Cinclus cinclus (white-throated dipper): 134056386
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Entry
134056386 CDS
T10813
Name
(RefSeq) 3'-5' RNA helicase YTHDC2-like
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
ccic Cinclus cinclus (white-throated dipper)
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccic03041
]
134056386
Enzymes [BR:
ccic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
134056386
Spliceosome [BR:
ccic03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
134056386
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
HA2_C
OB_NTP_bind
Helicase_C
DEAD
R3H
AAA_19
HA2_N
nSTAND3
ATPase
PhoH
Ank_2
AAA_22
AAA_29
ResIII
AAA_23
AAA_7
Motif
Other DBs
NCBI-GeneID:
134056386
NCBI-ProteinID:
XP_062369135
LinkDB
All DBs
Position
Z:complement(24776537..24805347)
Genome browser
AA seq
1424 aa
AA seq
DB search
MSRHRRVSCRQPSGARGGSAASAAVRARAEALREVVVDEEVEIAVQLALERFRSGDEAEL
EFPSSFTSTERAFVRRRCQSLGLVPKSKGKGANRYLTARKKDVSELTHAVMTCDLALRTR
HIVWSVIESFPVTNKEHTELLPRSERGNTCAVESENKEVNKRSCRLNDGIPQIPVKRGES
EFDSFRQSLPVFEKQEEIVQIIKDNKIVLIIGETGSGKTTQIPQFILDDCCKNGTPCRVF
CTQPRRLAAVAAAERVAAERKEKIGQTIGYQIRLESRVSPKTLVTFCTNDMLLGTLMAGD
STLSTVTHVIVDEVHERDRFSDFLLIKLRDVLQNQPNLKLIISSAALDANLFIRYFGSCP
VIHIQGRAFEVKEMFLEDILRSTGYTNKEMVKYKNEKHQEEKQKNTLAEWCSAEENTHKL
ASRRQKLIPKANEEYKWLDDGGDTVFNQLMEKDVNCLEPWIVKEMDSCLSDIWLHKDIDS
FAHVFHLILTENVSVDYRHSETGATALMISSGRGFLSQIEQLISMGASIHFKSSNGWMAV
DWARHFGQTEVIDLLESYSASFGFGNLDESSLVQNSGSDLRAEDRELLTAYHHSFDDEKV
DLDLIMHLLHTICHSCGAGAILIFLPGYDEIVSLRDRILFDDKKFADNAHRYRVFLLHSS
VQTLDQKKVLETPPSGIRKIILSTNIAETSITVSDVVFVIDSGKVKEMSFDPRSRVTMLK
MGWISKASAIQRKGRAGRCQPGVCFRLFSRLRFQNMLEFQSPELLRIPLQEICLYTKLLA
PTNCPVIDFLMRAPDPPPAVTVRNAVHMLKTIDAMDPWEDLTELGYHLTELPVEPHLGKM
VLYAVVLKCLDPVLTIACALACQDPFVLPMLASQKRAAMLCRKRFAAGTFSDHMALLRAF
QAWQKARSDGWERTFCEKNFLSQATMEIIVGMRTQLLGQLRASGFVRARGGADIRDVNTN
SENWAVIKAALVAGMYPNLVHIDRESLVLTEPKEKKVRFHPTSVLGQSQYKKIAPANGQA
AAIQALPTDWLIYDEMTRGHKIANIRCCSVVTPVTVALFCGPARLPSNALQASSSFRGGG
ASNDSSGSEMEDKTAANLALLKLDEWLHLKLDPEAAGMLLQLRQKWHSLFLRRMQAPSKP
WSQGDETIVRAITAVLCAEEQYAGLQQPSGIGQRPRPATCEELPLASTWKSSNSRKNSTE
TELSDSSNAEKVSVKSTSPALHQPKKYKEKDIMVSKQSSDNRSAQSSVKPVDSSPRATPP
SPVSGKGCKSPSPRQNMPVRYFIMKSSNLQSIDISQQKGIWSTTPSNERKLNGAFWESSV
VYLIFAVQGSACFQGFARMASAIGFEKSQDWGSAGFGGVFKVDWIRKEVIPFQFAHHLLN
PWNDSKKVQISTDGQELEPQVGEQLLQLWDHIPLAGKKLTEHIK
NT seq
4275 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgacacaggcgggtctcgtgccggcagcccagcggggccagggggggctcggct
gcctccgccgcggtgcgcgcccgggccgaggccctcagggaggtcgtcgtggacgaggag
gtggagattgcggtgcagctcgccctggagcggttccggagcggggacgaggcggagttg
gaatttccttctagtttcactagtactgaaagagcatttgttcgccggcgctgtcagtct
cttggactggtacctaaaagcaaaggaaaaggagccaatcgatacctgactgcaaggaag
aaggatgtgtcagaactgacgcatgcagtcatgacttgtgacttggctctccgtacaaga
cacattgtttggagtgtaattgagagctttcctgtcacaaataaggaacacacagaactc
ctgccaaggtcagagcgaggaaatacctgtgctgttgaatctgaaaacaaagaagtgaac
aagagaagttgtcgacttaatgatggtatcccccagatcccagtgaaaagaggggaatca
gagtttgattccttcaggcaatcactaccagtttttgaaaaacaggaagaaatcgtccaa
ataataaaggacaataaaatcgttttgattataggagagactggatcaggaaaaactact
caaatccctcagtttatccttgatgactgctgcaagaatggaactccctgtcgtgtgttt
tgtacccagccaagacgtttagcagctgttgctgcggctgaaagggttgcagcagaaaga
aaagagaagattggccagacgattggttaccagatccgcttagaaagcagggtttctcca
aagacactggtaacattctgcactaatgacatgctccttggcacgctgatggcaggagac
agcaccctctccaccgtgactcatgttattgtggatgaagtacatgagagggataggttt
agcgacttcttgctaataaaactgagagatgtgctgcaaaaccagcctaatttaaagcta
