYGSQTPMYGSGSRT
PMYGSQTPLHDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRADEDFEYGFEDEP
TPSPQGYGGTPNPQTPGYPDPASPQVSQPYNPQTPGTPAMYNTEQFSPYAVPSPQGSYQP
SPSPQSYHQVAPSPVGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSPGGYN
PHTPGSGIEPSAGDWVTTDIQVKVRDSYLDSAAVGQTGVIRSVTGGMCSVYLKDSEKVVS
VSSEHLEPVTPTKSNKVKVILGEDREATGILLSIDGEDGIVRMDLEEQLKILNLRFLGKL
LEA
NT seq
3252 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacagcgaggacagcaacttctcggaggacgagagcgagcgcagcagcgaggag
ggcgacgacaacgaggccgaggagcagcgcggagcgggcagcgggaaggaggaggcggag
gaggaggaggaggaggaggaagaggaggaggaagaggagtacgatgaggaggaggaagag
gaggaggacgatgaccgcccggccaagaaaccgcggcatgggggtttcatcctggatgag
gccgatgtggacgacgagtacgaagatgaagatcagtgggaggatggggccgaggacatc
ctggagaaagaggagattgaagcctctaacattgacaacgtggtgctggatgaggatcgc
tcgggggcacggcggctccagaacctctggagggaccagcgggaggaggagctgggcgag
tattacatgaagaaatatgccaagtcctcagtgggggagacagtttatggcggctctgac
gagctctcagatgacatcacccagcagcagctgctgcccggtgtcaaggaccccaatctc
tggacggtcaagtgtaagatcggggaggagcgcgccacggccatcgctctcatgcgcaag
ttcatcgcctaccagtacacagacacccccctgcagattaagtcggtggtggcccccgag
cacgtgcgggggtacctgtacgtcgaggcctacaagcagacccacgtcaagcaggccatc
gagggtgtgggaaacctgcgtctggggtactggaaccagcagatggtgcccatcaaggag
atgactgacgtgctcaaggtggtcaaggaggtgaccaacctcaaacccaaggcctgggtg
cgcctcaagaggggcatctacaaggatgacatcgcccaggtagattacgtggagcccagc
cagaaccagatctccctgaagatgatccccaggatcgactttgaccggatcaaagcccgg
atgagcctgaaggactggttcgccaaacgcaagaagttcaagcggccgccccagcgtctc
ttcgatgctgagaagatccggtccctgggtggggacgtggcctccgacggcgacttcctg
atctttgagggcaaccgctacagccgcaagggcttcctgttcaagagcttcgccatgtca
gccgtgatcacggagggggtcaagcccaccctgtccgagctggagaaattcgaggaccaa
cccgaaggcatcgacctggaggtggtgactgagagcacagggaaagagcgggaacacaac
ttccagccaggggacaacgtggaggtgtgcgagggtgagctcatcaacctgcagggcaaa
atcctcagcgtggacggcaacaagatcaccatcatgcccaagcatgaggacctcaaggac
atgctggagttcccagcgcaggagctgaggaaatatttcaggatgggtgaccacgtgaag
gtgattgccgggcgcttcgagggcgacaccgggctcattgtcagggtggaggagaatttt
gtcatcctgttctcagacctgaccatgcacgagctgaaggtgctgccccgggatctgcag
ctctgctctgagacagcctcgggggtggatgtgggggggcagcacgagtggggagagctg
gtgcagctggacccccaaaccgtgggggtcatcgtacgcctggagcgggaaaccttccag
gtgctgaacatgtacgggaaggtggtgacggtgcggcaccaggctgtcaccaggaagaaa
gacaatcgcttcgctgtggcgctggactcggagcagaacaacatccacgtcaaggacatc
gtcaaagtcatcgacggtccccactcgggccgtgagggtgagatccgccacctgttccgg
ggctttgccttcctgcactgcaagaagctggtggagaatggggggatgttcgtgtgcaag
acccggcacctggtgctggcagggggctccaagccccgcgacgtcaccaacttcgccatg
tgcagctttgccccaatgtccccccgcatcagcagccccatgcaccccagtggggccggg
cagaggggaggatttggggccggggggctgagccggggccgcggccggcgcgacaacgac
ctcatcgggcagacggtgcgcatctcccaggggccctacaaaggttacataggggtggtc
aaggacgccacggagtcaacagcgcgcgtggagctgcactcgacgtgccagaccatctca
gtggacaggcagcgactgaccactgtggggtcccggcgccctgggggtctcacctcggcc
tacgggaggaccccaatgtacggctcacagacccccatgtacggctcggggtcccgcacc
cccatgtacggctcgcagaccccgctgcacgacggaagccgcaccccccactatggatcc
cagacccccctgcatgacgggagcaggaccccagcccagagcggggcctgggaccccaac
aaccccaacactccctcgagggctgacgaggatttcgagtacggcttcgaggacgagccc
acgccatcaccccagggctacgggggcaccccgaacccccagaccccggggtaccctgac
cccgcctccccccaagtcagccagccctacaacccccagacccctggcacgcctgccatg
tacaacacggagcagttctcgccctacgccgtcccctccccccagggctcataccagccc
agcccctccccccagagctaccaccaggtagccccgagcccagtgggctaccagaacacg
cactcgccggccagctaccaccccacgccctcccccatggcgtaccaggccagccctagc
cccagcccagttggctacagcccgatgacccccggggctccgtcccccggtggctacaac
ccacacaccccgggctcgggcatcgagcccagcgcgggcgactgggtgaccacggacatc
caggtgaaagtgcgggactcgtacctggacagcgcagccgtggggcagaccggggtcatc
cgcagcgtcacgggcgggatgtgctcagtgtacctgaaggacagcgagaaggtggtgagc
gtgtccagtgagcacctggagcccgtcacgcctaccaagagcaacaaggtgaaggtgatc
ctgggcgaggaccgcgaggccacggggatcctgctgagcattgacggcgaggacgggatc
gtgcgcatggacctggaggagcagctcaagatcctcaacctgcgcttcctggggaagctg
ctcgaggcctga
DBGET
integrated database retrieval system
