Cinclus cinclus (white-throated dipper): 134056325
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Entry
134056325 CDS
T10813
Symbol
PTCH1
Name
(RefSeq) protein patched homolog 1
KO
K06225
patched 1
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
134056325 (PTCH1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sterol-sensing
Patched
Motif
Other DBs
NCBI-GeneID:
134056325
NCBI-ProteinID:
XP_062369046
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All DBs
Position
Z:46413894..46476589
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AA seq
1442 aa
AA seq
DB search
MASAGNASEPETSSTAGGGGHPGRAARNGGGRRRRTGGNRRAAAPDREYLQRPSYCDAAF
ALEQISKGKATGRKAPLWLRAKFQRLLFKLGCYIQKNCGKFLVVGLLIFGAFAVGLRAAN
LETNVEELWVEVGGRVSRELNYTRQKIGEEAMFNPQLMIQTPQEDGANVLTTEALRQHLE
SALQASRVHVYMYNRQWKLEHLCYKSGELITEAGYMDQIIEYLYPCLIITPLDCFWEGAK
LQSGTAYLLGKPPLQWINFDPLEFLEELKKINYQVESWEEMLNKAEVGHGYMDRPCLNPA
DPDCPITAPNKNSTKPLDVALVLSGGCYGLSRKYMHWQEELIIGGTVKNSSGKLVSAQAL
QTMFQLMTPKQMYEHFKGYEYVSHINWNEDKAAAILEAWQRMYVEVVHQSVAQNSTQKVL
SFTTTTLDDILKSFSDVSAIRVASGYLLMLAYACLTMLRWDCAKSQGAVGLAGVLLVALS
VAAGLGLCSLIGISFNAATTQVLPFLALGVGVDDVFLLAHAFSETGQNKRIPFEDRTGEC
LKRTGASVALTSISNVTAFFMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSMDL
YRREDRRLDIFCCFTSPCVTRVIQVEPQVYAENDNTCYSPPPPYSSHGFAHETQITMQST
VQLRTEYDPHTQVYYTTAEPRSEISVQPVTVTQDNLSCQSPESTSSTRDLLSQFSDSSIH
CLEQPCTKWTLSSFAEKHYAPFLLKPKAKIVVIFLFLGLLGLSLYGTTRVRDGLDLTDIV
PRETREYDFIAAQFKYFSFYNMYIVTQKADYPNVQHLLYELHRSFSNVAYVLLEEDRQLP
KMWLHYFRDWLQGLQDAFDSDWETGKITYNNYKNGSDDAVLAYKLLVQTGNQAKPIDISQ
LTKQRLVDADGIINPNAFYIYLTAWVSNDPVAYAASQANIRPHRPEWVHDKADYMPETRL
RIPAAEPIEYAQFPFYLNGLRETSDFVEAIEKVRAICNNYTSLGISSYPNGYPFLFWEQY
IRLRHWLLLSISVVLACTFLVCALFLLNPWTAGIIVVVLALMTVELFGMMGLIGIKLSAV
PVVILIASVGIGVEFTVHVALAFLTAIGDRNHRAVLALEHMFAPVLDGAVSTLLGVLMLA
GSEFDFIVRYFFAVLAILTILGVLNGLVLLPVLLSFFGPYPEVSPANGQDRLPTPSPEPP
PGTVRFALPPGHTNNASDSSDSEYSSQTTVSGISEELHQYEATRGPGAPVHQVVVEATEN
PLFARSTVVQPEARHQPSPRLQPNPDPSTQQPWHQGRQPKRAAREGPRPPPYRPRRDAFE
ISTEGHPAAGSRDRLGHKARSHSLRSPAFGPAGAAGAAYCQPITTVTASASVTVAVHPAL
HGHGSHGAGFPAYDGHREAGHAPFEDPHVPFNVRCERRNSKVEVIELQDVECEERIPGNS
SQ
NT seq
4329 nt
NT seq
+upstream
nt +downstream
nt
atggcctcggccggtaacgcgtcggagccggagaccagcagcaccgcgggcggcggaggc
caccccggccgggcggcgagaaacggcggcgggaggcggcgaaggactggagggaatcgg
cgcgccgcggcgcccgaccgggagtatctgcagcggccaagctactgcgatgcggctttc
gccttggagcagatttcaaaggggaaggcgacgggacggaaagcgccgctgtggctgcga
gcaaagtttcagagactgttgtttaaactgggctgttacattcagaaaaactgcgggaag
tttttggttgtcggcctcctgatatttggggctttcgctgtaggattaagggcagctaat
ctcgagaccaacgtggaggaactgtgggtggaagttggtggacgagtgagtcgggagtta
aattacacacggcagaagattggagaagaggccatgttcaacccccagctcatgatccag
actccacaggaagatggtgctaatgtactaacaacagaagcactccgacagcaccttgag
tctgcgcttcaggccagcagagtacatgtctatatgtacaacagacagtggaaattggaa
catttgtgttacaaatcaggagaactcatcacagaagcaggttacatggaccagatcata
gaatatctttatccttgcttaattatcactcctttggactgcttctgggagggagcaaag
ctacagtcaggaactgcctatctattagggaagcctcctttgcagtggatcaactttgac
cccttagaattcttggaagagttaaagaaaataaactaccaagtggagagctgggaagaa
atgctgaataaagcagaggttggtcatggttatatggatcgaccctgcctgaatcctgct
gatcccgattgcccaatcacagctcccaataaaaattccaccaaacctcttgatgtagcc
cttgttttgagtggtggatgctatggactatcaagaaaatacatgcattggcaggaggag
ctgattataggtggtacagtcaagaacagttctggtaaacttgtcagtgcccaggctttg
caaaccatgtttcagttaatgacccctaagcaaatgtatgaacatttcaaggggtatgaa