attatttctagtgctgctctagatgcaaatctctttattagatattttggaagctgccca
gtaatacatatccaaggaagagcttttgaagttaaagagatgtttctggaggacatttta
cgaagcactgggtatacaaacaaagagatggtaaagtacaaaaatgagaagcaccaagaa
gagaagcagaagaacactctcgctgagtggtgttcagctgaagaaaacactcacaaactg
gcatctcggagacaaaaattgattccaaaggcaaatgaagagtacaaatggttggatgat
ggtggtgacacagtatttaatcaactcatggagaaagatgtgaattgccttgaaccatgg
atagtaaaagaaatggattcctgtctttctgacatctggttacataaagatattgattcc
tttgctcacgtgttccatcttattttaactgaaaatgtcagtgttgattataggcacagt
gaaaccggtgcaactgctctgatgatttcttcagggagaggctttttgagtcaaatagaa
cagctgatcagcatgggagcaagtatccacttcaaatcatccaatggctggatggctgtg
gactgggctaggcattttggacaaacagaggttattgatctattggaatcctacagtgct
tcattcggatttggaaatctggatgaaagttccctggtccaaaacagcggtagtgacctt
agagcagaggacagagagctactgacagcttatcatcacagttttgatgatgaaaaagtg
gatctggatctgataatgcacttacttcacaccatctgtcatagttgtggtgcaggagca
attttaatatttcttcctggatacgatgagatagtgagcctgagggatcgcattcttttt
gatgacaaaaaatttgctgataatgctcacagataccgagttttcttgcttcattcaagt
gtgcagactttggatcagaagaaagtgcttgaaactccaccttctggcatccgcaaaatt
attctttctactaatattgcagaaacaagcataacggtcagtgatgttgtgtttgtcatt
gactcaggcaaggtgaaagagatgtcttttgatccacggagtcgtgttacaatgctaaaa
atggggtggatttcaaaagccagcgctatccagaggaaaggaagggctgggcgctgtcag
cctggagtctgttttcgtctcttcagcaggctccgatttcagaatatgttagaatttcag
tctccagagcttctaagaattccacttcaggagatttgtttgtacacaaaacttctggct
ccaactaattgtccagttatagactttcttatgagagctcctgatcctccacctgctgta
actgtgagaaatgctgtacatatgcttaagaccatagatgccatggacccttgggaagat
ctcactgagcttggttatcatctcactgaattacctgtagagccacacctcggtaaaatg
gtgttgtatgctgtagttctgaagtgcctggatcctgttctgaccattgcctgtgctctt
gcctgccaagacccttttgtgctgcccatgctggcctcccaaaagcgtgcagccatgctg
tgcaggaagcgttttgctgcagggacgttcagtgaccacatggccctgctcagggctttc
caggcttggcagaaggcacgcagtgacggctgggagagaaccttctgtgaaaagaacttc
ctatcccaagccacaatggaaatcatcgtaggaatgagaacacagttgcttggccagctt
agagcctcaggttttgtgagagccagaggaggagctgatattagagatgtcaatactaac
tctgagaactgggctgtaattaaagctgccttagtggctggcatgtatcccaatcttgtt
catatagacagagaaagcctggtgttgactgaaccaaaggagaagaaagtgcgatttcat
cctacctctgttcttggtcagtctcagtataaaaagattgccccagcaaatggacaagct
gcagccatccaggctctccctacagactggctcatatatgatgaaatgacaagaggtcat
aagatagcaaacatcaggtgctgctctgttgtgacacctgtcaccgtggccctcttctgt
ggaccagccagactgccaagtaacgctttgcaggcatcttcatcctttcgagggggaggg
gcatctaatgatagcagtggcagtgagatggaggacaaaacagctgctaatctggcacta
ctgaagctggatgaatggctccatctcaaactggaccctgaagctgctggtatgctgttg
caactcaggcagaagtggcacagtttgttcctgcgtcgtatgcaagctccttctaaacca
tggtctcagggtgatgaaacaattgtaagagcaattacagctgttctgtgtgctgaagaa
cagtatgcaggtctgcagcagccttcaggaattggccagagaccaagacctgcgacttgc
gaagaacttcctttggcatctacgtggaagtcatccaacagcagaaaaaactccacagaa
actgaattgtctgactcttctaatgctgaaaaggtttcagtgaaatctacatctcccgca
ctccaccagccaaagaagtacaaagaaaaagacattatggtctccaaacaatcctcagat
aacagatcagctcagtcctcagtgaagcctgtagatagcagcccccgtgctactcctcct
tctccggtatctggaaagggctgcaaatctccttcaccaagacaaaacatgccagttcgg
tactttataatgaaaagtagcaacttgcaaagcattgatatttctcagcagaagggaata
tggtccaccacaccaagtaatgaacggaaattgaacggagccttttgggagagcagtgtg
gtttacttaatatttgctgttcaagggtctgcatgctttcagggttttgctagaatggct
tcagctatcgggtttgagaaaagtcaagactggggatctgctggttttggaggtgtattt
aaggtggactggatccgaaaagaagtcattccttttcagtttgcacaccatttgctcaat
ccatggaacgacagtaagaaagtacagataagtacagatggccaggagctggaaccacaa
gttggagagcagttgctgcagctttgggaccatattcctttggcaggaaaaaaactgact
gagcatatcaagtga
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integrated database retrieval system
