Cinclus cinclus (white-throated dipper): 134056102
Help
Entry
134056102 CDS
T10813
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
134056102 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccic03019
]
134056102 (MTREX)
03041 Spliceosome [BR:
ccic03041
]
134056102 (MTREX)
03009 Ribosome biogenesis [BR:
ccic03009
]
134056102 (MTREX)
03016 Transfer RNA biogenesis [BR:
ccic03016
]
134056102 (MTREX)
Enzymes [BR:
ccic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
134056102 (MTREX)
Messenger RNA biogenesis [BR:
ccic03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
134056102 (MTREX)
Spliceosome [BR:
ccic03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
134056102 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
134056102 (MTREX)
Ribosome biogenesis [BR:
ccic03009
]
Eukaryotic type
Pre-60S particles
Helicases
134056102 (MTREX)
Transfer RNA biogenesis [BR:
ccic03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
134056102 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
134056102
NCBI-ProteinID:
XP_062368586
LinkDB
All DBs
Position
Z:complement(68251212..68292029)
Genome browser
AA seq
1034 aa
AA seq
DB search
MAEAFGDELFSVFEEDAAAAASGAKKSKTGPAEGARRPGKRLEEKPSVPAIVKPKREVEI
DSTENVILGKKPKLEDVLAEDVNLTDLMPQVKVQSVETVEGCTHEVALPANEEFTGLKPR
TGKAAKEYPFILDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFT
SPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAW
VIFDEIHYMRDTERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIY
TDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGT
KGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAI
DCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMG
INMPARTVLFTSASKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIG
KQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRTIPEIVERVNNL
EAQYNKIVIPNEENVVIYYRIRQQLAKLGKDIEEYIHKPKYCLPFLQPGRLVKVKNEGDD
YGWGVVVNFSKKSNVKPSSGELDPLYVVEVLLHCSKDSLKNSATESAKPARPDERGEMQV
VPVLVHLVSAISSVRLYIPKDLRPIDNRQSVLKSVQEVQKRFPDGVPLLDPIDDMGIKDQ
GLKKVIQKIEAFEHRMYSHPLHNDPNLETIYKLCEKKAQIAMDIKVAKRELKKARTVLQM
DELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATAL
LSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLETDEENYLNSFRPNLMD
VVYTWANGANFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGIT
KIKRDIVFAASLYL
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggcctttggggatgagctcttcagcgtgttcgaggaggacgcggccgccgct
gcttctggcgccaagaagagcaaaacgggccccgccgagggtgccaggaggccgggaaaa
cggttggaagaaaaaccttcagtaccagcaatagtcaagccgaaacgggaagttgagatt
gatagtactgaaaatgtcattttgggaaaaaaaccaaaattggaagatgttttagcagaa
gatgttaatttgacagatttgatgcctcaggtaaaggtgcagtctgtggaaactgttgaa
ggttgtacacatgaggttgcgcttccagcaaatgaggaattcacaggtctgaagccaaga
actggaaaagctgcaaaagaatatccatttattcttgatgctttccagagagaagctatt
ctttgtgtagataataaccagtctgtgttagtgtcagctcacacatcagctggtaaaact
gtttgtgctgaatatgcaattgccctggctttgagggaaaagcagcgtgtgatatttaca
agtccaattaaagctttgagtaatcagaagtaccgtgagatgtatgaggaatttcaggat
gttggtttgatgactggggatgtcaccattaatcctacagcttcttgtttggtaatgaca
actgagatcttgagaagtatgctgtacagaggttctgaggttatgcgtgaagttgcatgg
gttatttttgatgaaattcactacatgagagatacagaacgtggtgtggtttgggaagag
actattattttgcttcctgataacgtacattatgtgttcctttctgcaactattccaaat
gcccgtcagtttgctgaatggatatgccatcttcacaaacagccttgccatgtgatttat
actgactatcgacccactccactgcagcattatatatttccagcaggaggagatggactc
catctggttgttgatgaaaatggagatttcagagaagataattttaatacggcaatgcaa
gtgcttagagatgcaggagacttagcaaaaggggatcagaaaggcaggaaaggaggaaca
aaaggtccttcaaatgtttttaagattgtgaagatgatcatggagaggaatttccaacct
gtgattattttcagcttcagtaagaaagactgtgaagcctatgcacttcagatgacaaag
ttagatttcaatacagatgaagaaaaaaaaatggttgaagaagtcttcaataatgcaatt
gattgtctctcagatgaagacaaaaagcttcctcaggttgaacatgtgcttccccttctg
aaacgaggaattggtattcatcatggtggtttgcttcctatcttaaaagaaacaatagaa
atccttttctcagagggcctaataaaggccttatttgcaacagagacttttgctatggga
attaatatgccggccagaactgtgctgtttacaagtgccagtaaatttgatgggaaagat
ttccgatggatatcctcaggtgaatacattcaaatgtcaggtcgcgcaggacgccgaggt
atggatgacagaggaatagtaattcttatggtggatgagaaaatgagtccgacaattggc
aagcagcttttgaagggttcagctgatcccttaaacagtgcgttccacctgacatacaac
atggtattgaacttacttcgagtagaggaaattaaccctgaatacatgttagaaaaatca
ttttatcagttccaacattacagaactattccagaaatagtggaaagagtcaataatttg
gaagcacagtacaacaaaattgtcatacccaatgaagaaaatgtagtgatatactacaga
atccgccagcagcttgcaaaactgggtaaagatattgaagagtacattcacaaaccaaag
tactgcttgccctttctacagccaggaagactggtaaaggtgaagaatgaaggtgatgac
tatggatggggagtggttgttaatttctctaagaaatcaaatgttaagcccagttctggt
gaattggacccactctatgtagttgaagtgctcctgcactgcagcaaagacagtttgaaa
aattctgctactgagtctgcaaagccagccagacctgatgagagaggagagatgcaggtt
gttcctgttttggtgcatcttgtgtcagctatcagcagtgtccgactgtacatacctaaa
gacttgaggcctattgataacagacaaagtgtgttaaaatctgtacaggaagtacagaaa
cggtttcctgatggagtgcccttactagaccctattgatgatatgggcatcaaagaccaa
gggttgaaaaaagtaatacaaaaaatagaggcatttgagcataggatgtattcacatcct
cttcacaatgatccaaacttggaaaccatatacaaactttgtgaaaaaaaagcacagatt
gctatggatattaaagtagcaaagcgggaattgaagaaagccagaactgtcctgcaaatg
gatgaactcaagtgccgcaagcgtgttttgagaagactggggtttgccacatcctcagat
gttattgagatgaaaggacgggttgcttgtgaaatcagcagtgctgatgaactactcctg
acagaaatgatgttcaatggtctcttcaatgacttgtctgcagaacaggcaactgcatta
ctcagctgttttgtatttcaagagaattccagtgaaatgccaaaattaactgagcagttg
gcaggaccacttcggcaaatgcaggagtgtgcaaaaagaatcgccaaggtgtcagcagaa
gcaaaactggaaactgatgaagaaaattacttgaattctttcagacccaacctaatggat
gttgtgtatacatgggcaaatggagctaactttgctcatatctgcaaaatgactgatgtc
tttgaaggtagcataatccgttgcatgaggcgtctagaagaactgctgcggcagatgtgc
caggctgcaaaagccattgggaacacagaactggaaaataagtttgcagaggggattaca
aaaatcaagagagatattgtgtttgctgcaagcctttacctgtaa
DBGET
integrated database retrieval system