tatgtttcacatatcaactggaacgaggacaaggcagcagcgattctggaagcctggcag
aggatgtatgttgaggttgttcatcaaagtgttgcacaaaactctactcagaaggtgctt
tcctttactacgaccaccctggatgacatcttgaagtcattttctgatgtcagtgctatc
cgagtagctagtggctacttactaatgcttgcctatgcctgtttaacgatgctgcggtgg
gactgtgccaagtctcagggtgctgtggggctggcaggagtcttgttggttgcactctct
gtggctgcaggattgggtctgtgctcattgattggaatttcctttaatgccgccacaact
caggttttgccttttcttgctcttggagttggtgtagatgatgttttccttctggcacat
gcatttagtgaaacaggacagaataagagaattccatttgaggacagaacaggtgaatgt
ctgaagcgaacaggagcaagtgtagcccttacatctatcagcaatgttactgccttcttt
atggctgccttaattcctattccggctttaagggcattttcactccaagcagcagttgtg
gtggtgttcaattttgctatggttctgctgattttccctgctatcctgagcatggatctt
tatcgtcgggaagacaggagactggacatattttgctgttttacaagcccatgtgtcact
agagtgattcaggttgagcctcaagtgtatgcagaaaatgacaatacttgctacagtcct
ccaccgccatacagcagccatggttttgcacatgaaactcagattacaatgcagtccaca
gtgcagttgcgcacagagtatgaccctcacacgcaggtgtactacaccacagcagagcct
cgctcagaaatatctgtgcagccagtgacagtgacacaagataacctgagctgccagagc
ccagaaagcacaagctcgacgagggatttactttcccaattctcagactccagtatacat
tgccttgagcaaccttgtacgaagtggacactctcatcttttgcagaaaagcattatgct
ccattcctcctgaaaccaaaagctaagattgtggttatttttctttttctgggtttactt
gggctcagcctttatggaactacccgggtgagagatggactagatctcacagacattgtg
ccacgggaaacacgggaatatgactttattgctgcacagttcaagtacttttcgttctac
aacatgtatattgtgacacaaaaagcagactatccaaatgtccagcacttactttatgaa
cttcacagaagtttcagcaatgtggcatatgttttgttggaagaggataggcagctcccc
aaaatgtggttgcactactttcgagactggctgcaaggacttcaggatgcatttgacagc
gactgggaaactgggaagataacctacaacaactataaaaatggttctgatgatgctgtt
ttggcttacaagctcttggtacaaacaggcaaccaggcaaagcccattgacatcagccag
ttgactaaacagcgtctggtggatgcggatggaatcattaacccaaatgctttctacatc
tacctgacagcctgggttagcaatgaccctgtggcctatgctgcctcgcaagccaacatc
cgcccgcaccgcccggagtgggtccatgacaaagcagactacatgccagaaacacggctg
aggattccagcagccgagccgatagaatacgctcagtttcctttctacctcaatggattg
cgtgaaacttctgactttgtggaggctattgagaaagtgagagctatctgtaataactac
accagcctggggatctccagctacccaaatggttacccatttctcttctgggagcagtac
atcagacttcgtcactggctcctcttatccattagcgtggttttagcttgcacgtttctg
gtgtgtgccctcttcctcctaaacccctggacagctgggatcattgtggtggtactggct
ctgatgactgtggagctgtttggcatgatgggtctaattggaataaagctgagtgcagtg
cctgtggttatcctgattgcttctgttggcattggtgtggaattcactgttcatgttgct
ttggcatttttaactgccataggagacaggaaccatagggctgtccttgcattggaacac
atgtttgcaccagtgctggatggggccgtgtccactctgcttggggtgttaatgcttgca
ggatcagagtttgattttattgtcaggtatttctttgctgttttggcaatcctaaccatt
ctgggagttctcaatggattggtgctgcttcctgttcttctctctttctttggaccatac
cccgaggtttctccagccaatggacaggacagattgcccacaccatctcctgagccaccc
cccggtactgtgaggtttgcactgccacctggccacacaaataatgcatcagattcctct
gattctgaatacagctctcaaaccacagtgtctggcatcagtgaagagctacatcagtac
gaggccacacgaggccctggggcaccagtccatcaagtagtagtggaagcaactgagaat
cctctctttgcaagatccactgtggttcagccagaagcaaggcaccagccgagtcctagg
ctgcagccaaatcccgatcccagcacacagcagccctggcatcagggcagacagcccaaa
agggcagcgagggaagggccgcgaccgcctccttaccggcctcgcagggacgcctttgag
atttctactgaagggcacccggccgccggcagcagggaccgcttgggccacaaggcccgc
tcgcacagcctgaggagcccggcgttcgggccggcgggcgccgcgggagcggcctactgc
cagcccatcaccaccgtgactgcctcggcctccgtcaccgtggccgtgcaccctgccctg
cacggccacggctcccacggagccggctttccggcctacgacggacaccgtgaagctggc
cacgcgccgttcgaggacccccacgtgcctttcaatgtgcgctgtgaaagaagaaattct
aaagtagaagttatagaactgcaagatgtcgaatgtgaggagaggatacctggcaacagc
tcacaataa
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